import io
from typing import BinaryIO, ClassVar

from ..term import Term, TermData
from ..relationship import Relationship, RelationshipData
from ._fastobo import FastoboSerializer
from .base import BaseSerializer


class OboSerializer(FastoboSerializer, BaseSerializer):

    format = "obo"

    def dump(self, file):
        writer = io.TextIOWrapper(file)
        try:
            # dump the header
            if self.ont.metadata:
                header = self._to_header_frame(self.ont.metadata)
                file.write(str(header).encode("utf-8"))
                if self.ont._terms or self.ont._relationships:
                    file.write(b"\n")
            # dump terms
            if self.ont._terms:
                for i, (id, data) in enumerate(self.ont._terms.items()):
                    frame = self._to_term_frame(Term(self.ont, data))
                    file.write(str(frame).encode("utf-8"))
                    if i < len(self.ont._terms) - 1 or self.ont._relationships:
                        file.write(b"\n")
            # dump typedefs
            if self.ont._relationships:
                for i, (id, data) in enumerate(self.ont._relationships.items()):
                    frame = self._to_typedef_frame(Relationship(self.ont, data))
                    file.write(str(frame).encode("utf-8"))
                    if i < len(self.ont._relationships) - 1:
                        file.write(b"\n")
        finally:
            writer.detach()

import io
from typing import BinaryIO, ClassVar

from ..term import Term, TermData
from ..relationship import Relationship, RelationshipData
from ._fastobo import FastoboSerializer
from .base import BaseSerializer


class OboSerializer(FastoboSerializer, BaseSerializer):

    format = "obo"

    def dump(self, file):
        writer = io.TextIOWrapper(file)
        try:
            # dump the header
            if self.ont.metadata:
                header = self._to_header_frame(self.ont.metadata)
                file.write(str(header).encode("utf-8"))
                if self.ont._terms or self.ont._relationships:
                    file.write(b"\n")
            # dump terms
            if self.ont._terms:
                for i, id in enumerate(sorted(self.ont._terms)):
                    data = self.ont._terms[id]
                    frame = self._to_term_frame(Term(self.ont, data))
                    file.write(str(frame).encode("utf-8"))
                    if i < len(self.ont._terms) - 1 or self.ont._relationships:
                        file.write(b"\n")
            # dump typedefs
            if self.ont._relationships:
                for i, id in enumerate(sorted(self.ont._relationships)):
                    data = self.ont._relationships[id]
                    frame = self._to_typedef_frame(Relationship(self.ont, data))
                    file.write(str(frame).encode("utf-8"))
                    if i < len(self.ont._relationships) - 1:
                        file.write(b"\n")
        finally:
            writer.detach()

Fix OBO serializer assuming `Ontology._terms` is properly ordered
Fix OBO serializer assuming `Ontology._terms` is properly ordered

  import io
  from typing import BinaryIO, ClassVar
  
  from ..term import Term, TermData
  from ..relationship import Relationship, RelationshipData
  from ._fastobo import FastoboSerializer
  from .base import BaseSerializer
  
  
  class OboSerializer(FastoboSerializer, BaseSerializer):
  
      format = "obo"
  
      def dump(self, file):
          writer = io.TextIOWrapper(file)
          try:
              # dump the header
              if self.ont.metadata:
                  header = self._to_header_frame(self.ont.metadata)
                  file.write(str(header).encode("utf-8"))
                  if self.ont._terms or self.ont._relationships:
                      file.write(b"\n")
              # dump terms
              if self.ont._terms:
-                 for i, (id, data) in enumerate(self.ont._terms.items()):
+                 for i, id in enumerate(sorted(self.ont._terms)):
+                     data = self.ont._terms[id]
                      frame = self._to_term_frame(Term(self.ont, data))
                      file.write(str(frame).encode("utf-8"))
                      if i < len(self.ont._terms) - 1 or self.ont._relationships:
                          file.write(b"\n")
              # dump typedefs
              if self.ont._relationships:
-                 for i, (id, data) in enumerate(self.ont._relationships.items()):
+                 for i, id in enumerate(sorted(self.ont._relationships)):
+                     data = self.ont._relationships[id]
                      frame = self._to_typedef_frame(Relationship(self.ont, data))
                      file.write(str(frame).encode("utf-8"))
                      if i < len(self.ont._relationships) - 1:
                          file.write(b"\n")
          finally:
              writer.detach()
  
Fix OBO serializer assuming `Ontology._terms` is properly ordered
## Code Before:
import io
from typing import BinaryIO, ClassVar

from ..term import Term, TermData
from ..relationship import Relationship, RelationshipData
from ._fastobo import FastoboSerializer
from .base import BaseSerializer


class OboSerializer(FastoboSerializer, BaseSerializer):

    format = "obo"

    def dump(self, file):
        writer = io.TextIOWrapper(file)
        try:
            # dump the header
            if self.ont.metadata:
                header = self._to_header_frame(self.ont.metadata)
                file.write(str(header).encode("utf-8"))
                if self.ont._terms or self.ont._relationships:
                    file.write(b"\n")
            # dump terms
            if self.ont._terms:
                for i, (id, data) in enumerate(self.ont._terms.items()):
                    frame = self._to_term_frame(Term(self.ont, data))
                    file.write(str(frame).encode("utf-8"))
                    if i < len(self.ont._terms) - 1 or self.ont._relationships:
                        file.write(b"\n")
            # dump typedefs
            if self.ont._relationships:
                for i, (id, data) in enumerate(self.ont._relationships.items()):
                    frame = self._to_typedef_frame(Relationship(self.ont, data))
                    file.write(str(frame).encode("utf-8"))
                    if i < len(self.ont._relationships) - 1:
                        file.write(b"\n")
        finally:
            writer.detach()

## Instruction:
Fix OBO serializer assuming `Ontology._terms` is properly ordered
## Code After:
import io
from typing import BinaryIO, ClassVar

from ..term import Term, TermData
from ..relationship import Relationship, RelationshipData
from ._fastobo import FastoboSerializer
from .base import BaseSerializer


class OboSerializer(FastoboSerializer, BaseSerializer):

    format = "obo"

    def dump(self, file):
        writer = io.TextIOWrapper(file)
        try:
            # dump the header
            if self.ont.metadata:
                header = self._to_header_frame(self.ont.metadata)
                file.write(str(header).encode("utf-8"))
                if self.ont._terms or self.ont._relationships:
                    file.write(b"\n")
            # dump terms
            if self.ont._terms:
                for i, id in enumerate(sorted(self.ont._terms)):
                    data = self.ont._terms[id]
                    frame = self._to_term_frame(Term(self.ont, data))
                    file.write(str(frame).encode("utf-8"))
                    if i < len(self.ont._terms) - 1 or self.ont._relationships:
                        file.write(b"\n")
            # dump typedefs
            if self.ont._relationships:
                for i, id in enumerate(sorted(self.ont._relationships)):
                    data = self.ont._relationships[id]
                    frame = self._to_typedef_frame(Relationship(self.ont, data))
                    file.write(str(frame).encode("utf-8"))
                    if i < len(self.ont._relationships) - 1:
                        file.write(b"\n")
        finally:
            writer.detach()
