Rupnik disagreed with all attempts by members of the Slovenian Covenant and some military leaders of the Slovene Home Guard to rise against the Nazis, nor did he intervene when several of his former collaborators were arrested by the Nazis and sent to Dachau concentration camp.
Rupnik nije pristao na pokušaje pripadnika Slovenskog Saveza i nekih vojnih čelnika Slovenskog domobranstva da se dignu protiv nacista, niti je intervenirao kada je nekoliko njegovih bivših suradnika uhićeno od nacista te poslano u logor Dachau.