Move pip install

Dockerfile

@@ -1,22 +1,25 @@
 FROM python:3.11
 
 ARG IHDELTA_DB_ARTIFACT_URL=$IHDELTA_DB_ARTIFACT_URL
-ARG GH_TOKEN=$GH_TOKEN
-
-RUN apt update && apt install -y \
-  curl \
-  gpg
-RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg;
-RUN echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | tee /etc/apt/sources.list.d/github-cli.list > /dev/null;
-RUN apt update && apt install -y gh;
-RUN gh --help
-RUN apt install -y jq
-RUN jq --help
-RUN echo ${GH_TOKEN} > mytoken.txt
-RUN ls -l mytoken.txt
+# ARG GH_TOKEN=$GH_TOKEN
+
+# RUN apt update && apt install -y \
+#   curl \
+#   gpg
+# RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg;
+# RUN echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | tee /etc/apt/sources.list.d/github-cli.list > /dev/null;
+# # RUN apt update && apt install -y gh;
+# # RUN gh --help
+# RUN apt install -y jq
+# RUN jq --help
+# # RUN echo ${GH_TOKEN} > mytoken.txt
+# # RUN ls -l mytoken.txt
 
 WORKDIR /code
 
+COPY ./requirements.txt /code/requirements.txt
+RUN pip install --no-cache-dir --upgrade -r /code/requirements.txt
+
 COPY ./downloadartifact.py /code
 RUN --mount=type=secret,id=GH_TOKEN,mode=0444,required=true \
    python /code/downloadartifact.py ${IHDELTA_DB_ARTIFACT_URL} /run/secrets/GH_TOKEN /code/ihdelta.db.zip
@@ -25,9 +28,6 @@ RUN ls -l /code
 # Download ID is set as a space variable 
 # By default it is a download of all Solanum preserved specimen records (c600K)
 
-COPY ./requirements.txt /code/requirements.txt
-
-RUN pip install --no-cache-dir --upgrade -r /code/requirements.txt
 
 # Get ihdelta sqlite db
 ADD https://drive.google.com/uc?export=download&id=1on1yWtPihmWSmuMqmEl1blV2fQVtxI62 /code/ihdelta.db