---
#' Files.
files:
  #' Annotations files.
  annotations:
    #' List of filtered annotations. STRING
    filtered:
      - data/interim/annotations/example_annotationsFiltered.tsv.gz

    #' List of prepared annotations.
    prepared:
      #' List of prepared structural annotations.
      structural:
        #' Prepared GNPS structural annotations. STRING
        gnps: data/interim/annotations/example_gnpsPrepared.tsv.gz
        #' Prepared MS1 structural annotations. STRING
        ms1: data/interim/annotations/example_ms1Prepared.tsv.gz
        #' Prepared SIRIUS structural annotations. STRING
        sirius: data/interim/annotations/example_siriusPrepared.tsv.gz
        #' Prepared SPECTRAL structural annotations. STRING
        spectral: data/interim/annotations/example_spectralMatchesPrepared.tsv.gz

  #' Features files.
  features:
    #' Prepared features file. STRING
    prepared: data/interim/features/example_features.tsv.gz

  #' Libraries files.
  libraries:
    #' Temporal libraries. STRING
    temporal:
      #' List of prepared temporal libraries. STRING
      prepared:
        - data/interim/libraries/rt/prepared.tsv.gz

#' MS related parameters.
ms:
  #' Tolerances.
  tolerances:
    #' For retention time.
    rt:
      #' Retention time tolerance for library in minutes. FLOAT
      library: 0.1
