/*Owner & Copyrights: Vance King Saxbe. A.*/""" Copyright (c) <2014> Author Vance King Saxbe. A, and contributors Power Dominion Enterprise, Precieux Consulting and other contributors. Modelled, Architected and designed by Vance King Saxbe. A. with the geeks from GoldSax Consulting and GoldSax Technologies email @vsaxbe@yahoo.com. Development teams from Power Dominion Enterprise, Precieux Consulting. Project sponsored by GoldSax Foundation, GoldSax Group and executed by GoldSax Manager."""'''
Modelled, Architected and designed by Vance King Saxbe. A. with the geeks from GoldSax Consulting, GoldSax Money, GoldSax Treasury, GoldSax Finance, GoldSax Banking and GoldSax Technologies email @vsaxbe@yahoo.com. Development teams from Power Dominion Enterprise, Precieux Consulting. Project sponsored by GoldSax Foundation, GoldSax Group and executed by GoldSax Manager.
'''
from numpy import *
from time import sleep

class GoldSaxSVM:
 def loadDataSet(fileName):
    dataMat = []; labelMat = []
    fr = open(fileName)
    for line in fr.readlines():
        lineArr = line.strip().split('\t')
        dataMat.append([float(lineArr[0]), float(lineArr[1])])
        labelMat.append(float(lineArr[2]))
    return dataMat,labelMat

 def selectJrand(i,m):
    j=i #we want to select any J not equal to i
    while (j==i):
        j = int(random.uniform(0,m))
    return j

 def clipAlpha(aj,H,L):
    if aj > H: 
        aj = H
    if L > aj:
        aj = L
    return aj

 def smoSimple(dataMatIn, classLabels, C, toler, maxIter):
    dataMatrix = mat(dataMatIn); labelMat = mat(classLabels).transpose()
    b = 0; m,n = shape(dataMatrix)
    alphas = mat(zeros((m,1)))
    iter = 0
    while (iter < maxIter):
        alphaPairsChanged = 0
        for i in range(m):
            fXi = float(multiply(alphas,labelMat).T*(dataMatrix*dataMatrix[i,:].T)) + b
            Ei = fXi - float(labelMat[i])#if checks if an example violates KKT conditions
            if ((labelMat[i]*Ei < -toler) and (alphas[i] < C)) or ((labelMat[i]*Ei > toler) and (alphas[i] > 0)):
                j = selectJrand(i,m)
                fXj = float(multiply(alphas,labelMat).T*(dataMatrix*dataMatrix[j,:].T)) + b
                Ej = fXj - float(labelMat[j])
                alphaIold = alphas[i].copy(); alphaJold = alphas[j].copy();
                if (labelMat[i] != labelMat[j]):
                    L = max(0, alphas[j] - alphas[i])
                    H = min(C, C + alphas[j] - alphas[i])
                else:
                    L = max(0, alphas[j] + alphas[i] - C)
                    H = min(C, alphas[j] + alphas[i])
                if L==H: print "L==H"; continue
                eta = 2.0 * dataMatrix[i,:]*dataMatrix[j,:].T - dataMatrix[i,:]*dataMatrix[i,:].T - dataMatrix[j,:]*dataMatrix[j,:].T
                if eta >= 0: print "eta>=0"; continue
                alphas[j] -= labelMat[j]*(Ei - Ej)/eta
                alphas[j] = clipAlpha(alphas[j],H,L)
                if (abs(alphas[j] - alphaJold) < 0.00001): print "j not moving enough"; continue
                alphas[i] += labelMat[j]*labelMat[i]*(alphaJold - alphas[j])#update i by the same amount as j
                                                                        #the update is in the oppostie direction
                b1 = b - Ei- labelMat[i]*(alphas[i]-alphaIold)*dataMatrix[i,:]*dataMatrix[i,:].T - labelMat[j]*(alphas[j]-alphaJold)*dataMatrix[i,:]*dataMatrix[j,:].T
                b2 = b - Ej- labelMat[i]*(alphas[i]-alphaIold)*dataMatrix[i,:]*dataMatrix[j,:].T - labelMat[j]*(alphas[j]-alphaJold)*dataMatrix[j,:]*dataMatrix[j,:].T
                if (0 < alphas[i]) and (C > alphas[i]): b = b1
                elif (0 < alphas[j]) and (C > alphas[j]): b = b2
                else: b = (b1 + b2)/2.0
                alphaPairsChanged += 1
                print "iter: %d i:%d, pairs changed %d" % (iter,i,alphaPairsChanged)
        if (alphaPairsChanged == 0): iter += 1
        else: iter = 0
        print "iteration number: %d" % iter
    return b,alphas

 def kernelTrans(X, A, kTup): #calc the kernel or transform data to a higher dimensional space
    m,n = shape(X)
    K = mat(zeros((m,1)))
    if kTup[0]=='lin': K = X * A.T   #linear kernel
    elif kTup[0]=='rbf':
        for j in range(m):
            deltaRow = X[j,:] - A
            K[j] = deltaRow*deltaRow.T
        K = exp(K/(-1*kTup[1]**2)) #divide in NumPy is element-wise not matrix like Matlab
    else: raise NameError('Houston We Have a Problem -- \
    That Kernel is not recognized')
    return K

class optStruct:
     def __init__(self,dataMatIn, classLabels, C, toler, kTup):  # Initialize the structure with the parameters 
        self.X = dataMatIn
        self.labelMat = classLabels
        self.C = C
        self.tol = toler
        self.m = shape(dataMatIn)[0]
        self.alphas = mat(zeros((self.m,1)))
        self.b = 0
        self.eCache = mat(zeros((self.m,2))) #first column is valid flag
        self.K = mat(zeros((self.m,self.m)))
        for i in range(self.m):
            self.K[:,i] = kernelTrans(self.X, self.X[i,:], kTup)
        
 def calcEk(oS, k):
    fXk = float(multiply(oS.alphas,oS.labelMat).T*oS.K[:,k] + oS.b)
    Ek = fXk - float(oS.labelMat[k])
    return Ek
        
 def selectJ(i, oS, Ei):         #this is the second choice -heurstic, and calcs Ej
    maxK = -1; maxDeltaE = 0; Ej = 0
    oS.eCache[i] = [1,Ei]  #set valid #choose the alpha that gives the maximum delta E
    validEcacheList = nonzero(oS.eCache[:,0].A)[0]
    if (len(validEcacheList)) > 1:
        for k in validEcacheList:   #loop through valid Ecache values and find the one that maximizes delta E
            if k == i: continue #don't calc for i, waste of time
            Ek = calcEk(oS, k)
            deltaE = abs(Ei - Ek)
            if (deltaE > maxDeltaE):
                maxK = k; maxDeltaE = deltaE; Ej = Ek
        return maxK, Ej
    else:   #in this case (first time around) we don't have any valid eCache values
        j = selectJrand(i, oS.m)
        Ej = calcEk(oS, j)
    return j, Ej

 def updateEk(oS, k):#after any alpha has changed update the new value in the cache
    Ek = calcEk(oS, k)
    oS.eCache[k] = [1,Ek]
        
 def innerL(i, oS):
    Ei = calcEk(oS, i)
    if ((oS.labelMat[i]*Ei < -oS.tol) and (oS.alphas[i] < oS.C)) or ((oS.labelMat[i]*Ei > oS.tol) and (oS.alphas[i] > 0)):
        j,Ej = selectJ(i, oS, Ei) #this has been changed from selectJrand
        alphaIold = oS.alphas[i].copy(); alphaJold = oS.alphas[j].copy();
        if (oS.labelMat[i] != oS.labelMat[j]):
            L = max(0, oS.alphas[j] - oS.alphas[i])
            H = min(oS.C, oS.C + oS.alphas[j] - oS.alphas[i])
        else:
            L = max(0, oS.alphas[j] + oS.alphas[i] - oS.C)
            H = min(oS.C, oS.alphas[j] + oS.alphas[i])
        if L==H: print "L==H"; return 0
        eta = 2.0 * oS.K[i,j] - oS.K[i,i] - oS.K[j,j] #changed for kernel
        if eta >= 0: print "eta>=0"; return 0
        oS.alphas[j] -= oS.labelMat[j]*(Ei - Ej)/eta
        oS.alphas[j] = clipAlpha(oS.alphas[j],H,L)
        updateEk(oS, j) #added this for the Ecache
        if (abs(oS.alphas[j] - alphaJold) < 0.00001): print "j not moving enough"; return 0
        oS.alphas[i] += oS.labelMat[j]*oS.labelMat[i]*(alphaJold - oS.alphas[j])#update i by the same amount as j
        updateEk(oS, i) #added this for the Ecache                    #the update is in the oppostie direction
        b1 = oS.b - Ei- oS.labelMat[i]*(oS.alphas[i]-alphaIold)*oS.K[i,i] - oS.labelMat[j]*(oS.alphas[j]-alphaJold)*oS.K[i,j]
        b2 = oS.b - Ej- oS.labelMat[i]*(oS.alphas[i]-alphaIold)*oS.K[i,j]- oS.labelMat[j]*(oS.alphas[j]-alphaJold)*oS.K[j,j]
        if (0 < oS.alphas[i]) and (oS.C > oS.alphas[i]): oS.b = b1
        elif (0 < oS.alphas[j]) and (oS.C > oS.alphas[j]): oS.b = b2
        else: oS.b = (b1 + b2)/2.0
        return 1
    else: return 0

 def smoP(dataMatIn, classLabels, C, toler, maxIter,kTup=('lin', 0)):    #full Platt SMO
    oS = optStruct(mat(dataMatIn),mat(classLabels).transpose(),C,toler, kTup)
    iter = 0
    entireSet = True; alphaPairsChanged = 0
    while (iter < maxIter) and ((alphaPairsChanged > 0) or (entireSet)):
        alphaPairsChanged = 0
        if entireSet:   #go over all
            for i in range(oS.m):        
                alphaPairsChanged += innerL(i,oS)
                print "fullSet, iter: %d i:%d, pairs changed %d" % (iter,i,alphaPairsChanged)
            iter += 1
        else:#go over non-bound (railed) alphas
            nonBoundIs = nonzero((oS.alphas.A > 0) * (oS.alphas.A < C))[0]
            for i in nonBoundIs:
                alphaPairsChanged += innerL(i,oS)
                print "non-bound, iter: %d i:%d, pairs changed %d" % (iter,i,alphaPairsChanged)
            iter += 1
        if entireSet: entireSet = False #toggle entire set loop
        elif (alphaPairsChanged == 0): entireSet = True  
        print "iteration number: %d" % iter
    return oS.b,oS.alphas

 def calcWs(alphas,dataArr,classLabels):
    X = mat(dataArr); labelMat = mat(classLabels).transpose()
    m,n = shape(X)
    w = zeros((n,1))
    for i in range(m):
        w += multiply(alphas[i]*labelMat[i],X[i,:].T)
    return w

 def testRbf(k1=1.3):
    dataArr,labelArr = loadDataSet('testSetRBF.txt')
    b,alphas = smoP(dataArr, labelArr, 200, 0.0001, 10000, ('rbf', k1)) #C=200 important
    datMat=mat(dataArr); labelMat = mat(labelArr).transpose()
    svInd=nonzero(alphas.A>0)[0]
    sVs=datMat[svInd] #get matrix of only support vectors
    labelSV = labelMat[svInd];
    print "there are %d Support Vectors" % shape(sVs)[0]
    m,n = shape(datMat)
    errorCount = 0
    for i in range(m):
        kernelEval = kernelTrans(sVs,datMat[i,:],('rbf', k1))
        predict=kernelEval.T * multiply(labelSV,alphas[svInd]) + b
        if sign(predict)!=sign(labelArr[i]): errorCount += 1
    print "the training error rate is: %f" % (float(errorCount)/m)
    dataArr,labelArr = loadDataSet('testSetRBF2.txt')
    errorCount = 0
    datMat=mat(dataArr); labelMat = mat(labelArr).transpose()
    m,n = shape(datMat)
    for i in range(m):
        kernelEval = kernelTrans(sVs,datMat[i,:],('rbf', k1))
        predict=kernelEval.T * multiply(labelSV,alphas[svInd]) + b
        if sign(predict)!=sign(labelArr[i]): errorCount += 1    
    print "the test error rate is: %f" % (float(errorCount)/m)    
    
 def img2vector(filename):
    returnVect = zeros((1,1024))
    fr = open(filename)
    for i in range(32):
        lineStr = fr.readline()
        for j in range(32):
            returnVect[0,32*i+j] = int(lineStr[j])
    return returnVect

 def loadImages(dirName):
    from os import listdir
    hwLabels = []
    trainingFileList = listdir(dirName)           #load the training set
    m = len(trainingFileList)
    trainingMat = zeros((m,1024))
    for i in range(m):
        fileNameStr = trainingFileList[i]
        fileStr = fileNameStr.split('.')[0]     #take off .txt
        classNumStr = int(fileStr.split('_')[0])
        if classNumStr == 9: hwLabels.append(-1)
        else: hwLabels.append(1)
        trainingMat[i,:] = img2vector('%s/%s' % (dirName, fileNameStr))
    return trainingMat, hwLabels    

 def testDigits(kTup=('rbf', 10)):
    dataArr,labelArr = loadImages('trainingDigits')
    b,alphas = smoP(dataArr, labelArr, 200, 0.0001, 10000, kTup)
    datMat=mat(dataArr); labelMat = mat(labelArr).transpose()
    svInd=nonzero(alphas.A>0)[0]
    sVs=datMat[svInd] 
    labelSV = labelMat[svInd];
    print "there are %d Support Vectors" % shape(sVs)[0]
    m,n = shape(datMat)
    errorCount = 0
    for i in range(m):
        kernelEval = kernelTrans(sVs,datMat[i,:],kTup)
        predict=kernelEval.T * multiply(labelSV,alphas[svInd]) + b
        if sign(predict)!=sign(labelArr[i]): errorCount += 1
    print "the training error rate is: %f" % (float(errorCount)/m)
    dataArr,labelArr = loadImages('testDigits')
    errorCount = 0
    datMat=mat(dataArr); labelMat = mat(labelArr).transpose()
    m,n = shape(datMat)
    for i in range(m):
        kernelEval = kernelTrans(sVs,datMat[i,:],kTup)
        predict=kernelEval.T * multiply(labelSV,alphas[svInd]) + b
        if sign(predict)!=sign(labelArr[i]): errorCount += 1    
    print "the test error rate is: %f" % (float(errorCount)/m) 


'''#######********************************
Non-Kernel VErsions below
'''#######********************************

class optStructK:
     def __init__(self,dataMatIn, classLabels, C, toler):  # Initialize the structure with the parameters 
        self.X = dataMatIn
        self.labelMat = classLabels
        self.C = C
        self.tol = toler
        self.m = shape(dataMatIn)[0]
        self.alphas = mat(zeros((self.m,1)))
        self.b = 0
        self.eCache = mat(zeros((self.m,2))) #first column is valid flag
        
 def calcEkK(oS, k):
    fXk = float(multiply(oS.alphas,oS.labelMat).T*(oS.X*oS.X[k,:].T)) + oS.b
    Ek = fXk - float(oS.labelMat[k])
    return Ek
        
 def selectJK(i, oS, Ei):         #this is the second choice -heurstic, and calcs Ej
    maxK = -1; maxDeltaE = 0; Ej = 0
    oS.eCache[i] = [1,Ei]  #set valid #choose the alpha that gives the maximum delta E
    validEcacheList = nonzero(oS.eCache[:,0].A)[0]
    if (len(validEcacheList)) > 1:
        for k in validEcacheList:   #loop through valid Ecache values and find the one that maximizes delta E
            if k == i: continue #don't calc for i, waste of time
            Ek = calcEk(oS, k)
            deltaE = abs(Ei - Ek)
            if (deltaE > maxDeltaE):
                maxK = k; maxDeltaE = deltaE; Ej = Ek
        return maxK, Ej
    else:   #in this case (first time around) we don't have any valid eCache values
        j = selectJrand(i, oS.m)
        Ej = calcEk(oS, j)
    return j, Ej

 def updateEkK(oS, k):#after any alpha has changed update the new value in the cache
    Ek = calcEk(oS, k)
    oS.eCache[k] = [1,Ek]
        
 def innerLK(i, oS):
    Ei = calcEk(oS, i)
    if ((oS.labelMat[i]*Ei < -oS.tol) and (oS.alphas[i] < oS.C)) or ((oS.labelMat[i]*Ei > oS.tol) and (oS.alphas[i] > 0)):
        j,Ej = selectJ(i, oS, Ei) #this has been changed from selectJrand
        alphaIold = oS.alphas[i].copy(); alphaJold = oS.alphas[j].copy();
        if (oS.labelMat[i] != oS.labelMat[j]):
            L = max(0, oS.alphas[j] - oS.alphas[i])
            H = min(oS.C, oS.C + oS.alphas[j] - oS.alphas[i])
        else:
            L = max(0, oS.alphas[j] + oS.alphas[i] - oS.C)
            H = min(oS.C, oS.alphas[j] + oS.alphas[i])
        if L==H: print "L==H"; return 0
        eta = 2.0 * oS.X[i,:]*oS.X[j,:].T - oS.X[i,:]*oS.X[i,:].T - oS.X[j,:]*oS.X[j,:].T
        if eta >= 0: print "eta>=0"; return 0
        oS.alphas[j] -= oS.labelMat[j]*(Ei - Ej)/eta
        oS.alphas[j] = clipAlpha(oS.alphas[j],H,L)
        updateEk(oS, j) #added this for the Ecache
        if (abs(oS.alphas[j] - alphaJold) < 0.00001): print "j not moving enough"; return 0
        oS.alphas[i] += oS.labelMat[j]*oS.labelMat[i]*(alphaJold - oS.alphas[j])#update i by the same amount as j
        updateEk(oS, i) #added this for the Ecache                    #the update is in the oppostie direction
        b1 = oS.b - Ei- oS.labelMat[i]*(oS.alphas[i]-alphaIold)*oS.X[i,:]*oS.X[i,:].T - oS.labelMat[j]*(oS.alphas[j]-alphaJold)*oS.X[i,:]*oS.X[j,:].T
        b2 = oS.b - Ej- oS.labelMat[i]*(oS.alphas[i]-alphaIold)*oS.X[i,:]*oS.X[j,:].T - oS.labelMat[j]*(oS.alphas[j]-alphaJold)*oS.X[j,:]*oS.X[j,:].T
        if (0 < oS.alphas[i]) and (oS.C > oS.alphas[i]): oS.b = b1
        elif (0 < oS.alphas[j]) and (oS.C > oS.alphas[j]): oS.b = b2
        else: oS.b = (b1 + b2)/2.0
        return 1
    else: return 0

 def smoPK(dataMatIn, classLabels, C, toler, maxIter):    #full Platt SMO
    oS = optStruct(mat(dataMatIn),mat(classLabels).transpose(),C,toler)
    iter = 0
    entireSet = True; alphaPairsChanged = 0
    while (iter < maxIter) and ((alphaPairsChanged > 0) or (entireSet)):
        alphaPairsChanged = 0
        if entireSet:   #go over all
            for i in range(oS.m):        
                alphaPairsChanged += innerL(i,oS)
                print "fullSet, iter: %d i:%d, pairs changed %d" % (iter,i,alphaPairsChanged)
            iter += 1
        else:#go over non-bound (railed) alphas
            nonBoundIs = nonzero((oS.alphas.A > 0) * (oS.alphas.A < C))[0]
            for i in nonBoundIs:
                alphaPairsChanged += innerL(i,oS)
                print "non-bound, iter: %d i:%d, pairs changed %d" % (iter,i,alphaPairsChanged)
            iter += 1
        if entireSet: entireSet = False #toggle entire set loop
        elif (alphaPairsChanged == 0): entireSet = True  
        print "iteration number: %d" % iter
    return oS.b,oS.alphas
/*email to provide support at vancekingsaxbe@powerdominionenterprise.com, businessaffairs@powerdominionenterprise.com, For donations please write to fundraising@powerdominionenterprise.com*/