text: Chantry Chapel of St Mary the Virgin, Wakefield, West Yorkshire (1842)
  Cathedrals
  Ely Cathedral (1847–78)
  Gloucester Cathedral (1854–76)
  Peterborough Cathedral (1855–60)
  Coventry Cathedral (1855–57)
  Hereford Cathedral east side (1855–63)
  Lichfield Cathedral (1855–61 & 1877–81)
  Wakefield Cathedral (1858–60, 1865–69 and 1872–74)
  Durham Cathedral (1859 and 1874–76)
  Brecon Cathedral (1860–62 & 1872–75)
  Canterbury Cathedral (1860 & 1877–80)
  Chichester Cathedral (1861–67 & 1872)
  Ripon Cathedral (1862–72)
  St Edmundsbury Cathedral (1863–64 & 1867–69)
  Worcester Cathedral (1863–64, 1868 & 1874)
  St David's Cathedral, St Davids, Wales (1864–76)
  Salisbury Cathedral (1865–71)
  St Asaph Cathedral (1866–69 & 1871)
  Newcastle Cathedral (1867–71 & 1872–76)
  Chester Cathedral (1868–75)
  Exeter Cathedral (1869–70)
  Christ Church, Oxford east wall of choir (1870–72 & 1874–76)
  Rochester Cathedral (1871–74)
  St Albans Cathedral (1871–80)
  Manchester Cathedral (c. 1872)
  Winchester Cathedral (1875)
  Additionally, Scott designed the Mason and Dixon monument in York Minster (1860), prepared plans for the restoration of Bristol Cathedral in 1859 and Norwich Cathedral in 1860 neither of which resulted in a commission, and designed a pulpit for Lincoln Cathedral in 1863.
  Abbeys, priories and collegiate churches
  St Mary's Church, Stafford, 1842–45
  Beverley Minster 1844, 1866–68, 1877
  Westminster Abbey, 1848–78
  Dorchester Abbey, 1858, 1862, 1874
  King's College, Cambridge, 1859–63, 1875
  Bath Abbey, 1860–77
  Pershore Abbey, 1861–64, 1867
  St George's Chapel, Windsor Castle, 1863