  Encoding a qubit in a high quality superconducting microwave cavity offers the opportunity to perform the first layer of error correction in a single device, but presents a challenge: how can quantum oscillators be controlled while introducing a minimal number of additional error channels? We focus on the two-qubit portion of this control problem by using a 3-wave mixing coupling element to engineer a programmable beamsplitter interaction between two bosonic modes separated by more than an octave in frequency, without introducing major additional sources of decoherence. Combining this with single-oscillator control provided by a dispersively coupled transmon provides a framework for quantum control of multiple encoded qubits. The beamsplitter interaction $g_\text{bs}$ is fast relative to the timescale of oscillator decoherence, enabling over $10^3$ beamsplitter operations per coherence time, and approaching the typical rate of the dispersive coupling $\chi$ used for individual oscillator control. Further, the programmable coupling is engineered without adding unwanted interactions between the oscillators, as evidenced by the high on-off ratio of the operations, which can exceed $10^5$. We then introduce a new protocol to realize a hybrid controlled-SWAP operation in the regime $g_{bs}\approx\chi$, in which a transmon provides the control bit for the SWAP of two bosonic modes. Finally, we use this gate in a SWAP test to project a pair of bosonic qubits into a Bell state with measurement-corrected fidelity of $95.5\% \pm 0.2\%$. 
A high on-off ratio beamsplitter interaction for gates on bosonically   encoded qubits