Rub is related to Disappear. Disappear is similar to Vanish. Vanish is the opposite of Appear. 
Apply is related to Red. Red is related to Bean. 
Rub <--RelatedTo--> Disappear <--SimilarTo--> Vanish <--Antonym--> Appear 
Apply <--RelatedTo--> Red <--RelatedTo--> Bean 