GenNet / environment.yml
Alina Fedorova
env via pydantic added
81b5a62
name: gennet
channels:
- anaconda
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- abseil-cpp=20210324.2=h9c3ff4c_0
- absl-py=1.4.0=pyhd8ed1ab_0
- aiohttp=3.7.4.post0=py37h5e8e339_1
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=3.0.1=py_1000
- attrs=23.1.0=pyh71513ae_1
- bcftools=1.14=hde04aa1_1
- binutils_impl_linux-64=2.40=hf600244_0
- blas=1.0=openblas
- blinker=1.6.2=pyhd8ed1ab_0
- brotlipy=0.7.0=py37h540881e_1004
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.5.7=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.0=pyhd8ed1ab_0
- certifi=2023.5.7=pyhd8ed1ab_0
- cffi=1.15.0=py37h036bc23_0
- chardet=4.0.0=py37h89c1867_3
- charset-normalizer=3.1.0=pyhd8ed1ab_0
- click=8.0.4=py37h06a4308_0
- cryptography=37.0.2=py37h38fbfac_0
- gast=0.5.3=pyhd8ed1ab_0
- gcc=12.1.0=h9ea6d83_10
- gcc_impl_linux-64=12.1.0=hea43390_17
- giflib=5.2.1=h36c2ea0_2
- google-auth=2.20.0=pyh1a96a4e_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- google-pasta=0.2.0=pyh8c360ce_0
- grpc-cpp=1.43.2=h9e046d8_3
- grpcio=1.43.0=py37hb27c1af_0
- gsl=2.7=he838d99_0
- h5py=3.6.0=nompi_py37hd308b1e_100
- hdf5=1.12.1=nompi_h2386368_104
- htslib=1.14=h9753748_2
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=4.11.4=py37h89c1867_0
- jpeg=9e=h166bdaf_1
- keras=2.8.0=pyhd8ed1ab_0
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.40=h41732ed_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.83.1=h7bff187_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=12.1.0=h1ec3361_17
- libgcc-ng=13.1.0=he5830b7_0
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=13.1.0=he5830b7_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.47.0=h727a467_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=h043d6bf_0
- libpng=1.6.37=h21135ba_2
- libprotobuf=3.19.4=h780b84a_0
- libsanitizer=12.1.0=ha89aaad_17
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libzlib=1.2.11=h166bdaf_1014
- markdown=3.4.3=pyhd8ed1ab_0
- markupsafe=2.1.1=py37h540881e_1
- multidict=6.0.2=py37h540881e_1
- ncurses=6.3=h27087fc_1
- nomkl=3.0=0
- numpy=1.21.6=py37h976b520_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- openblas=0.3.21=h06a4308_0
- openblas-devel=0.3.21=h06a4308_0
- openssl=1.1.1u=hd590300_0
- opt_einsum=3.3.0=pyhd8ed1ab_1
- perl=5.32.1=4_hd590300_perl5
- pip=23.1.2=pyhd8ed1ab_0
- plink2=2.00a2.3=hb2a7ceb_2
- protobuf=3.19.4=py37hcd2ae1e_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pyjwt=2.7.0=pyhd8ed1ab_0
- pyopenssl=22.0.0=pyhd8ed1ab_1
- pysocks=1.7.1=py37h89c1867_5
- python=3.7.12=hb7a2778_100_cpython
- python-flatbuffers=23.5.26=pyhd8ed1ab_0
- python_abi=3.7=3_cp37m
- pyu2f=0.1.5=pyhd8ed1ab_0
- re2=2022.02.01=h9c3ff4c_0
- readline=8.1=h46c0cb4_0
- requests=2.31.0=pyhd8ed1ab_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- scipy=1.7.3=py37hf2a6cf1_0
- setuptools=68.0.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=hbd366e4_1
- sqlite=3.38.5=h4ff8645_0
- sysroot_linux-64=2.12=he073ed8_15
- tensorboard=2.8.0=pyhd8ed1ab_1
- tensorboard-data-server=0.6.0=py37h38fbfac_2
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- tensorflow=2.8.0=cpu_py37h08536eb_0
- tensorflow-base=2.8.0=cpu_py37h4373017_0
- tensorflow-cpu=2.8.0=cpu_py37h718b53a_0
- tensorflow-estimator=2.8.0=cpu_py37h813ee39_0
- termcolor=2.3.0=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- typing-extensions=4.6.3=hd8ed1ab_0
- typing_extensions=4.6.3=pyha770c72_0
- urllib3=1.26.15=pyhd8ed1ab_0
- werkzeug=2.2.3=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- wrapt=1.14.1=py37h540881e_0
- xz=5.2.5=h516909a_1
- yarl=1.7.2=py37h540881e_2
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.11=h166bdaf_1014
- pip:
- annotated-types==0.5.0
- anyio==3.7.0
- argon2-cffi==21.3.0
- argon2-cffi-bindings==21.2.0
- backcall==0.2.0
- beautifulsoup4==4.12.2
- bitarray==2.7.6
- bleach==6.0.0
- cycler==0.11.0
- debugpy==1.6.7
- decorator==5.1.1
- defusedxml==0.7.1
- entrypoints==0.4
- exceptiongroup==1.1.1
- fastjsonschema==2.17.1
- fonttools==4.38.0
- future==0.18.3
- importlib-resources==5.12.0
- iniconfig==2.0.0
- ipykernel==6.16.2
- ipython==7.34.0
- ipython-genutils==0.2.0
- ipywidgets==8.0.6
- jedi==0.18.2
- jinja2==3.1.2
- joblib==1.2.0
- jsonschema==4.17.3
- jupyter==1.0.0
- jupyter-client==7.4.9
- jupyter-console==6.6.3
- jupyter-core==4.12.0
- jupyter-server==1.24.0
- jupyterlab-pygments==0.2.2
- jupyterlab-widgets==3.0.7
- kaleido==0.2.1
- kiwisolver==1.4.4
- matplotlib==3.5.3
- matplotlib-inline==0.1.6
- mistune==3.0.1
- nbclassic==1.0.0
- nbclient==0.7.4
- nbconvert==7.6.0
- nbformat==5.8.0
- nest-asyncio==1.5.6
- notebook==6.5.4
- notebook-shim==0.2.3
- numexpr==2.8.4
- packaging==23.1
- pandas==1.3.5
- pandocfilters==1.5.0
- parso==0.8.3
- pexpect==4.8.0
- pickleshare==0.7.5
- pillow==9.5.0
- pkgutil-resolve-name==1.3.10
- plink==2.0
- plotly==5.15.0
- pluggy==1.2.0
- prometheus-client==0.17.0
- prompt-toolkit==3.0.38
- psutil==5.9.5
- ptyprocess==0.7.0
- pydantic==2.0.3
- pydantic-core==2.3.0
- pygments==2.15.1
- pyparsing==3.1.0
- pyrsistent==0.19.3
- pytest==7.4.0
- python-dateutil==2.8.2
- python-dotenv==0.21.1
- pytz==2023.3
- pyzmq==25.1.0
- qtconsole==5.4.3
- qtpy==2.3.1
- scikit-learn==1.0.2
- seaborn==0.12.2
- send2trash==1.8.2
- sklearn==0.0.post5
- sniffio==1.3.0
- soupsieve==2.4.1
- tables==3.7.0
- tenacity==8.2.2
- terminado==0.17.1
- threadpoolctl==3.1.0
- tinycss2==1.2.1
- tomli==2.0.1
- tornado==6.2
- tqdm==4.65.0
- traitlets==5.9.0
- wcwidth==0.2.6
- webencodings==0.5.1
- websocket-client==1.6.1
- widgetsnbextension==4.0.7
prefix: /nfs/home/afedorova/miniconda3/envs/gennet