Thats a unique idea.You should consider the following idea to enhance your idea so that it would impact uniquely: Motivation: Visualization is indispensable in the research of complex biochemical networks. Available graph layout algorithms are not adequate for satisfactorily drawing such networks. New methods are required to visualize automatically the topological architectures and facilitate the understanding of the functions of the networks.#R##N##R##N#Results:  propose a novel layout algorithm to draw complex biochemical networks. A network is modeled as a system of interacting nodes on squared grids. A discrete cost function beten each node pair is designed based on the topological relation and the geometric positions of the two nodes. The layouts are produced by minimizing the total cost.  design a fast algorithm to minimize the discrete cost function, by which candidate layouts can be produced efficiently. A simulated annealing procedure is used to choose better candidates. Our algorithm demonstrates its ability to exhibit cluster structures clearly in relatively compact layout areas without any prior knowledge.  developed Windows software to implement the algorithm for CADLIVE.#R##N##R##N#Availability: All materials can be freely downloaded from http://kurata21.bio.kyutech.ac.jp/grid/grid_layout.htm; http://www.cadlive.jp/#R##N##R##N#Contact: kurata@bio.kyutech.ac.jp#R##N##R##N#Supplementary information:http://kurata21.bio.kyutech.ac.jp/grid/grid_layout.htm; http://www.cadlive.jp/
['Weijiang Li', 'Hiroyuki Kurata']
I am writing a research paper on a idea A grid layout algorithm for automatic drawing of biochemical networks
[{"from": "human", "value": "I am writing a research paper on a idea A grid layout algorithm for automatic drawing of biochemical networks"}, {"from": "gpt", "value": "Thats a unique idea.You should consider the following idea to enhance your idea so that it would impact uniquely: Motivation: Visualization is indispensable in the research of complex biochemical networks. Available graph layout algorithms are not adequate for satisfactorily drawing such networks. New methods are required to visualize automatically the topological architectures and facilitate the understanding of the functions of the networks.#R##N##R##N#Results:  propose a novel layout algorithm to draw complex biochemical networks. A network is modeled as a system of interacting nodes on squared grids. A discrete cost function beten each node pair is designed based on the topological relation and the geometric positions of the two nodes. The layouts are produced by minimizing the total cost.  design a fast algorithm to minimize the discrete cost function, by which candidate layouts can be produced efficiently. A simulated annealing procedure is used to choose better candidates. Our algorithm demonstrates its ability to exhibit cluster structures clearly in relatively compact layout areas without any prior knowledge.  developed Windows software to implement the algorithm for CADLIVE.#R##N##R##N#Availability: All materials can be freely downloaded from http://kurata21.bio.kyutech.ac.jp/grid/grid_layout.htm; http://www.cadlive.jp/#R##N##R##N#Contact: kurata@bio.kyutech.ac.jp#R##N##R##N#Supplementary information:http://kurata21.bio.kyutech.ac.jp/grid/grid_layout.htm; http://www.cadlive.jp/"}]