---
#' Files.
files:
  #' Annotations files.
  annotations:
    #' Raw annotations files.
    raw:
      #' List of spectral matching annotations.
      spectral:
        #' GNPS spectral matching annotations. STRING
        gnps: data/interim/annotations/example_gnps.tsv

    #' List of prepared annotations.
    prepared:
      #' List of prepared structural annotations.
      structural:
        #' Prepared GNPS structural annotations. STRING
        gnps: data/interim/annotations/example_gnpsPrepared.tsv.gz

  #' Libraries files.
  libraries:
    #' Structure organism pairs libraries.
    sop:
      #' Merged structure organism pairs library.
      merged:
        #' Structures libraries.
        structures:
          #' Structures stereo. STRING
          stereo: data/interim/libraries/sop/merged/structures/stereo.tsv.gz

          #' Structures metadata. STRING
          metadata: data/interim/libraries/sop/merged/structures/metadata.tsv.gz

          #' Structures names. STRING
          names: data/interim/libraries/sop/merged/structures/names.tsv.gz

          #' Structures taxonomies.
          taxonomies:
            #' Classyfire structures taxonomy. STRING
            cla: data/interim/libraries/sop/merged/structures/taxonomies/classyfire.tsv.gz

            #' NPClassifier structures taxonomy. STRING
            npc: data/interim/libraries/sop/merged/structures/taxonomies/npc.tsv.gz
