Thats a unique idea.You should consider the following idea to enhance your idea so that it would impact uniquely: Motivation: Remote homology detection is the problem of detecting homology in cases of low sequence similarity. It is a hard computational problem with no approach that works ll in all cases. Results:  present a method for detecting remote homology that is based on the presence of discrete sequence motifs. The motif content of a pair of sequences is used to define a similarity that is used as a kernel for a Support Vector Machine (SVM) classifier.  test the method on two remote homology detection tasks: prediction of a previously unseen SCOP family and prediction of an enzyme class given other enzymes that have a similar function on other substrates.  find that it performs significantly better than an SVM method that uses BLAST or Smith-Waterman similarity scores as
['Asa Ben-Hur', 'Douglas L. Brutlag']
I am writing a research paper on a idea Remote homology detection: a motif based approach.
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