40714150
A semantic mediation approach for problems in computational molecular biology
As great amount of data are being produced and accumulated in life sciences, information access and consequent integration in analytical and computational methods become critical issues in order to conduct research. In this work we describe how the synergic combination of a high-level programmable planner engine and formal semantics are suitable to resolve many information integration problems in molecular biology.
9743987
Complex Visual Activity Recognition Using a Temporally Ordered Database
We propose using a temporally ordered database for complex visual activity recognition. We use a temporal precedence relation together with the assumption of fixed bounded temporal uncertainty of occurrence time of an atomic activity and comparatively large temporal extent of the complex activity. Under these conditions we identify the temporal structure of complex activities as a semiorder and design a database that has semiorder as its data model. A query algebra is then defined for this data model.
14666453
An Interpolated Volume Data Model
Publisher Summary This chapter explores the basic functionality of the volume data model. It considers examples from biology and volumes of measurement from quantum physics. The data model is similar in the two cases, but the operations that are commonly used are quite different. In the second case, for instance, one is often interested in conditions on the behavior of local differential operators, such as zero-flow surfaces, while in the biological case one has a mix of value conditions and geometric condition. With these two application fields, this chapter highlights the generality and flexibility of the model. The system is based on a commercial database, augmented with specialized functions to manipulate the volume data model. The chapter demonstrates various operations specifying queries both using a graphical user interface and entering them directly in structured query language (SQL) augmented with the volume algebra operations.
28954888
Modeling shape and topology of 3D images of biological specimens
This paper presents an efficient way of representing the geometry and topology of 3D images of biological specimens derived from electron microscopy. A vector quantization algorithm is used in order to select a reduced set of interior points that best approximates the probability density function of the original volumetric data. Object's geometry and topology are obtained from the point set by the use of the alpha shapes theory.
8323337
Modeling Functional Data Sources as Relations
In this paper we present a model of functional access to data that, we argue, is suitable for modeling a class of data repositories characterized by functional access, such as web sites. We discuss the problem of modeling such data sources as a set of relations, of determining whether a given query expressed on these relations can be translated into a combination of functions defined by the data sources, and of finding an optimal plan to do so.
2635468
A System for Managing Alternate Models in Model-Based Mediation
In [1,3], we have described the problem of model-based mediation (MBM) as an extension of the global-as-view paradigm of information integration. The need for this extension arises in many application domains where the information sources to be integrated not only differ in their export formats, data models, and query capabilities, but have widely different schema with very little overlap in attributes. In scientific applications, the information sources come from different subdisciplines, and despite their poorly overlapping schema, can be integrated because they capture different aspects of the same scientific objects or phenomena, and can be conceptually integrated due to scientific reasons. In the MBM paradigm, a “mediation engineer” consults with domain experts to explicitly model the “glue knowledge” using a set of facts and rules at the mediator. Integrated views are defined in MBM on top of the exported schemas from the information sources together with the glue knowledge source that ties them together. We have successfully applied the MBM technique to develop the KIND mediator or Neuroscience information sources [1]-[4]. To accomplish this, sources in the MBM framework export their conceptual models (CMs), consisting of the logical schema, domain constraints, and object contexts, i.e., formulas that relate their conceptual schema with the global domain knowledge maintained at the mediator. Thus model-based mediation has a hybrid approach to information integration - on the one hand at the mediator integrated views are defined over source CMs and the Knowledge Map using a global-as-view approach; on the other hand, object-contexts of the source are defined as local-as-view.
5331854
On the Scalable Computation of Large Sets of Integrals
We consider efficient strategies for the parallel and distributed computation of large sets of multivariate integrals. These arise in many applications such as computational chemistry, high energy physics and finite element problems. We use a hierarchical architecture which is highly scalable and allows parallelization not only at the domain level but also at the integral level. We present experimental results on a family of parametrized integrals and show that our approach leads to an efficient scalable load balanced algorithm. The methods are easily applicable to other areas where a large number of problems need to be solved efficiently on a parallel and distributed system.
9848793
Stochastic Steiner Trees Without a Root
This paper considers the Steiner tree problem in the model of two-stage stochastic optimization with recourse. This model, the focus of much recent research [11, 16, 8, 18], tries to capture the fact that many infrastructure planning problems have to be solved in the presence of uncertainty, and that we have make decisions knowing merely market forecasts (and not the precise set of demands); by the time the actual demands arrive, the costs may be higher due to inflation. 
 
In the context of the Stochastic Steiner Tree problem on a graph G = (V,E), the model can be paraphrased thus: on Monday, we are given a probability distribution π on subsets of vertices, and can build some subset EM of edges. On Tuesday, a set of terminals D materializes (drawn from the same distribution π). We now have to buy edges ET so that the set EM ∪ ET forms a Steiner tree on D. The goal is to minimize the expected cost of the solution. 
 
We give the first constant-factor approximation algorithm for this problem. To the best of our knowledge, this is the first O(1)-approximation for the stochastic version of a non sub-additive problem. In fact, algorithms for the unrooted stochastic Steiner tree problem we consider are powerful enough to solve the Multicommodity Rent-or-Buy problem, itself a topic of recent interest [3, 7, 15].
6212306
Constraint checking with partial information
Constraints are a valuable tool for managing information across multiple databases, as well as for general purposes of assuring data integrity. However, efficient implementation of constraint checking is difficult. In this paper we explore techniques for assuring constraint satisfaction without performing a complete evaluation of the constraints. We consider methods that use only constraint definitions, methods that use constraints and updates, and methods that use constraints, updates, and “local” data.
16442037
Handwritten Bank Check Recognition Of Courtesy Amounts
In spite of rapid evolution of electronic techniques, a number of large-scale applications continue to rely on the use of paper as the dominant medium. This is especially true for processing of bank checks. This paper examines the issue of reading the numerical amount field. In the case of checks, the segmentation of unconstrained strings into individual digits is a challenging task because of connected and overlapping digits, broken digits, and digits that are physically connected to pieces of strokes from neighboring digits. The proposed architecture involves four stages: segmentation of the string into individual digits, normalization, recognition of each character using a neural network classifier, and syntactic verification. Overall, this paper highlights the importance of employing a hybrid architecture that incorporates multiple approaches to provide high recognition rates.
2367227
Parallel Algorithms For Vehicle Routing Problems
Vehicle routing problems involve the navigation of one or more vehicles through a network of locations. Locations have associated handling times as well as time windows during which they are active. The arcs connecting locations have time costs associated with them. In this paper, we consider two different problems in single vehicle routing. The first is to find least time cost routes between all pairs of nodes in a network for navigating vehicles; we call this the all pairs routing problem. We show that there is an O(log3 n) time parallel algorithm using a polynomial number of processors for this problem on a CREW PRAM. We next consider the problem in which a vehicle services all locations in a network. Here, locations can be passed through at any time but only serviced during their time window. The general problem is -complete under even fairly stringent restrictions but polynomial algorithms have been developed for some special cases. In particular, when the network is a line, there is no time cost in servicing a location, and all time windows are unbounded at either their lower or upper end, O(n2) algorithms have been developed. We show that under the same conditions, we can reduce this problem to the all pairs routing problem and therefore obtain an O(log3 n) time parallel algorithm on a CREW PRAM.