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scvi-tools
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tabula-sapiens-spleen-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  1. adata.h5ad +2 -2
  2. lightning_logs/version_0/events.out.tfevents.1733432762.Yoseflab-R13B.329818.14 +3 -0
  3. lightning_logs/version_0/events.out.tfevents.1733433016.Yoseflab-R13B.329818.18 +3 -0
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  16. lightning_logs/version_0/events.out.tfevents.1733439563.Yoseflab-R13B.337477.46 +3 -0
  17. lightning_logs/version_0/events.out.tfevents.1733440432.Yoseflab-R13B.337477.54 +3 -0
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  19. lightning_logs/version_0/events.out.tfevents.1733448725.Yoseflab-R13B.365372.63 +3 -0
  20. lightning_logs/version_0/hparams.yaml +1 -0
  21. lightning_logs/version_1/events.out.tfevents.1733434519.Yoseflab-R13B.337477.2 +3 -0
  22. lightning_logs/version_1/events.out.tfevents.1733441332.Yoseflab-R13B.365372.3 +3 -0
  23. lightning_logs/version_1/events.out.tfevents.1733441529.Yoseflab-R13B.365372.6 +3 -0
  24. lightning_logs/version_1/events.out.tfevents.1733441832.Yoseflab-R13B.365372.9 +3 -0
  25. lightning_logs/version_1/events.out.tfevents.1733442653.Yoseflab-R13B.365372.15 +3 -0
  26. lightning_logs/version_1/events.out.tfevents.1733443246.Yoseflab-R13B.365372.18 +3 -0
  27. lightning_logs/version_1/events.out.tfevents.1733443654.Yoseflab-R13B.365372.21 +3 -0
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  29. lightning_logs/version_1/events.out.tfevents.1733444572.Yoseflab-R13B.365372.27 +3 -0
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  39. lightning_logs/version_2/hparams.yaml +1 -0
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.74 | 1.80 |\n| Pearson Correlation | 0.83 | 0.80 |\n| Spearman Correlation | 0.76 | 0.74 |\n| R\u00b2 (R-Squared) | 0.43 | 0.38 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 19.41 |\n| Pearson Correlation | 0.66 |\n| Spearman Correlation | 0.73 |\n| R\u00b2 (R-Squared) | -0.72 |",
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+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 0.97 | 1.62 | 0.67 | 0.87 | 0.12 | 0.86 | 4486.00 |\n| memory B cell | 0.98 | 1.13 | 0.59 | 0.93 | 0.34 | 0.87 | 4391.00 |\n| CD8-positive, alpha-beta memory T cell | 0.93 | 1.74 | 0.63 | 0.91 | 0.32 | 0.83 | 3479.00 |\n| classical monocyte | 0.94 | 1.05 | 0.71 | 0.92 | 0.33 | 0.85 | 3450.00 |\n| plasma cell | 0.84 | 0.97 | 0.76 | 0.96 | 0.38 | 0.93 | 2366.00 |\n| mature NK T cell | 0.95 | 2.29 | 0.57 | 0.85 | 0.33 | 0.80 | 1820.00 |\n| CD4-positive, alpha-beta memory T cell | 0.90 | 2.36 | 0.62 | 0.84 | 0.29 | 0.78 | 1463.00 |\n| type I NK T cell | 0.91 | 2.81 | 0.57 | 0.80 | 0.33 | 0.76 | 1038.00 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 0.90 | 2.77 | 0.60 | 0.83 | 0.30 | 0.77 | 1025.00 |\n| macrophage | 0.90 | 1.85 | 0.73 | 0.90 | 0.40 | 0.83 | 892.00 |\n| naive B cell | 0.88 | 3.65 | 0.58 | 0.71 | 0.28 | 0.70 | 478.00 |\n| endothelial cell | 0.74 | 1.87 | 0.77 | 0.94 | 0.56 | 0.91 | 438.00 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 0.83 | 4.19 | 0.58 | 0.65 | 0.32 | 0.62 | 232.00 |\n| regulatory T cell | 0.85 | 4.38 | 0.57 | 0.69 | 0.38 | 0.74 | 232.00 |\n| erythrocyte | 0.88 | 3.91 | 0.68 | 0.70 | 0.27 | 0.89 | 142.00 |\n| intermediate monocyte | 0.86 | 4.69 | 0.57 | 0.59 | 0.33 | 0.74 | 131.00 |\n| innate lymphoid cell | 0.71 | 5.28 | 0.55 | 0.55 | 0.37 | 0.62 | 90.00 |\n| hematopoietic stem cell | 0.63 | 3.80 | 0.66 | 0.75 | 0.53 | 0.84 | 73.00 |\n| plasmacytoid dendritic cell | 0.63 | 5.07 | 0.57 | 0.50 | 0.35 | 0.70 | 37.00 |\n| CD1c-positive myeloid dendritic cell | 0.58 | 5.33 | 0.56 | 0.44 | 0.38 | 0.62 | 26.00 |\n| platelet | 0.64 | 6.57 | 0.48 | 0.40 | 0.41 | 0.70 | 18.00 |\n| CD141-positive myeloid dendritic cell | 0.53 | 5.46 | 0.57 | 0.52 | 0.39 | 0.67 | 18.00 |"
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