Let $k$ be a field with separable algebraic closure $k^{\rm s}$ and corresponding absolute Galois group $\varGamma={\rm Gal}(k^{\rm s}/\,k)$ and let $X$ and $Y$ be geometrically connected and geometrically reduced $k$-schemes locally of finite type. 



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> **Question.** Are there examples where the canonical map $(\,{\rm Pic}\,X^{\rm s})^{\varGamma}\oplus(\,{\rm Pic}\,Y^{\rm s})^{\varGamma}\to{\rm Pic}\,(X^{s}\times\_{\,k^{\rm s}}Y^{\rm s})^{\varGamma}$ is an isomorphism but the map ${\rm Pic}\,X^{\rm s}\oplus{\rm Pic}\,Y^{\rm s}\hookrightarrow{\rm Pic}\,(X^{s}\times\_{k^{\rm s}}Y^{\rm s})$ is not?
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It is known that, if $X$ and $Y$ are smooth, projective, geometrically irreducible and of finite type over $k$, then the cokernel of the latter map is naturally isomorphic to ${\rm Hom}({\rm Pic}\_{ Y^{\rm s}}^{\vee},{\rm Pic}\_{X^{\rm s}})$, where ${\rm Pic}\_{X^{\rm s}}$ is the Picard variety of $X^{\rm s}$ (i.e., the largest reduced subscheme of the identity component of the Picard scheme of $X^{\rm s}$ over $k^{\rm s}$) and ${\rm Pic}\_{Y^{\rm s}}^{\vee}$ is the dual of ${\rm Pic}\_{Y^{\rm s}}$. Thus, while looking for such examples, one should assume that ${\rm Pic}\_{Z}\neq 0$ for $Z=X^{s}$ and $Y^{s}$, in particular that $H^{1}(Z,\mathcal O\_{Z})\neq 0$ for such $Z$ (a condition which excludes the rational varieties).



Galois invariant line bundles on a product of varieties
Take $X$ a non-CM elliptic curve over $k$ (over finite fields, a similar argument involving ordinary curves will work) and $Y$ its quadratic twist over some quadratic extension of $k$.


$X$ and $Y$ are smooth, projective, geometrically irreducible and of finite type over $k$, so as you note there is an exact sequence $$0 \to ( \operatorname{Pic} X^s \oplus \operatorname{Pic} Y^s \to \operatorname{Pic} (X^s \times Y^s) \to \operatorname{Hom} ( \operatorname{Pic}^0(Y^{\vee s}), \operatorname{Pic}^0(X^s)) \to 0$$


I have written the Picard varieties as $ \operatorname{Pic}^0$ to distinguish them from Picard groups. 


This implies, by the left exactness of $G \mapsto G^\Gamma$, an exact sequence.


$$0 \to (\operatorname{Pic} X^s)^\Gamma \oplus (\operatorname{Pic} Y^s)^\Gamma \to (\operatorname{Pic} (X^s \times Y^s))^\Gamma \to (\operatorname{Hom} ( \operatorname{Pic}^0(Y^{\vee s}), \operatorname{Pic}^0(X^s)))^\Gamma$$


So it suffices to check that $\operatorname{Hom} ( \operatorname{Pic}^0(Y^{\vee s}), \operatorname{Pic}^0(X^s)) \neq 0$ but $(\operatorname{Hom} ( \operatorname{Pic}^0(Y^{\vee s}), \operatorname{Pic}^0(X^s)))^\Gamma=0$, so that the second exact sequence becomes 


$$0 \to \operatorname{Pic} X^s)^\Gamma \oplus (\operatorname{Pic} Y^s)^\Gamma \to (\operatorname{Pic} (X^s \times Y^s))^\Gamma \to 0.$$


To do this, observe that, because $X$ and $Y$ are elliptic curves, they are their own $\operatorname{Pic}^0$, and are also self-dual, so we are just working with $\operatorname{Hom}(Y^s, X^s)$. Because $Y^s$ and $X^s$ are isomorphic, and are a non-CM elliptic curve $\operatorname{Hom}(Y^s, X^s) = \mathbb Z$. The quadratic twisting means exactly that the Galois action on this is by the quadratic character of the corresponding field extension, and in particular the invariants are trivial, as desired.


