879315
Kolmogorov Random Graphs and the Incompressibility Method
We investigate topological, combinatorial, statistical, and enumeration properties of finite graphs with high Kolmogorov complexity (almost all graphs) using the novel incompressibility method. Example results are (i) the mean and variance of the number of (possibly overlapping) ordered labeled subgraphs of a labeled graph as a function of its randomness deficiency (how far it falls short of the maximum possible Kolmogorov complexity) and (ii) a new elementary proof for the number of unlabeled graphs.
9397376
Inferring a DNA Sequence from Erroneous Copies
Abstract We suggest a novel approach for efficiently reconstructing an original DNA sequence from erroneous copies.
553776
Linear approximation of shortest superstrings
We consider the following problem: given a collection of strings s1, ••• ,sm, find the shortest string s such that each s; appears as a substring (a consecutive block) of s. Although this problem is known to be NP-hard, a simple greedy procedure appears to do quite well and is routinely used in DNA sequencing and data compression practice, namely: repeatedly merge the pair of (distinct) strings with maximum overlap until only one string remains. Let n denote the A. Blum was supported by a National Science Foundation (NSF) Graduate Fellowship. Part of this work was done while A. Blum was visiting AT & T Bell Labs. T. Jiang was supported in part by a grant from SERB, McMaster University and NSERC Operating Grant OGP0046613. M. Li was supported in part by the NSERC Operating Grants OGP0036747 and OGP0046506. J. Tromp was supported in part by NSERC Grant OGP0036747 while the author was visiting at the University of Waterloo. Authors' present addresses: A. Blum, School of Computer Science, Carnegie-Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213. E-mail: avrim@theory.cs.cmu.edu; T. Jiang, Department of Computer Science, McMaster University, Hamilton, Ont., Canada L8S 4Kl. E-mail: jiang<Q•maccs. mcmaster.ca; M. Li, Department of Computer Science, University of Waterloo, Waterloo, Ont., Canada N3L 30 I. E-mail: mli@watmath.waterloo.edu; J. Tromp, CWI, P.O. Box 4079, 1009 AB Amsterdam, The Netherlands. E-mail: tromp@cwi.nl; M. Yannakakis, Room 2C-319, AT&T Bell Labs, 600 Mountain Avenue, Murray Hill, NJ 07974. E-mail: mihalis@research.att.com. Permission to copy without fee all or part of this material is granted provided that the copies arc not made or distributed for direct commercial advantage, the ACM copyright notice and the title of the publication and its date appear, and notice is given that copying is by permission of the Association for Computing Machinery. To copy otherwise, or to republish, requires a fee and/or specific permission. © 1994 ACM 0004-5411/94/0700-0630$03.50 Journal of the Association for Computing Machinery, Vol. 41, No. 4, July 1994, pages 630-647. Linear Approximation of Shortest Superstrings 631 length of the optimal superstring. A common conjecture states that the above greedy procedure produces a superstring of length O(n) (in fact, 2n), yet the only previous nontrivial bound known for any polynomial-time algorithm is a recent O(n log n) result. We show that the greedy algorithm does in fact achieve a constant factor approximation, proving an upper bound of 4n. Furthermore, we present a simple modified version of the greedy algorithm that we show produces a superstring of length at most 3n. We also show the superstring problem to be MAX SNP-hard, which implies that a polynomial-time approximation scheme for this problem is unlikely.
14168735
Inductive Reasoning and Kolmogorov Complexity
Abstract Reasoning to obtain the “truth” about reality, from external data, is an important, controversial, and complicated issue in man's effort to understand nature. (Yet, today, we try to make machines do this.) There have been old useful principles, new exciting models, and intricate theories scattered in vastly different areas including philosophy of science, statistics, computer science, and psychology. We focus on inductive reasoning in correspondence with ideas of R. J. Solomonoff. While his proposals result in perfect procedures, they involve the noncomputable notion of Kolmogorov complexity. In this paper we develop the thesis that Solomonoff's method is fundamental in the sense that many other induction principles can be viewed as particular ways to obtain computable approximations to it. We demonstrate this explicitly in the cases of Gold's paradigm for inductive inference, Rissanen's minimum description length (MDL) principle, Fisher's maximum likelihood principle, and Jaynes' maximum entropy principle. We present several new theorems and derivations to this effect. We also delimit what can be learned and what cannot be learned in terms of Kolmogorov complexity, and we describe an experiment in machine learning of handwritten characters. We also give an application of Kolmogorov complexity in Valiant style learning, where we want to learn a concept probably approximately correct in feasible time and examples.
871253
Kolmogorov Complexity Arguments in Combinatorics
Abstract The utility of a Kolmogorov complexity method in combinatorial theory is demonstrated by several examples.
43310555
Twist-Rotation Transformations of Binary Trees and Arithmetic Expressions
The paper studies the computational complexity and efficient algorithms for the twist?rotation transformations of binary trees, which is equivalent to the transformation of arithmetic expressions over an associative and commutative binary operation. The main results are (1) a full binary tree with n labeled leaves can be transformed into any other in at most 3nlogn+2n twist and rotation operations, (2) deciding the twist?rotation distance between two binary trees is NP-complete, and (3) the twist?rotation transformation can be approximated with ratio 6logn+4 in polynomial time for full binary trees with n uniquely labeled leaves.
30829488
Vertex pancyclism in claw-free graphs
Abstract In this paper, we show four sufficient conditions for vertex pancyclicity in claw-free graphs. These results improve, respectively, results of Broersma and Veldman, Gould and Jacobson, and Ryjacek. In particular, we prove that if G is a 3-connected claw-free graph such that the vertices of degree 1 of every induced bull have a common neighbor in G then every vertex of G is contained in a cycle of all possible lengths except for four and five. We conjecture that almost all pancyclic claw-free graphs with minimum degree at least three are vertex pancyclic.
15017510
Min-Energy Voltage Allocation for Tree-Structured Tasks
We study job scheduling on processors capable of running at variable voltage/speed to minimize energy consumption. Each job in a problem instance is specified by its arrival time and deadline, together with required number of CPU cycles. It is known that the minimum energy schedule for n jobs can be computed in O(n3) time, assuming a convex energy function. We investigate more efficient algorithms for computing the optimal schedule when the job sets have certain special structures. When the time intervals are structured as trees, the minimum energy schedule is shown to have a succinct characterization and is computable in time O(P) where P is the tree’s total path length. We also study an on-line average-rate heuristics AVR and prove that its energy consumption achieves a small constant competitive ratio for nested job sets and for job sets with limited overlap. Some simulation results are also given.
406684
Tri-training: exploiting unlabeled data using three classifiers
In many practical data mining applications, such as Web page classification, unlabeled training examples are readily available, but labeled ones are fairly expensive to obtain. Therefore, semi-supervised learning algorithms such as co-training have attracted much attention. In this paper, a new co-training style semi-supervised learning algorithm, named tri-training, is proposed. This algorithm generates three classifiers from the original labeled example set. These classifiers are then refined using unlabeled examples in the tri-training process. In detail, in each round of tri-training, an unlabeled example is labeled for a classifier if the other two classifiers agree on the labeling, under certain conditions. Since tri-training neither requires the instance space to be described with sufficient and redundant views nor does it put any constraints on the supervised learning algorithm, its applicability is broader than that of previous co-training style algorithms. Experiments on UCI data sets and application to the Web page classification task indicate that tri-training can effectively exploit unlabeled data to enhance the learning performance.
12850359
Recognition of operator motions for real-time assistance using virtual fixtures
Hidden Markov Models (HMMs) are used for automatic segmentation and recognition of user motions. A new algorithm for real-time HMM recognition was developed. The segmentation results are used to provide appropriate assistance in a combined curve following and object avoidance task. This assistance takes the form of a virtual fixture, whose compliance can be altered online. Recognition and assistance experiments were performed using force and position data recorded from a cooperative manipulation system, where a robot and a human operator hold an instrument simultaneously. Recognition accuracy exceeds 90%, even when the users training the HMMs differ from those executing the task. For a task consisting of both path following and avoidance motions, an HMM-based virtual fixture switches the compliance from low to high when the user is trying to move away from the path. The HMM method improves operator performance in comparison with a constant virtual fixture and no virtual fixture.
12676409
Measurements of the congestion responsiveness of windows streaming media
While previous research has shown that streaming media can respond to network congestion, it is not known to what extent commercial products are responsive. This research characterizes the bitrate response of Windows Streaming Media (WSM) to changes in network capacity and loss rate. A streaming media test bed was built to systematically vary network and content encoding characteristics and measure WSM congestion responsiveness. The results demonstrate that WSM improve response to congestion when content is encoded into several bitrates by the content provider.