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README.md

@@ -51,10 +51,10 @@ space might still be useful for analysis.
 
 | Metric                  | Training Value | Validation Value |
 |-------------------------|----------------|------------------|
-| Mean Absolute Error | 2.12  | 2.16           |
-| Pearson Correlation | 0.77  | 0.71  |
-| Spearman Correlation | 0.59 | 0.57  |
-| R² (R-Squared) | 0.43  | 0.29      |
+| Mean Absolute Error | 2.10  | 2.22           |
+| Pearson Correlation | 0.78  | 0.70  |
+| Spearman Correlation | 0.60 | 0.56  |
+| R² (R-Squared) | 0.45  | 0.25      |
 
 The gene-wise coefficient of variation summarizes how well variation between different genes is
 preserved by the generated model expression. This value is usually quite high.
@@ -63,10 +63,10 @@ preserved by the generated model expression. This value is usually quite high.
 
 | Metric                  | Training Value |
 |-------------------------|----------------|
-| Mean Absolute Error | 3.93   |
+| Mean Absolute Error | 3.94   |
 | Pearson Correlation | 0.85  |
-| Spearman Correlation | 0.96 |
-| R² (R-Squared) | 0.49  |
+| Spearman Correlation | 0.95 |
+| R² (R-Squared) | 0.46  |
 
 </details>
 
@@ -83,22 +83,22 @@ cell-type.
 
 | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
 | --- | --- | --- | --- | --- | --- | --- | --- |
-| CD4-positive, alpha-beta T cell | 0.90 | 1.71 | 0.59 | 0.87 | 0.15 | 0.84 | 5257.00 |
-| CD8-positive, alpha-beta T cell | 0.92 | 2.88 | 0.57 | 0.79 | 0.18 | 0.74 | 2231.00 |
-| enterocyte of epithelium of small intestine | 0.96 | 2.29 | 0.69 | 0.92 | 0.41 | 0.88 | 1100.00 |
-| B cell | 0.89 | 3.85 | 0.65 | 0.71 | 0.31 | 0.77 | 441.00 |
-| plasma cell | 0.86 | 3.46 | 0.67 | 0.76 | 0.24 | 0.86 | 303.00 |
-| small intestine goblet cell | 0.91 | 3.49 | 0.65 | 0.80 | 0.45 | 0.84 | 300.00 |
-| paneth cell of epithelium of small intestine | 0.89 | 3.90 | 0.67 | 0.77 | 0.45 | 0.85 | 177.00 |
-| intestinal tuft cell | 0.90 | 4.20 | 0.65 | 0.69 | 0.39 | 0.79 | 146.00 |
-| transit amplifying cell of small intestine | 0.84 | 4.23 | 0.64 | 0.73 | 0.42 | 0.82 | 127.00 |
-| fibroblast | 0.77 | 3.77 | 0.71 | 0.85 | 0.59 | 0.90 | 88.00 |
-| intestinal crypt stem cell of small intestine | 0.72 | 3.86 | 0.69 | 0.81 | 0.52 | 0.87 | 71.00 |
-| mast cell | 0.84 | 4.85 | 0.60 | 0.58 | 0.33 | 0.80 | 65.00 |
-| neutrophil | 0.75 | 4.53 | 0.67 | 0.69 | 0.43 | 0.81 | 64.00 |
-| monocyte | 0.78 | 4.43 | 0.70 | 0.76 | 0.46 | 0.86 | 61.00 |
-| gut endothelial cell | 0.58 | 6.02 | 0.59 | 0.59 | 0.42 | 0.80 | 15.00 |
-| intestinal enteroendocrine cell | 0.53 | 5.75 | 0.58 | 0.55 | 0.35 | 0.70 | 12.00 |
+| CD4-positive, alpha-beta T cell | 0.93 | 1.94 | 0.53 | 0.86 | 0.14 | 0.84 | 5257.00 |
+| CD8-positive, alpha-beta T cell | 0.91 | 2.84 | 0.58 | 0.79 | 0.19 | 0.74 | 2231.00 |
+| enterocyte of epithelium of small intestine | 0.95 | 2.36 | 0.67 | 0.91 | 0.41 | 0.87 | 1100.00 |
+| B cell | 0.90 | 3.77 | 0.65 | 0.72 | 0.30 | 0.76 | 441.00 |
+| plasma cell | 0.88 | 3.40 | 0.68 | 0.77 | 0.24 | 0.86 | 303.00 |
+| small intestine goblet cell | 0.89 | 3.70 | 0.63 | 0.79 | 0.46 | 0.84 | 300.00 |
+| paneth cell of epithelium of small intestine | 0.88 | 4.11 | 0.65 | 0.76 | 0.46 | 0.85 | 177.00 |
+| intestinal tuft cell | 0.91 | 4.04 | 0.67 | 0.70 | 0.39 | 0.78 | 146.00 |
+| transit amplifying cell of small intestine | 0.83 | 4.18 | 0.64 | 0.74 | 0.42 | 0.82 | 127.00 |
+| fibroblast | 0.74 | 3.54 | 0.73 | 0.85 | 0.58 | 0.90 | 88.00 |
+| intestinal crypt stem cell of small intestine | 0.78 | 4.04 | 0.68 | 0.80 | 0.52 | 0.87 | 71.00 |
+| mast cell | 0.84 | 4.68 | 0.61 | 0.59 | 0.32 | 0.80 | 65.00 |
+| neutrophil | 0.75 | 4.51 | 0.67 | 0.69 | 0.43 | 0.81 | 64.00 |
+| monocyte | 0.76 | 4.61 | 0.68 | 0.74 | 0.47 | 0.86 | 61.00 |
+| gut endothelial cell | 0.62 | 6.00 | 0.58 | 0.59 | 0.42 | 0.80 | 15.00 |
+| intestinal enteroendocrine cell | 0.54 | 5.52 | 0.60 | 0.57 | 0.34 | 0.69 | 12.00 |
 
 </details>