// Path: uk/ac/bbsrc/babraham/FastQC/Modules/QCModule.java
// public interface QCModule {
// 
// 	public void processSequence(Sequence sequence);
// 
// 	public JPanel getResultsPanel();
// 	
// 	public String name ();
// 	
// 	public String description ();
// 	
// 	public void reset ();
// 	
// 	public boolean raisesError();
// 	
// 	public boolean raisesWarning();
// 	
// 	public boolean ignoreFilteredSequences();
// 
// 	public void makeReport(HTMLReportArchive report) throws IOException;
// 	
// 	
// }
// 
// Path: uk/ac/bbsrc/babraham/FastQC/Sequence/SequenceFile.java
// public interface SequenceFile {
// 
// 	public boolean hasNext();
// 	public Sequence next() throws SequenceFormatException;
// 	public boolean isColorspace();
// 	public String name();
// 	public int getPercentComplete();
// 	public File getFile();
// 	
// }


import uk.ac.bbsrc.babraham.FastQC.Modules.QCModule;
import uk.ac.bbsrc.babraham.FastQC.Sequence.SequenceFile;

/**
 * Copyright Copyright 2010-11 Simon Andrews
 *
 *    This file is part of FastQC.
 *
 *    FastQC is free software; you can redistribute it and/or modify
 *    it under the terms of the GNU General Public License as published by
 *    the Free Software Foundation; either version 3 of the License, or
 *    (at your option) any later version.
 *
 *    FastQC is distributed in the hope that it will be useful,
 *    but WITHOUT ANY WARRANTY; without even the implied warranty of
 *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *    GNU General Public License for more details.
 *
 *    You should have received a copy of the GNU General Public License
 *    along with FastQC; if not, write to the Free Software
 *    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
 */
package uk.ac.bbsrc.babraham.FastQC.Analysis;


public interface AnalysisListener {

	public void analysisStarted(SequenceFile file);
	public void analysisUpdated(SequenceFile file, int sequencesProcessed, int percentComplete);

// Path: uk/ac/bbsrc/babraham/FastQC/Modules/QCModule.java
// public interface QCModule {
// 
// 	public void processSequence(Sequence sequence);
// 
// 	public JPanel getResultsPanel();
// 	
// 	public String name ();
// 	
// 	public String description ();
// 	
// 	public void reset ();
// 	
// 	public boolean raisesError();
// 	
// 	public boolean raisesWarning();
// 	
// 	public boolean ignoreFilteredSequences();
// 
// 	public void makeReport(HTMLReportArchive report) throws IOException;
// 	
// 	
// }
// 
// Path: uk/ac/bbsrc/babraham/FastQC/Sequence/SequenceFile.java
// public interface SequenceFile {
// 
// 	public boolean hasNext();
// 	public Sequence next() throws SequenceFormatException;
// 	public boolean isColorspace();
// 	public String name();
// 	public int getPercentComplete();
// 	public File getFile();
// 	
// }


// Path: uk/ac/bbsrc/babraham/FastQC/Analysis/AnalysisListener.java
import uk.ac.bbsrc.babraham.FastQC.Modules.QCModule;
import uk.ac.bbsrc.babraham.FastQC.Sequence.SequenceFile;

/**
 * Copyright Copyright 2010-11 Simon Andrews
 *
 *    This file is part of FastQC.
 *
 *    FastQC is free software; you can redistribute it and/or modify
 *    it under the terms of the GNU General Public License as published by
 *    the Free Software Foundation; either version 3 of the License, or
 *    (at your option) any later version.
 *
 *    FastQC is distributed in the hope that it will be useful,
 *    but WITHOUT ANY WARRANTY; without even the implied warranty of
 *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *    GNU General Public License for more details.
 *
 *    You should have received a copy of the GNU General Public License
 *    along with FastQC; if not, write to the Free Software
 *    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
 */
package uk.ac.bbsrc.babraham.FastQC.Analysis;


public interface AnalysisListener {

	public void analysisStarted(SequenceFile file);
	public void analysisUpdated(SequenceFile file, int sequencesProcessed, int percentComplete);

	public void analysisComplete(SequenceFile file, QCModule [] results);
