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- # maes_microscopy
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  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ # Masked Autoencoders are Scalable Learners of Cellular Morphology
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  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
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+
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+ Paper: https://arxiv.org/abs/2309.16064
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+
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+ ![vit_diff_mask_ratios](https://github.com/recursionpharma/maes_microscopy/assets/109550980/409ac47b-a7d4-4158-b030-a88234e2b21f)
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+
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+ ## Provided code
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+ The baseline Vision Transformer architecture backbone used in this work can be built with the following code snippet from Timm:
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+ ```
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+ import timm.models.vision_transformer as vit
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+
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+ def vit_base_patch16_256(**kwargs):
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+ default_kwargs = dict(
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+ img_size=256,
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+ in_chans=6,
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+ num_classes=0,
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+ fc_norm=None,
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+ class_token=True,
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+ drop_path_rate=0.1,
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+ init_values=0.0001,
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+ block_fn=vit.ParallelScalingBlock,
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+ qkv_bias=False,
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+ qk_norm=True,
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+ )
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+ for k, v in kwargs.items():
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+ default_kwargs[k] = v
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+ return vit.vit_base_patch16_224(**default_kwargs)
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+ ```
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+
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+ Additional code will be released as the date of the workshop gets closer.
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+
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+ ## Provided models
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+ Stay tuned...