
from bioc import BioCReader
from bioc import BioCWriter

test_file = '../test_input/PMID-8557975-simplified-sentences.xml'
dtd_file = '../test_input/BioC.dtd'

def main():
    bioc_reader = BioCReader(test_file, dtd_valid_file=dtd_file)
    bioc_reader.read()
    '''
    sentences = bioc_reader.collection.documents[0].passages[0].sentences
    for sentence in sentences:
        print sentence.offset
    '''

    bioc_writer = BioCWriter('output_bioc.xml')
    bioc_writer.collection = bioc_reader.collection
    bioc_writer.write()
    print(bioc_writer)

if  __name__ == '__main__':
    main()


from bioc import BioCReader
from bioc import BioCWriter

test_file = '../test_input/bcIVLearningCorpus.xml'
dtd_file = '../test_input/BioC.dtd'

def main():
    bioc_reader = BioCReader(test_file, dtd_valid_file=dtd_file)
    bioc_reader.read()
    '''
    sentences = bioc_reader.collection.documents[0].passages[0].sentences
    for sentence in sentences:
        print sentence.offset
    '''

    bioc_writer = BioCWriter('output_bioc.xml')
    bioc_writer.collection = bioc_reader.collection
    bioc_writer.write()
    print(bioc_writer)

if  __name__ == '__main__':
    main()

Add BioC.dtd one level up
Add BioC.dtd one level up

  
  from bioc import BioCReader
  from bioc import BioCWriter
  
- test_file = '../test_input/PMID-8557975-simplified-sentences.xml'
+ test_file = '../test_input/bcIVLearningCorpus.xml'
  dtd_file = '../test_input/BioC.dtd'
  
  def main():
      bioc_reader = BioCReader(test_file, dtd_valid_file=dtd_file)
      bioc_reader.read()
      '''
      sentences = bioc_reader.collection.documents[0].passages[0].sentences
      for sentence in sentences:
          print sentence.offset
      '''
  
      bioc_writer = BioCWriter('output_bioc.xml')
      bioc_writer.collection = bioc_reader.collection
      bioc_writer.write()
      print(bioc_writer)
  
  if  __name__ == '__main__':
      main()
  
Add BioC.dtd one level up
## Code Before:

from bioc import BioCReader
from bioc import BioCWriter

test_file = '../test_input/PMID-8557975-simplified-sentences.xml'
dtd_file = '../test_input/BioC.dtd'

def main():
    bioc_reader = BioCReader(test_file, dtd_valid_file=dtd_file)
    bioc_reader.read()
    '''
    sentences = bioc_reader.collection.documents[0].passages[0].sentences
    for sentence in sentences:
        print sentence.offset
    '''

    bioc_writer = BioCWriter('output_bioc.xml')
    bioc_writer.collection = bioc_reader.collection
    bioc_writer.write()
    print(bioc_writer)

if  __name__ == '__main__':
    main()

## Instruction:
Add BioC.dtd one level up
## Code After:

from bioc import BioCReader
from bioc import BioCWriter

test_file = '../test_input/bcIVLearningCorpus.xml'
dtd_file = '../test_input/BioC.dtd'

def main():
    bioc_reader = BioCReader(test_file, dtd_valid_file=dtd_file)
    bioc_reader.read()
    '''
    sentences = bioc_reader.collection.documents[0].passages[0].sentences
    for sentence in sentences:
        print sentence.offset
    '''

    bioc_writer = BioCWriter('output_bioc.xml')
    bioc_writer.collection = bioc_reader.collection
    bioc_writer.write()
    print(bioc_writer)

if  __name__ == '__main__':
    main()
