import tadtool.tad as tad
import tadtool.plot as tp

# load regions data set
regions = tad.HicRegionFileReader().regions("chr12_20-35Mb_regions.bed")

# load matrix
matrix = tad.HicMatrixFileReader().matrix("chr12_20-35Mb.matrix.txt")

# prepare plot
tad_plot = tp.TADtoolPlot(matrix, regions, norm='lin', max_dist=1000000, algorithm='insulation')
fig, axes = tad_plot.plot('chr12:31000000-34000000')

# show plot
fig.show()


import tadtool.tad as tad
import tadtool.plot as tp

# load regions data set
regions = tad.HicRegionFileReader().regions("chr12_20-35Mb_regions.bed")

# load matrix
matrix = tad.HicMatrixFileReader().matrix("chr12_20-35Mb.matrix.txt")

# prepare plot
tad_plot = tp.TADtoolPlot(matrix, regions, norm='lin', max_dist=1000000, algorithm='insulation')
fig, axes = tad_plot.plot('chr12:31000000-34000000')

# show plot
import matplotlib.pyplot as plt
plt.show()


Make sure example also runs if executed as scipt
Make sure example also runs if executed as scipt

  import tadtool.tad as tad
  import tadtool.plot as tp
  
  # load regions data set
  regions = tad.HicRegionFileReader().regions("chr12_20-35Mb_regions.bed")
  
  # load matrix
  matrix = tad.HicMatrixFileReader().matrix("chr12_20-35Mb.matrix.txt")
  
  # prepare plot
  tad_plot = tp.TADtoolPlot(matrix, regions, norm='lin', max_dist=1000000, algorithm='insulation')
  fig, axes = tad_plot.plot('chr12:31000000-34000000')
  
  # show plot
- fig.show()
+ import matplotlib.pyplot as plt
+ plt.show()
  
  
Make sure example also runs if executed as scipt
## Code Before:
import tadtool.tad as tad
import tadtool.plot as tp

# load regions data set
regions = tad.HicRegionFileReader().regions("chr12_20-35Mb_regions.bed")

# load matrix
matrix = tad.HicMatrixFileReader().matrix("chr12_20-35Mb.matrix.txt")

# prepare plot
tad_plot = tp.TADtoolPlot(matrix, regions, norm='lin', max_dist=1000000, algorithm='insulation')
fig, axes = tad_plot.plot('chr12:31000000-34000000')

# show plot
fig.show()


## Instruction:
Make sure example also runs if executed as scipt
## Code After:
import tadtool.tad as tad
import tadtool.plot as tp

# load regions data set
regions = tad.HicRegionFileReader().regions("chr12_20-35Mb_regions.bed")

# load matrix
matrix = tad.HicMatrixFileReader().matrix("chr12_20-35Mb.matrix.txt")

# prepare plot
tad_plot = tp.TADtoolPlot(matrix, regions, norm='lin', max_dist=1000000, algorithm='insulation')
fig, axes = tad_plot.plot('chr12:31000000-34000000')

# show plot
import matplotlib.pyplot as plt
plt.show()

