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scvi-tools
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tabula-sapiens-muscle-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  28. metrics.json +3 -3
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- "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.47 | 1.47 |\n| Pearson Correlation | 0.75 | 0.72 |\n| Spearman Correlation | 0.70 | 0.68 |\n| R\u00b2 (R-Squared) | 0.33 | 0.29 |",
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- "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 18.32 |\n| Pearson Correlation | 0.65 |\n| Spearman Correlation | 0.75 |\n| R\u00b2 (R-Squared) | 0.07 |",
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- "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| mesenchymal stem cell | 0.94 | 0.67 | 0.84 | 0.95 | 0.37 | 0.84 | 14148.00 |\n| skeletal muscle satellite stem cell | 0.94 | 1.28 | 0.65 | 0.89 | 0.34 | 0.77 | 4831.00 |\n| endothelial cell of vascular tree | 0.95 | 1.43 | 0.70 | 0.92 | 0.32 | 0.78 | 3602.00 |\n| capillary endothelial cell | 0.89 | 2.19 | 0.62 | 0.84 | 0.31 | 0.75 | 2015.00 |\n| macrophage | 0.76 | 2.10 | 0.68 | 0.90 | 0.35 | 0.81 | 1989.00 |\n| pericyte | 0.92 | 2.16 | 0.66 | 0.85 | 0.34 | 0.74 | 1794.00 |\n| CD8-positive, alpha-beta T cell | 0.75 | 4.54 | 0.62 | 0.78 | 0.21 | 0.78 | 536.00 |\n| T cell | 0.90 | 4.91 | 0.53 | 0.60 | 0.33 | 0.76 | 407.00 |\n| fast muscle cell | 0.87 | 4.38 | 0.66 | 0.65 | 0.25 | 0.88 | 266.00 |\n| tendon cell | 0.74 | 4.78 | 0.53 | 0.59 | 0.35 | 0.66 | 234.00 |\n| CD4-positive, alpha-beta T cell | 0.80 | 5.40 | 0.59 | 0.69 | 0.26 | 0.72 | 221.00 |\n| slow muscle cell | 0.85 | 4.10 | 0.68 | 0.66 | 0.25 | 0.86 | 163.00 |\n| mature NK T cell | 0.73 | 6.50 | 0.59 | 0.70 | 0.25 | 0.71 | 137.00 |\n| endothelial cell of lymphatic vessel | 0.70 | 5.23 | 0.54 | 0.59 | 0.29 | 0.62 | 134.00 |\n| endothelial cell of artery | 0.76 | 4.55 | 0.61 | 0.60 | 0.38 | 0.74 | 133.00 |\n| smooth muscle cell | 0.73 | 5.16 | 0.58 | 0.58 | 0.33 | 0.75 | 58.00 |\n| mast cell | 0.70 | 6.45 | 0.52 | 0.51 | 0.25 | 0.76 | 46.00 |\n| erythrocyte | 0.27 | 5.03 | 0.31 | 0.37 | 0.45 | 0.96 | 20.00 |\n| mesothelial cell | 0.35 | 6.40 | 0.42 | 0.33 | 0.41 | 0.73 | 12.00 |"
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.46 | 1.49 |\n| Pearson Correlation | 0.75 | 0.70 |\n| Spearman Correlation | 0.70 | 0.67 |\n| R\u00b2 (R-Squared) | 0.34 | 0.23 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 18.39 |\n| Pearson Correlation | 0.64 |\n| Spearman Correlation | 0.75 |\n| R\u00b2 (R-Squared) | 0.05 |",
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+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| mesenchymal stem cell | 0.94 | 0.65 | 0.88 | 0.95 | 0.38 | 0.84 | 14148.00 |\n| skeletal muscle satellite stem cell | 0.92 | 1.29 | 0.65 | 0.90 | 0.34 | 0.77 | 4831.00 |\n| endothelial cell of vascular tree | 0.94 | 1.50 | 0.67 | 0.90 | 0.33 | 0.79 | 3602.00 |\n| capillary endothelial cell | 0.90 | 2.27 | 0.59 | 0.82 | 0.32 | 0.75 | 2015.00 |\n| macrophage | 0.76 | 2.04 | 0.69 | 0.91 | 0.34 | 0.81 | 1989.00 |\n| pericyte | 0.93 | 1.96 | 0.71 | 0.86 | 0.33 | 0.74 | 1794.00 |\n| CD8-positive, alpha-beta T cell | 0.73 | 4.52 | 0.63 | 0.78 | 0.22 | 0.78 | 536.00 |\n| T cell | 0.91 | 4.92 | 0.53 | 0.59 | 0.33 | 0.76 | 407.00 |\n| fast muscle cell | 0.86 | 4.38 | 0.66 | 0.65 | 0.26 | 0.89 | 266.00 |\n| tendon cell | 0.72 | 4.89 | 0.51 | 0.58 | 0.35 | 0.66 | 234.00 |\n| CD4-positive, alpha-beta T cell | 0.80 | 5.45 | 0.59 | 0.70 | 0.26 | 0.72 | 221.00 |\n| slow muscle cell | 0.83 | 4.33 | 0.65 | 0.63 | 0.25 | 0.86 | 163.00 |\n| mature NK T cell | 0.77 | 6.24 | 0.61 | 0.71 | 0.25 | 0.71 | 137.00 |\n| endothelial cell of lymphatic vessel | 0.67 | 5.22 | 0.55 | 0.57 | 0.31 | 0.63 | 134.00 |\n| endothelial cell of artery | 0.77 | 4.58 | 0.61 | 0.61 | 0.38 | 0.74 | 133.00 |\n| smooth muscle cell | 0.74 | 4.99 | 0.60 | 0.58 | 0.33 | 0.75 | 58.00 |\n| mast cell | 0.67 | 6.73 | 0.49 | 0.50 | 0.26 | 0.76 | 46.00 |\n| erythrocyte | 0.23 | 4.95 | 0.32 | 0.37 | 0.47 | 0.96 | 20.00 |\n| mesothelial cell | 0.31 | 6.52 | 0.41 | 0.33 | 0.40 | 0.73 | 12.00 |"
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