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README.md

@@ -54,10 +54,10 @@ space might still be useful for analysis.
 
 | Metric                  | Training Value | Validation Value |
 |-------------------------|----------------|------------------|
-| Mean Absolute Error | 0.96  | 1.00           |
-| Pearson Correlation | 0.81  | 0.80  |
-| Spearman Correlation | 0.82 | 0.81  |
-| R² (R-Squared) | 0.58  | 0.56      |
+| Mean Absolute Error | 0.98  | 1.03           |
+| Pearson Correlation | 0.80  | 0.80  |
+| Spearman Correlation | 0.82 | 0.79  |
+| R² (R-Squared) | 0.57  | 0.58      |
 
 The gene-wise coefficient of variation summarizes how well variation between different genes is
 preserved by the generated model expression. This value is usually quite high.
@@ -66,10 +66,10 @@ preserved by the generated model expression. This value is usually quite high.
 
 | Metric                  | Training Value |
 |-------------------------|----------------|
-| Mean Absolute Error | 13.59   |
-| Pearson Correlation | 0.72  |
-| Spearman Correlation | 0.75 |
-| R² (R-Squared) | -0.65  |
+| Mean Absolute Error | 13.38   |
+| Pearson Correlation | 0.73  |
+| Spearman Correlation | 0.76 |
+| R² (R-Squared) | -0.63  |
 
 </details>
 
@@ -86,12 +86,12 @@ cell-type.
 
 | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
 | --- | --- | --- | --- | --- | --- | --- | --- |
-| cardiac muscle cell | 0.95 | 0.51 | 0.80 | 0.98 | 0.41 | 0.93 | 7205.00 |
-| cardiac endothelial cell | 0.99 | 1.03 | 0.74 | 0.94 | 0.31 | 0.90 | 2665.00 |
-| hepatocyte | 0.87 | 0.72 | 0.70 | 0.96 | 0.65 | 0.94 | 1089.00 |
-| fibroblast of cardiac tissue | 0.89 | 2.97 | 0.68 | 0.83 | 0.27 | 0.80 | 250.00 |
-| smooth muscle cell | 0.90 | 3.57 | 0.63 | 0.76 | 0.24 | 0.81 | 222.00 |
-| macrophage | 0.72 | 4.44 | 0.56 | 0.65 | 0.33 | 0.70 | 74.00 |
+| cardiac muscle cell | 0.95 | 0.52 | 0.79 | 0.98 | 0.41 | 0.93 | 7205.00 |
+| cardiac endothelial cell | 0.98 | 1.12 | 0.68 | 0.94 | 0.31 | 0.90 | 2665.00 |
+| hepatocyte | 0.89 | 0.71 | 0.71 | 0.96 | 0.64 | 0.94 | 1089.00 |
+| fibroblast of cardiac tissue | 0.87 | 3.01 | 0.67 | 0.83 | 0.26 | 0.79 | 250.00 |
+| smooth muscle cell | 0.90 | 3.62 | 0.62 | 0.76 | 0.23 | 0.81 | 222.00 |
+| macrophage | 0.68 | 4.49 | 0.55 | 0.64 | 0.33 | 0.70 | 74.00 |
 
 </details>
 
@@ -186,7 +186,7 @@ scvi-tools documentation for details. -->
 If provided by the original uploader, for those interested in understanding or replicating the
 training process, the code is available at the link below.
 
-**Training Code URL**: Not provided by uploader
+**Training Code URL**: https://github.com/YosefLab/scvi-hub-models/blob/main/src/scvi_hub_models/TS_train_all_tissues.ipynb
 
 </details>