# Schutz 2008 PubMed dataset for keyphrase extraction
## About
  
This dataset is made of 1320 articles with full text and author assigned keyphrases.

Details about the dataset can be found in the original paper:
Keyphrase extraction from single documents in the open domain exploiting linguistic and statistical methods. Alexander Thorsten Schutz. Master's thesis, National University of Ireland (2008).

  
Reference (indexer-assigned) keyphrases are also categorized under the PRMU (<u>P</u>resent-<u>R</u>eordered-<u>M</u>ixed-<u>U</u>nseen) scheme as proposed in the following paper:
 - Florian Boudin and Ygor Gallina. 2021.
   [Redefining Absent Keyphrases and their Effect on Retrieval Effectiveness](https://aclanthology.org/2021.naacl-main.330/). 
   In Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, pages 4185–4193, Online. Association for Computational Linguistics.
   
Text pre-processing (tokenization) is carried out using spacy (en_core_web_sm model) with a special rule to avoid splitting words with hyphens (e.g. graph-based is kept as one token). Stemming (Porter's stemmer implementation provided in nltk) is applied before reference keyphrases are matched against the source text.   
  
## Content

The details of the dataset are in the table below:

| Split      | # documents | # keyphrases by document (average) | % Present | % Reordered | % Mixed | % Unseen |
| :--------- | ----------: | -----------:                       | --------: | ----------: | ------: | -------: |
| Test       | 1320        |                5.40                |   84.54   | 9.14        | 3.84    |   2.47   |



The following data fields are available:
- **id**: unique identifier of the document.
- **title**: title of the document.
- **text**: full article minus the title.
- **keyphrases**: list of reference keyphrases.
- **prmu**: list of <u>P</u>resent-<u>R</u>eordered-<u>M</u>ixed-<u>U</u>nseen categories for reference keyphrases.

**NB**: The present keyphrases (represented by the "P" label in the PRMU column) are sorted by their apparition order in the text (title + text).


task_categories:text-generation annotations_creators:unknown language_creators:unknown multilinguality:monolingual size_categories:1k<n<10k language:en license:unknown keyphrase-generation keyphrase-extraction text-mining region:us
{"annotations_creators": ["unknown"], "language_creators": ["unknown"], "language": ["en"], "license": ["unknown"], "multilinguality": ["monolingual"], "size_categories": ["1k<n<10k"], "task_categories": ["text-generation"], "task_ids": [], "pretty_name": "PubMed", "tags": ["keyphrase-generation", "keyphrase-extraction", "text-mining"]}
TAGS
#task_categories-text-generation #annotations_creators-unknown #language_creators-unknown #multilinguality-monolingual #size_categories-1k<n<10k #language-English #license-unknown #keyphrase-generation #keyphrase-extraction #text-mining #region-us 

Schutz 2008 PubMed dataset for keyphrase extraction
===================================================


About
-----


This dataset is made of 1320 articles with full text and author assigned keyphrases.


Details about the dataset can be found in the original paper:
Keyphrase extraction from single documents in the open domain exploiting linguistic and statistical methods. Alexander Thorsten Schutz. Master's thesis, National University of Ireland (2008).


Reference (indexer-assigned) keyphrases are also categorized under the PRMU (Present-Reordered-Mixed-Unseen) scheme as proposed in the following paper:


* Florian Boudin and Ygor Gallina. 2021.
Redefining Absent Keyphrases and their Effect on Retrieval Effectiveness.
In Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, pages 4185–4193, Online. Association for Computational Linguistics.


Text pre-processing (tokenization) is carried out using spacy (en\_core\_web\_sm model) with a special rule to avoid splitting words with hyphens (e.g. graph-based is kept as one token). Stemming (Porter's stemmer implementation provided in nltk) is applied before reference keyphrases are matched against the source text.


Content
-------


The details of the dataset are in the table below:



The following data fields are available:


* id: unique identifier of the document.
* title: title of the document.
* text: full article minus the title.
* keyphrases: list of reference keyphrases.
* prmu: list of Present-Reordered-Mixed-Unseen categories for reference keyphrases.


NB: The present keyphrases (represented by the "P" label in the PRMU column) are sorted by their apparition order in the text (title + text).



TAGS
#task_categories-text-generation #annotations_creators-unknown #language_creators-unknown #multilinguality-monolingual #size_categories-1k<n<10k #language-English #license-unknown #keyphrase-generation #keyphrase-extraction #text-mining #region-us 
