diamandislabii commited on
Commit
839c896
·
verified ·
1 Parent(s): 53ab88b

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +42 -3
README.md CHANGED
@@ -1,3 +1,42 @@
1
- ---
2
- license: apache-2.0
3
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: apache-2.0
3
+ tags:
4
+ - vision
5
+ - image-classification
6
+ ---
7
+
8
+ ### (Testes) Testicular Cancer
9
+
10
+ This model can additionally be run on our [pathology reports platform](https://www.pathologyreports.ai/marketplace/browse/bb5cb477-ad3c-464f-a75d-bbb4ae0d27c9)
11
+
12
+ Credits: Dr. Nikfar Nikzad (McMaster University, Canada)
13
+
14
+ ### Introduction
15
+
16
+ This H&E testicular cancer classifier was developed using transfer learning on a histology optimized version of the VGG19 CNN [(DOI: 10.1038/s42256-019-0068-6)](https://doi.org/10.1038/s42256-019-0068-6) and trained to recognize testicular cancer and other surrounding tissue elements.
17
+
18
+ Annotations were carried out on batches of image tiles (dimensions: 512 x 512 px) grouped using image-based clustering [(HAVOC, DOI: 10.1126/sciadv.adg1894)](https://doi.org/10.1126/sciadv.adg1894) from 10 local H&E-stained whole slide images. Validation testing was carried out on non-overlapping image tiles from the same cases.
19
+
20
+
21
+ ### Classes
22
+
23
+ 1. Mature Epithelial Pattern
24
+ 2. Fibroconnective Tissue
25
+ 3. Mature Meningothelial Histology
26
+ 4. Mature Neural Tissue (Teratoma)
27
+ 5. Normal Hematolymphoid Tissue
28
+ 6. Rete Testis
29
+ 7. Seminiferous Tubules
30
+ 8. Seminoma
31
+ 9. Necrotic Tissue
32
+ 10. Skeletal Muscle Tissue
33
+ 11. Smooth Muscle Tissue
34
+ 12. Keratinous Material
35
+ 13. Yolk Sac Tumor
36
+ 14. Blank space
37
+
38
+ This information can be found in the inference.json file
39
+
40
+ ### Evaluation Metrics
41
+
42
+ Classifier validation can be found on the [pathology reports platform](https://www.pathologyreports.ai/marketplace/browse/bb5cb477-ad3c-464f-a75d-bbb4ae0d27c9)