This question is related to the question: [Is there a $k$-structure for Hodge modules over a $k$-variety?](https://mathoverflow.net/questions/45948/is-there-a-k-structure-for-hodge-modules-over-a-k-variety).


Suppose $K$ is a subfield of $\mathbb{C}$ and $M$ is a holonomic $D$-module "of geometric origin" on a smooth scheme $X/K$. By Saito's theory, the base-changed $D$-module $M\_{\mathbb{C}}$ on $X\underset{\operatorname{Spec}(K)}\times \operatorname{Spec}(\mathbb{C})$ carries a natural mixed Hodge module structure.


An ill-formed question: how does the $K$-rational structure on $M\_{\mathbb{C}}$ interact with the Hodge structures? 


Here are some precise incarnations of that question. Saito's theory endows $M\_{\mathbb{C}}$ with the weight filtration $W$ (by $D$-submodules) and a Hodge filtration (compatible with the filtration on differential operators). Are $W$ and $F$ defined over $K$? Or, a seemingly weaker question: does the action of $\operatorname{Gal}(\mathbb{C}/F)$ on (the mixed Hodge module of) de Rham cohomology of $M\_{\mathbb{C}}$ preserve the induced filtrations on de Rham cohomology? (This is readily verified when $M=\mathcal{O}\_X$).



Hodge theory and varieties defined over subfields of the complex numbers
Take a look at section 1 of
 M. Saito, Arithmetic mixed sheaves, Inventiones 2001. Part of the data
for an object in his category $MHM(X/K)$ is a bifiltered $D$-module defined over $K$. So it seems that your question has a positive answer. But as always with this stuff, it is easy to overlook something. If it's really important to you, you should ask Saito directly 
(he's not on Mathoverflow as far as I know). Alternatively, as Matthew Emerton has suggested, it may be simpler to work out the cases you need by hand. 


