Where can I find a catalog of all stars in the Milky Way? Is there a catalog of all known stars or brightest stars in our galaxy? Preferably with some sort of galactic coordinates instead of just night sky coordinates (right ascension, etc.) I'm trying to make a model of the milky way, explorable with an oculus rift.
Hipparcos, the predecessor to Gaia, has a dataset (http://cdsarc.u-strasbg.fr/viz-bin/Cat?I/239) with 3D positions for 100,000 stars. While we have much larger datasets of galactic stars, such as SDSS, finding the distances to stars is much harder. Parallax is the most precise technique for finding distances. Even for Gaia, we will only be able to measure distances to 10% precisions.

There is a "galactic coordinate system", but that stil has the sun at the center and the line between the sun and the galactic center as its reference. There are calculators that can convert RA and Dec to galactic coordinates (e.g. http://python4astronomers.github.io/astropy/coordinates.html). You can use that and the distance to place them in space.