11284958
Peptide identification by tandem mass spectra: an efficient parallel searching
De novo peptide sequencing that determines the amino acid sequence of a peptide via tandem mass spectrometry (MS/MS) has been increasingly used nowadays in proteomics for protein identification. Current de novo methods generally employ a graph theory which usually produces a large number of candidate sequences and causes heavy computational cost while trying to determine a sequence with less ambiguity. We present a novel de novo sequencing algorithm which greatly reduces the number of candidate sequences. By utilizing certain properties of b- and y-ion series in MS/MS spectrum, we propose a reliable two-way parallel searching algorithm to filter out the peptide candidates which are further pruned by an intensity evidence based screening criterion. And we find an adjusted value required to determine the position of end node of b- and y-ion series for the charged +2 precursor in our graph. Results of our algorithm are compared with those of PEAKS, a well-known de novo sequencing software. Experimental results demonstrate the six sequences are identical with the correct sequences. And for the further pruning, rankings of our result remain unchanged even though the screening criterion changes. Therefore we can reduce the number of candidate sequences by adopting a proper screening criterion.
39022820
A multi-Kalman filtering approach for video tracking of human-delineated objects in cluttered environments
13951367
Interactive color image segmentation editor driven by active contour model
A new general-purpose color image segmentation editor (CISE) for the purpose of extracting a semantic object is designed, implemented and tested on a number of various natural scene images. Our editor integrates a deformable model and image statistics including intensity, color, gradient and texture. The editor starts with a coarse region segmentation which applies the Canny's operator followed by a low-complexity edge linking algorithm. This segmentation basically builds regions of smooth intensity by closing all dangling edges. Next, a topologically-based region labeling method makes full use of relationship among pixels and produces useful labeled image. Finally, to refine the extracted object of interest (O/sup 2/I), a deformable model based on energy minimization is applied by incorporating both the gradient and region criteria to the external constraint force. These processes are demonstrated through examples on natural scene color images. Experimental results suggest the efficiency and accuracy of the algorithm in its segmentation operations.
18339723
Automatic video object shape extraction and its classification with camera in motion
In this paper, we present an automatic moving object extraction and classification system. For automatic extraction of object taken by a moving camera, a novel technique is proposed, in which optical flow handles the background modeling and camera motion estimation, and frame difference information yields the exact object shape. We also use forward region boundary based change detection approach for frame difference. This approach assures change detection for uniform intensity regions. For classification, weighted likelihood discriminant based shape classifier is designed. Unlike maximum likelihood (ML) methods, our proposed method utilizes information from all classes to design the classifier. In the description phase of the classifier, curvature features are extracted from the shape and are utilized to build a hidden Markov model (HMM). The HMM provides a robust ML description of the shape. In the discrimination phase, a weighted likelihood discriminant function is introduced, which weights the likelihoods of curvature at individual points of the shape to minimize the classification error. The weights are estimated by generalized probabilistic descent (GPD) method. To demonstrate the performance of the proposed method, we present results achieved for car shapes extraction and classification.
14630821
A New Semi-Supervised Subspace Clustering Algorithm on Fitting Mixture Models
We propose a new subspace clustering algorithm (EPSCMIX), which is based on the feature saliency measure that is obtained by using both the Emerging Patterns algorithm and the EM algorithm, for the analysis of microarray data. For the model selection, it employs a novel agglomerative step together with MDL criterion. And, we present the result of comparative experiments between AIC, MDL and minimum message length (MML) used to determine a criterion for our algorithm. The robustness of using emerging patterns based on mixture models, as well as using the Gaussian mixture model for subspace clustering, was demonstrated on both synthetic and real data sets. In experiments, it also certified that a new agglomerative method that merges mostly correlated components with MDL consistently worked better than the one that removes weak weight components.
9243283
Self-occlusion immune video tracking of objects in cluttered environments
We propose a new approach that uses a motion-estimation based framework for video tracking of objects in the presence of self-occlusion in cluttered environments. What makes our work different from others is that, instead of carrying out the motion estimation between two adjacent frames, we tackle the self-occlusion problem from the view of multiple frames. The heart of our approach lies in extracting features appearing in different time frames, genesis frames, and setting up a motion estimation scheme through multiple applications of Kalman filtering based on the different genesis indices. To make the tracked object look visually familiar to the human observer, the system also makes its best attempt at extracting the boundary contour of the object - a difficult problem in its own right, since self-occlusion created by any rotational motion of the tracked object would cause large sections of the boundary contour in the previous frame to disappear in the current frame. Our approach has been tested on a wide variety of video sequences, some of which are presented.
7510303
An adaptive protocol for efficient support of range queries in DHT-based systems
In recent years, distributed hash tables (DHTs) have been proposed as a fundamental building block for large scale distributed applications. Important functionalities such as searching have been added to the DHTs basic lookup capability. However, supporting range queries efficiently remains a difficult problem. We describe an adaptive mechanism that relies on a logical tree data structure, the range search tree (RST), to support range queries efficiently. Nodes in the RST automatically group registrations based on their values. Queries are decomposed into a small number of sub-queries for efficient resolution. The system dynamically optimizes itself to minimize the registration and query cost based on observed load. The system is fully distributed and avoids bottleneck problems encountered in traditional tree-based systems. Extensive simulation results validate the effectiveness of the system.
11148752
Steganalysis Using High-Dimensional Features Derived from Co-occurrence Matrix and Class-Wise Non-Principal Components Analysis (CNPCA)
This paper presents a novel steganalysis scheme with high-dimensional feature vectors derived from co-occurrence matrix in either spatial domain or JPEG coefficient domain, which is sensitive to data embedding process. The class-wise non-principal components analysis (CNPCA) is proposed to solve the problem of the classification in the high-dimensional feature vector space. The experimental results have demonstrated that the proposed scheme outperforms the existing steganalysis techniques in attacking the commonly used steganographic schemes applied to spatial domain (Spread-Spectrum, LSB, QIM) or JPEG domain (OutGuess, F5, Model-Based).
2327805
Detecting Wormhole Attacks in Wireless Networks Using Connectivity Information
We propose a novel algorithm for detecting worm-hole attacks in wireless multi-hop networks. The algorithm uses only connectivity information to look for forbidden substructures in the connectivity graph. The proposed approach is completely localized and, unlike many techniques proposed in literature, does not use any special hardware artifact or location information, making the technique universally applicable. The algorithm is independent of wireless communication models. However, knowledge of the model and node distribution helps estimate a parameter used in the algorithm. We present simulation results for three different communication models and two different node distributions, and show that the algorithm is able to detect wormhole attacks with a 100% detection and 0% false alarm probabilities whenever the network is connected with high probability. Even for very low density networks where chances of disconnection is very high, the detection probability remains very high.
8377397
Boundary recognition in sensor networks by topological methods
Wireless sensor networks are tightly associated with the underlying environment in which the sensors are deployed. The global topology of the network is of great importance to both sensor network applications and the implementation of networking functionalities. In this paper we study the problem of topology discovery, in particular, identifying boundaries in a sensor network. Suppose a large number of sensor nodes are scattered in a geometric region, with nearby nodes communicating with each other directly. Our goal is to find the boundary nodes by using only connectivity information. We do not assume any knowledge of the node locations or inter-distances, nor do we enforce that the communication graph follows the unit disk graph model. We propose a simple, distributed algorithm that correctly detects nodes on the boundaries and connects them into meaningful boundary cycles. We obtain as a byproduct the medial axis of the sensor field, which has applications in creating virtual coordinates for routing. We show by extensive simulation that the algorithm gives good results even for networks with low density. We also prove rigorously the correctness of the algorithm for continuous geometric domains.
13640860
Parallel Multiresolution Volume Rendering of Large Data Sets with Error-Guided Load Balancing
We present a new parallel multiresolution volume rendering algorithm for visualizing large data sets. Using the wavelet transform, the raw data is first converted into a multiresolution wavelet tree. To eliminate the parent-child data dependency for reconstruction and achieve load-balanced rendering, we design a novel algorithm to partition the tree and distribute the data along a hierarchical space-filling curve with error-guided bucketization. At run time, the wavelet tree is traversed according to the user-specified error tolerance, data blocks of different resolutions are decompressed and rendered to compose the final image in parallel. Experimental results showed that our algorithm can reduce the run-time communication cost to a minimum and ensure a well-balanced workload among processors when visualizing gigabytes of data with arbitrary error tolerances.