3063945
Statistical-based approach to word segmentation
This paper presents a text word extraction algorithm that takes a set of bounding boxes of glyphs and their associated text lines of a given document and partitions the glyphs into a set of text words, using only the geometric information of the input glyphs. The algorithm is probability based. An iterative, relaxation-like method is used to find the partitioning solution that maximizes the joint probability. To evaluate the performance of our test word extraction algorithm, we used a 3-fold validation method and developed a quantitative performance measure. The algorithm was evaluated on the UW-III database of some 1600 scanned document image pages. An area-overlap measure was used to find the correspondence between the detected entities and the ground-truth. For a total of 827, 433 ground truth words, the algorithm identified and segmented 800, 149 words correctly, an accuracy of 97.43%.
3331857
Table Detection via Probability Optimization
In this paper, we define the table detection problem as a probability optimization problem. We begin, as we do in our previous algorithm, finding and validating each detected table candidates. We proceed to compute a set of probability measurements for each of the table entities. The computation of the probability measurements takes into consideration tables, table text separators and table neighboring text blocks. Then, an iterative updating method is used to optimize the page segmentation probability to obtain the final result. This new algorithm shows a great improvement over our previous algorithm. The training and testing data set for the algorithm include 1, 125 document pages having 518 table entities and a total of 10, 934 cell entities. Compared with our previous work, it raised the accuracy rate to 95.67% from 90.32% and to 97.05% from 92.04%.
5121588
Brain Surface Parameterization Using Riemann Surface Structure
We develop a general approach that uses holomorphic 1-forms to parameterize anatomical surfaces with complex (possibly branching) topology. Rather than evolve the surface geometry to a plane or sphere, we instead use the fact that all orientable surfaces are Riemann surfaces and admit conformal structures, which induce special curvilinear coordinate systems on the surfaces. Based on Riemann surface structure, we can then canonically partition the surface into patches. Each of these patches can be conformally mapped to a parallelogram. The resulting surface subdivision and the parameterizations of the components are intrinsic and stable. To illustrate the technique, we computed conformal structures for several types of anatomical surfaces in MRI scans of the brain, including the cortex, hippocampus, and lateral ventricles. We found that the resulting parameterizations were consistent across subjects, even for branching structures such as the ventricles, which are otherwise difficult to parameterize. Compared with other variational approaches based on surface inflation, our technique works on surfaces with arbitrary complexity while guaranteeing minimal distortion in the parameterization. It also offers a way to explicitly match landmark curves in anatomical surfaces such as the cortex, providing a surface-based framework to compare anatomy statistically and to generate grids on surfaces for PDE-based signal processing.
6693323
Automated Surface Matching Using Mutual Information Applied to Riemann Surface Structures
Many medical imaging applications require the computation of dense correspondence vector fields that match one surface with another. To avoid the need for a large set of manually-defined landmarks to constrain these surface correspondences, we developed an algorithm to automate the matching of surface features. It extends the mutual information method to automatically match general 3D surfaces (including surfaces with a branching topology). First, we use holomorphic 1-forms to induce consistent conformal grids on both surfaces. High genus surfaces are mapped to a set of rectangles in the Euclidean plane, and closed genus-zero surfaces are mapped to the sphere. Mutual information is used as a cost functional to drive a fluid flow in the parameter domain that optimally aligns stable geometric features (mean curvature and the conformal factor) in the 2D parameter domains. A diffeomorphic surface-to-surface mapping is then recovered that matches anatomy in 3D. We also present a spectral method that ensures that the grids induced on the target surface remain conformal when pulled through the correspondence field. Using the chain rule, we express the gradient of the mutual information between surfaces in the conformal basis of the source surface. This finite-dimensional linear space generates all conformal reparameterizations of the surface. We apply the method to hippocampal surface registration, a key step in subcortical shape analysis in Alzheimer's disease and schizophrenia.
5267319
Volumetric harmonic brain mapping
We developed two different techniques to study volume mapping problem in Computer Graphics. The first one is to find a harmonic map from a 3 manifold to a 3D solid sphere and the second is a sphere carving algorithm which calculates the simplicial decomposition of volume adapted to surfaces. In this paper, we apply these two techniques to brain mapping problem. We use a tetrahedral mesh to represent the brain volume. The experimental results on both synthetic and brain volume data are reported. We suggest that 3D harmonic mapping of brain volumes to a solid sphere can provide a canonical coordinate system for feature identification and segmentation, as well as anatomical normalization.
3357707
A method for document zone content classification
This paper describes an algorithm to classify each given document zone into one of nine classes and provides a protocol for its performance evaluation. The classification scheme uses an optimized binary decision tree and Viterbi algorithm for HMM to find the optimal solution. Our algorithm was trained and tested on a total of 24,177 zones within the 1600 images from UWCDROM III database. Its accuracy rate is 98.45% with a mean false alarm rate of 0.50%.
10131509
Using Approximation Hardness to Achieve Dependable Computation
Redundancy has been utilized to achieve fault tolerant computation and to achieve reliable communication in networks of processors. These techniques can only be extended to computations solely based on functions in one input in which redundant hardware or software (servers) are used to compute intermediate and end results. However, almost all practical computation systems consist of components which are based on computations with multiple inputs. Wang, Desmedt, and Burmester have used AND/OR graphs to model this scenario. Roughly speaking, an AND/OR graph is a directed graph with two types of vertices, labeled ∧-vertices and ∨-vertices. In this case, processors which need all their inputs in order to operate could be represented by ∧-vertices, whereas processors which can choose one of their "redundant" inputs could be represented by ∨-vertices. In this paper, using the results for hardness of approximation and optimization problems, we will design dependable computation systems which could defeat as many malicious faults as possible. Specifically, assuming certain approximation hardness result, we will construct k-connected AND/OR graphs which could defeat a ck-active adversary (therefore a ck-passive adversary also) where c > 1 is any given constant. This result improves a great deal on the results for the equivalent communication problems.
16424311
Model-based fault detection in powerline networking
Powerline networking is increasingly becoming an important component of home networking systems. Its reliability is however still a problem. We consider the popular X10 powerline communication protocol. Our main contribution is a model-based fault detection system that achieves completeness of coverage for X10 faults. We develop experimentally a finite state automaton that models all legal sequences of X10 commands. The task of detecting every violation of this model is complicated by the presence of hidden state and unobservable illegal transitions. This problem is addressed by deducing the model state indirectly from the sequence of X10 commands that is observed on the powerline. To this end, we formulate the model state deduction task in terms of the observability of the model, a concept which arises in discrete-event dynamic systems. Based on the observability property of our X10 model, the detection of model violations is performed in our current implementation via regular expressions on observable X10 command sequences. Our final contribution is a preliminary diagnosis procedure for identifying X10 faults.
22146424
RETR: Reverse Engineering to Requirements
Reverse engineering aims at extracting many kinds of information from existing software and using this information for system renovation and program understanding. The goal of this full day WCRE'05 workshop is to identify methods and techniques for Reverse Engineering from software to Requirements (RETR).
2472095
Coarse and Reliable Geometric Alignment for Protein Docking
We present an efficient algorithm for generating a small set of coarse alignments between interacting proteins using meaningful features on their surfaces. The proteins are treated as rigid bodies, but the results are more generally useful as the produced configurations can serve as input to local improvement algorithms that allow for protein flexibility. We apply our algorithm to a diverse set of protein complexes from the Protein Data Bank, demonstrating the effectivity of our algorithm, both for bound and for unbound protein docking problems.
14524485
Boundary finding with correspondence using statistical shape models
We propose an approach for boundary finding where the correspondence of a subset of boundary points to a model is simultaneously determined. Global shape parameters derived from the statistical variation of object boundary points in a training set are used to model the object. A Bayesian formulation, based on this prior knowledge and the edge information of the input image, is employed to find the object boundary with its subset points in correspondence with boundaries in the training set or the mean boundary. We compared the use of a generic smoothness prior and a uniform independent prior with the training set prior in order to demonstrate the power of this statistical information. A number of experiments were performed on both synthetic and real medical images of the brain and heart to evaluate the approach, including the validation of the dependence of the method on image quality, different initialization and prior information.