What proportion of planetary systems have been found with 'Hot Jupiters' According to the NASA website "The strange attraction of Hot Jupiters", one of the main types of exoplanets that have been detected are Hot Jupiters, which are 


  These are behemoth worlds that orbit close to their parent stars, blocking a fraction of the star’s light when it transits in front.


Planets that are from as large as Saturn through to far larger than Jupiter, orbiting in a matter of days very close to their parent star.  Something our solar system does not have.

What proportion of star systems have Hot Jupiters within their systems?  Is it a case that Hot-Jupiter-less systems such as our own are unusual?
In 2011, about 20% of the exoplanets found were hot Jupiters. That is a lot, but it is strongly biased simply because there are the easiest planets to detect. You can detect exoplanets by transit (that means that the planet passes in front of its host star which decreases the luminosity of the observed star during the transit), hot Jupiters being closer to their host star and bigger than smaller planets will therefore be easier to detect. You can detect exoplanets by radial velocity, which means that you detect variation of the position of the host star due to planet's gravity. The closer and the heavier the planet is, the larger the variation will be, and therefore the easier to detect.

That's why it is important to say "In 2011"; as our detection techniques (and telescopes) improve, the proportion of hot Jupiters should decreases.

Edit:
To put that in perspective, you can read this article from Jason Wright in which he tries to estimate the "real" ratio of hot Jupiters orbiting around "normal" stars (F, G and K type stars). This ratio is actually much smaller than the currently observed ratio, about 1.2%.