
<!-- This model card has been generated automatically according to the information the Trainer had access to. You
should probably proofread and complete it, then remove this comment. -->

# biobert-finetuned-ncbi

This model is a fine-tuned version of [dmis-lab/biobert-v1.1](https://huggingface.co/dmis-lab/biobert-v1.1) on the ncbi_disease dataset.
It achieves the following results on the evaluation set:
- Loss: 0.0590
- Precision: 0.8193
- Recall: 0.8640
- F1: 0.8411
- Accuracy: 0.9856

## Model description

More information needed

## Intended uses & limitations

More information needed

## Training and evaluation data

More information needed

## Training procedure

### Training hyperparameters

The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 8
- eval_batch_size: 8
- seed: 42
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
- lr_scheduler_type: linear
- num_epochs: 3

### Training results

| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1     | Accuracy |
|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
| 0.1049        | 1.0   | 680  | 0.0588          | 0.7826    | 0.7776 | 0.7801 | 0.9806   |
| 0.0362        | 2.0   | 1360 | 0.0539          | 0.8084    | 0.8577 | 0.8323 | 0.9852   |
| 0.0109        | 3.0   | 2040 | 0.0590          | 0.8193    | 0.8640 | 0.8411 | 0.9856   |


### Framework versions

- Transformers 4.25.1
- Pytorch 1.13.1+cu116
- Datasets 2.8.0
- Tokenizers 0.13.2

{"tags": ["generated_from_trainer"], "datasets": ["ncbi_disease"], "metrics": ["precision", "recall", "f1", "accuracy"], "model-index": [{"name": "biobert-finetuned-ncbi", "results": [{"task": {"type": "token-classification", "name": "Token Classification"}, "dataset": {"name": "ncbi_disease", "type": "ncbi_disease", "config": "ncbi_disease", "split": "train", "args": "ncbi_disease"}, "metrics": [{"type": "precision", "value": 0.8192771084337349, "name": "Precision"}, {"type": "recall", "value": 0.8640406607369758, "name": "Recall"}, {"type": "f1", "value": 0.8410636982065552, "name": "F1"}, {"type": "accuracy", "value": 0.9856218100336114, "name": "Accuracy"}]}]}]}
transformers pytorch tensorboard bert token-classification generated_from_trainer dataset:ncbi_disease model-index autotrain_compatible endpoints_compatible has_space region:us
TAGS
#transformers #pytorch #tensorboard #bert #token-classification #generated_from_trainer #dataset-ncbi_disease #model-index #autotrain_compatible #endpoints_compatible #has_space #region-us 

biobert-finetuned-ncbi
======================


This model is a fine-tuned version of dmis-lab/biobert-v1.1 on the ncbi\_disease dataset.
It achieves the following results on the evaluation set:


* Loss: 0.0590
* Precision: 0.8193
* Recall: 0.8640
* F1: 0.8411
* Accuracy: 0.9856


Model description
-----------------


More information needed


Intended uses & limitations
---------------------------


More information needed


Training and evaluation data
----------------------------


More information needed


Training procedure
------------------


### Training hyperparameters


The following hyperparameters were used during training:


* learning\_rate: 2e-05
* train\_batch\_size: 8
* eval\_batch\_size: 8
* seed: 42
* optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
* lr\_scheduler\_type: linear
* num\_epochs: 3


### Training results



### Framework versions


* Transformers 4.25.1
* Pytorch 1.13.1+cu116
* Datasets 2.8.0
* Tokenizers 0.13.2



### Training hyperparameters


The following hyperparameters were used during training:


* learning\_rate: 2e-05
* train\_batch\_size: 8
* eval\_batch\_size: 8
* seed: 42
* optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
* lr\_scheduler\_type: linear
* num\_epochs: 3 ### Training results ### Framework versions


* Transformers 4.25.1
* Pytorch 1.13.1+cu116
* Datasets 2.8.0
* Tokenizers 0.13.2
TAGS
#transformers #pytorch #tensorboard #bert #token-classification #generated_from_trainer #dataset-ncbi_disease #model-index #autotrain_compatible #endpoints_compatible #has_space #region-us 
 ### Training hyperparameters


The following hyperparameters were used during training:


* learning\_rate: 2e-05
* train\_batch\_size: 8
* eval\_batch\_size: 8
* seed: 42
* optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
* lr\_scheduler\_type: linear
* num\_epochs: 3 ### Training results ### Framework versions


* Transformers 4.25.1
* Pytorch 1.13.1+cu116
* Datasets 2.8.0
* Tokenizers 0.13.2
TAGS
#transformers #pytorch #tensorboard #bert #token-classification #generated_from_trainer #dataset-ncbi_disease #model-index #autotrain_compatible #endpoints_compatible #has_space #region-us 
### Training hyperparameters


The following hyperparameters were used during training:


* learning\_rate: 2e-05
* train\_batch\_size: 8
* eval\_batch\_size: 8
* seed: 42
* optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
* lr\_scheduler\_type: linear
* num\_epochs: 3### Training results### Framework versions


* Transformers 4.25.1
* Pytorch 1.13.1+cu116
* Datasets 2.8.0
* Tokenizers 0.13.2