Summary: The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution.#R##N##R##N#Availability: http://www.hyphy.org#R##N##R##N#Contact: muse@stat.ncsu.edu#R##N##R##N#Supplementary information:HyPhydocumentation and tutorials are available at http://www.hyphy.org
['Sergei L. Kosakovsky Pond', 'Simon D. W. Frost', 'Spencer V. Muse']
HyPhy: hypothesis testing using phylogenies