Hugging Face's logo

scvi-tools
/
tabula-sapiens-muscle-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
Model card Files Metrics Community
canergen commited on
Commit
0f43561
·
verified ·
1 Parent(s): d5069f0

Upload README.md with huggingface_hub

Browse files
Files changed (1) hide show
  1. README.md +26 -26
README.md CHANGED
@@ -54,10 +54,10 @@ space might still be useful for analysis.
54
 
55
  | Metric | Training Value | Validation Value |
56
  |-------------------------|----------------|------------------|
57
- | Mean Absolute Error | 1.46 | 1.49 |
58
- | Pearson Correlation | 0.75 | 0.70 |
59
- | Spearman Correlation | 0.70 | 0.67 |
60
- | R² (R-Squared) | 0.34 | 0.23 |
61
 
62
  The gene-wise coefficient of variation summarizes how well variation between different genes is
63
  preserved by the generated model expression. This value is usually quite high.
@@ -66,10 +66,10 @@ preserved by the generated model expression. This value is usually quite high.
66
 
67
  | Metric | Training Value |
68
  |-------------------------|----------------|
69
- | Mean Absolute Error | 18.39 |
70
- | Pearson Correlation | 0.64 |
71
  | Spearman Correlation | 0.75 |
72
- | R² (R-Squared) | 0.05 |
73
 
74
  </details>
75
 
@@ -86,25 +86,25 @@ cell-type.
86
 
87
  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
88
  | --- | --- | --- | --- | --- | --- | --- | --- |
89
- | mesenchymal stem cell | 0.94 | 0.65 | 0.88 | 0.95 | 0.38 | 0.84 | 14148.00 |
90
- | skeletal muscle satellite stem cell | 0.92 | 1.29 | 0.65 | 0.90 | 0.34 | 0.77 | 4831.00 |
91
- | endothelial cell of vascular tree | 0.94 | 1.50 | 0.67 | 0.90 | 0.33 | 0.79 | 3602.00 |
92
- | capillary endothelial cell | 0.90 | 2.27 | 0.59 | 0.82 | 0.32 | 0.75 | 2015.00 |
93
- | macrophage | 0.76 | 2.04 | 0.69 | 0.91 | 0.34 | 0.81 | 1989.00 |
94
- | pericyte | 0.93 | 1.96 | 0.71 | 0.86 | 0.33 | 0.74 | 1794.00 |
95
- | CD8-positive, alpha-beta T cell | 0.73 | 4.52 | 0.63 | 0.78 | 0.22 | 0.78 | 536.00 |
96
- | T cell | 0.91 | 4.92 | 0.53 | 0.59 | 0.33 | 0.76 | 407.00 |
97
- | fast muscle cell | 0.86 | 4.38 | 0.66 | 0.65 | 0.26 | 0.89 | 266.00 |
98
- | tendon cell | 0.72 | 4.89 | 0.51 | 0.58 | 0.35 | 0.66 | 234.00 |
99
- | CD4-positive, alpha-beta T cell | 0.80 | 5.45 | 0.59 | 0.70 | 0.26 | 0.72 | 221.00 |
100
- | slow muscle cell | 0.83 | 4.33 | 0.65 | 0.63 | 0.25 | 0.86 | 163.00 |
101
- | mature NK T cell | 0.77 | 6.24 | 0.61 | 0.71 | 0.25 | 0.71 | 137.00 |
102
- | endothelial cell of lymphatic vessel | 0.67 | 5.22 | 0.55 | 0.57 | 0.31 | 0.63 | 134.00 |
103
- | endothelial cell of artery | 0.77 | 4.58 | 0.61 | 0.61 | 0.38 | 0.74 | 133.00 |
104
- | smooth muscle cell | 0.74 | 4.99 | 0.60 | 0.58 | 0.33 | 0.75 | 58.00 |
105
- | mast cell | 0.67 | 6.73 | 0.49 | 0.50 | 0.26 | 0.76 | 46.00 |
106
- | erythrocyte | 0.23 | 4.95 | 0.32 | 0.37 | 0.47 | 0.96 | 20.00 |
107
- | mesothelial cell | 0.31 | 6.52 | 0.41 | 0.33 | 0.40 | 0.73 | 12.00 |
108
 
109
  </details>
110
 
 
54
 
55
  | Metric | Training Value | Validation Value |
56
  |-------------------------|----------------|------------------|
57
+ | Mean Absolute Error | 1.45 | 1.46 |
58
+ | Pearson Correlation | 0.75 | 0.72 |
59
+ | Spearman Correlation | 0.70 | 0.68 |
60
+ | R² (R-Squared) | 0.35 | 0.30 |
61
 
62
  The gene-wise coefficient of variation summarizes how well variation between different genes is
63
  preserved by the generated model expression. This value is usually quite high.
 
66
 
67
  | Metric | Training Value |
68
  |-------------------------|----------------|
69
+ | Mean Absolute Error | 18.27 |
70
+ | Pearson Correlation | 0.65 |
71
  | Spearman Correlation | 0.75 |
72
+ | R² (R-Squared) | 0.06 |
73
 
74
  </details>
75
 
 
86
 
87
  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
88
  | --- | --- | --- | --- | --- | --- | --- | --- |
89
+ | mesenchymal stem cell | 0.94 | 0.67 | 0.86 | 0.95 | 0.38 | 0.84 | 14148.00 |
90
+ | skeletal muscle satellite stem cell | 0.91 | 1.32 | 0.63 | 0.89 | 0.34 | 0.77 | 4831.00 |
91
+ | endothelial cell of vascular tree | 0.95 | 1.44 | 0.69 | 0.91 | 0.32 | 0.78 | 3602.00 |
92
+ | capillary endothelial cell | 0.90 | 2.20 | 0.61 | 0.83 | 0.31 | 0.75 | 2015.00 |
93
+ | macrophage | 0.77 | 1.95 | 0.72 | 0.91 | 0.34 | 0.81 | 1989.00 |
94
+ | pericyte | 0.91 | 2.17 | 0.66 | 0.85 | 0.33 | 0.74 | 1794.00 |
95
+ | CD8-positive, alpha-beta T cell | 0.73 | 4.42 | 0.64 | 0.79 | 0.21 | 0.78 | 536.00 |
96
+ | T cell | 0.92 | 4.72 | 0.55 | 0.62 | 0.32 | 0.76 | 407.00 |
97
+ | fast muscle cell | 0.87 | 4.59 | 0.64 | 0.62 | 0.26 | 0.89 | 266.00 |
98
+ | tendon cell | 0.75 | 4.76 | 0.53 | 0.59 | 0.36 | 0.66 | 234.00 |
99
+ | CD4-positive, alpha-beta T cell | 0.80 | 5.34 | 0.59 | 0.70 | 0.26 | 0.72 | 221.00 |
100
+ | slow muscle cell | 0.84 | 4.24 | 0.66 | 0.63 | 0.25 | 0.86 | 163.00 |
101
+ | mature NK T cell | 0.76 | 6.20 | 0.61 | 0.71 | 0.25 | 0.71 | 137.00 |
102
+ | endothelial cell of lymphatic vessel | 0.66 | 5.15 | 0.56 | 0.59 | 0.30 | 0.62 | 134.00 |
103
+ | endothelial cell of artery | 0.75 | 4.51 | 0.61 | 0.61 | 0.37 | 0.74 | 133.00 |
104
+ | smooth muscle cell | 0.71 | 5.06 | 0.60 | 0.58 | 0.33 | 0.74 | 58.00 |
105
+ | mast cell | 0.71 | 6.56 | 0.51 | 0.50 | 0.26 | 0.76 | 46.00 |
106
+ | erythrocyte | 0.24 | 5.01 | 0.31 | 0.37 | 0.48 | 0.96 | 20.00 |
107
+ | mesothelial cell | 0.36 | 6.41 | 0.42 | 0.33 | 0.42 | 0.74 | 12.00 |
108
 
109
  </details>
110