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Nicky Nicolson
commited on
Commit
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7a26d32
1
Parent(s):
80bafd5
Extract GBIF download ID to variable
Browse files- Dockerfile +3 -2
Dockerfile
CHANGED
@@ -1,5 +1,6 @@
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FROM python:3.11
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WORKDIR /code
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@@ -11,12 +12,12 @@ ADD https://docs.google.com/uc?export=download&id=17mI5W0qiGiBp_RV1jy3QR3KtN7Ah-
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# Download GBIF occurrences and prepare for use with datasette
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RUN mkdir /data
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ADD https://api.gbif.org/v1/occurrence/download/request
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RUN ls -l /data
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RUN unzip /data/gbif-occs.zip -d /data
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RUN ls -l /data
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COPY ./tab2csv.py /code/tab2csv.py
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RUN python tab2csv.py /data
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RUN csvs-to-sqlite /data/gbifocc.csv /code/gbifocc.db
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RUN ls -l /code
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RUN sqlite-utils tables /code/gbifocc.db --counts
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FROM python:3.11
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ARG GBIF_DOWNLOAD_ID="0032228-231002084531237"
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WORKDIR /code
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# Download GBIF occurrences and prepare for use with datasette
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RUN mkdir /data
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ADD https://api.gbif.org/v1/occurrence/download/request/${GBIF_DOWNLOAD_ID}.zip /data/gbif-occs.zip
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RUN ls -l /data
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RUN unzip /data/gbif-occs.zip -d /data
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RUN ls -l /data
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COPY ./tab2csv.py /code/tab2csv.py
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RUN python tab2csv.py /data/${GBIF_DOWNLOAD_ID}.csv /data/gbifocc.csv
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RUN csvs-to-sqlite /data/gbifocc.csv /code/gbifocc.db
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RUN ls -l /code
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RUN sqlite-utils tables /code/gbifocc.db --counts
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