jordyvl commited on
Commit
7443b0a
·
1 Parent(s): 064d556

Training in progress, epoch 1

Browse files
.gitignore ADDED
@@ -0,0 +1 @@
 
 
1
+ checkpoint-*/
config.json ADDED
@@ -0,0 +1,48 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "_name_or_path": "dmis-lab/biobert-base-cased-v1.2",
3
+ "architectures": [
4
+ "BertForTokenClassification"
5
+ ],
6
+ "attention_probs_dropout_prob": 0.1,
7
+ "classifier_dropout": null,
8
+ "hidden_act": "gelu",
9
+ "hidden_dropout_prob": 0.1,
10
+ "hidden_size": 768,
11
+ "id2label": {
12
+ "0": "O",
13
+ "1": "B-Disease",
14
+ "2": "I-Disease"
15
+ },
16
+ "initializer_range": 0.02,
17
+ "intermediate_size": 3072,
18
+ "label2id": {
19
+ "B-Disease": 1,
20
+ "I-Disease": 2,
21
+ "O": 0
22
+ },
23
+ "layer_norm_eps": 1e-12,
24
+ "max_position_embeddings": 512,
25
+ "model_type": "bert",
26
+ "num_attention_heads": 12,
27
+ "num_hidden_layers": 12,
28
+ "pad_token_id": 0,
29
+ "position_embedding_type": "absolute",
30
+ "test_args": {
31
+ "dataset": "ncbi_disease",
32
+ "model": "dmis-lab/biobert-base-cased-v1.2",
33
+ "subword_alignment": "all",
34
+ "task": "ner",
35
+ "train_args": {
36
+ "batch_size": 4,
37
+ "epochs": 3,
38
+ "learning_rate": 2e-05,
39
+ "warmup_ratio": 0.1,
40
+ "weight_decay": 0.01
41
+ }
42
+ },
43
+ "torch_dtype": "float32",
44
+ "transformers_version": "4.18.0",
45
+ "type_vocab_size": 2,
46
+ "use_cache": true,
47
+ "vocab_size": 28996
48
+ }
pytorch_model.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b9a263e2817c4f6655beadf77a2a6d9d2ff381b324c1e1bb93f424465a9f4326
3
+ size 430958385
runs/Jul13_13-07-33_jordy-OMEN/1657710463.6894403/events.out.tfevents.1657710463.jordy-OMEN.89316.1 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:66e42452c6bb93c297f1575c5f1c93fb1afd89fc507b84054f088b28ec19efed
3
+ size 4934
runs/Jul13_13-07-33_jordy-OMEN/events.out.tfevents.1657710463.jordy-OMEN.89316.0 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4407331c0e127cfdcdbcbd47dc147d06e88e2a6f9bf697dba77ab0dae45208c7
3
+ size 4654
special_tokens_map.json ADDED
@@ -0,0 +1 @@
 
 
1
+ {"unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}
tokenizer.json ADDED
The diff for this file is too large to render. See raw diff
 
tokenizer_config.json ADDED
@@ -0,0 +1 @@
 
 
1
+ {"do_lower_case": true, "unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]", "tokenize_chinese_chars": true, "strip_accents": null, "special_tokens_map_file": null, "name_or_path": "dmis-lab/biobert-base-cased-v1.2", "do_basic_tokenize": true, "never_split": null, "tokenizer_class": "BertTokenizer"}
training_args.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5e9eb937d607b493896b51cfb75f4cf948d59506fa10609cc661709def54706a
3
+ size 3119
vocab.txt ADDED
The diff for this file is too large to render. See raw diff