117657252
Labeled Search Trees and Amortized Analysis: Improved Upper Bounds for NP-Hard Problems
A sequence of exact algorithms to solve the Vertex Cover and Maximum Independent Set problems have been proposed recently in the literature. All these algorithms appeal to a very conservative analysis that considers the size of the search tree, under a worst-case scenario, to derive an upper bound on the running time of the algorithm. In this paper we propose a different approach to analyze the size of the search tree. We use amortized analysis to show how simple algorithms, if analyzed properly, may perform much better than the upper bounds on their running time derived by considering only a worst-case scenario. This approach allows us to present a simple algorithm of running time O(1.194 k + n) for the parameterized Vertex Cover problem on degree-3 graphs, and a simple algorithm of running time O(1.1254 n ) for the Maximum Independent Set problem on degree-3 graphs. Both algorithms improve the previous best algorithms for the problems.
5242879
Interactive rind modeling
In this paper, we describe a technique, with roots in topological graph theory, that we call rind modeling. It provides for the easy creation of surfaces resembling peeled and punctured rinds. We show how the method's two main steps of: 1) creation of a shell or crust like the rind of an orange, and 2) opening holes in the crust by punching or peeling can be encapsulated into a real time semi-automatic interactive algorithm. We include a number of worked examples, some by students in a first modeling course, that demonstrate the ease with which a large variety of intricate rind shapes can be created.
16331940
Optimal Parallel Routing in Star Networks
Star networks have recently been proposed as attractive alternatives to the popular hypercube for interconnecting processors on a parallel computer. In this paper, we present an efficient algorithm that constructs an optimal parallel routing in star networks. Our result improves previous results for the problem.
1021255
A minimal and complete set of operators for the development of robust manifold mesh modelers
In this paper, we identify a minimal and complete set of fundamental operators, which is necessary and sufficient for performing all homeomorphic and topological operations on 2- manifold mesh structures. Efficient algorithms are developed for the implementation of these operators. We also developed a set of powerful, user-friendly, and effective operators at the level of user-interface. Using these operators, we have developed a prototype system for robust, interactive, and user-friendly modeling of orientable 2-manifold meshes. Users of our system can perform a large set of homeomorphic and topological changes with these user-interface level operators. Our system is topologically robust in the sense that users will never create invalid 2-manifold mesh structure with these operators. In our system, the homeomorphic and topological surgery operations can be applied alternatively on 2-manifold meshes. With our system, users can blend surfaces, construct rinds, and open holes on these rind shapes. With our system, the shapes that look like solid, non-manifold, or 2-manifold with boundary can be manipulated. The system also provides automatic texture mapping during topology changes.
31382426
Strong Fault-Tolerance: Parallel Routing in Networks with Faults
A d-regular network G is strongly fault-tolerant if for any copy Gf of G with at most d - 2 faulty nodes, every pair of nonfaulty nodes u and v in Gf admits min{df(u), df (v)} node-disjoint paths in Gf from u to v, where df(u) and df(v) are the degrees of the nodes u and v in Gf. We show that popular network structures, such as hypercube and star networks, are strongly fault-tolerant. We develop efficient algorithms that construct the maximum number of node-disjoint paths of optimal or nearly optimal length in these networks with faulty nodes. Our algorithms are optimal in terms of their running time.
2261180
Graph Ear Decompositions and Graph Embeddings
Ear decomposition of a graph has been extensively studied in relation to graph connectivity. In this paper, a connection of ear decomposition to graph embeddings is exhibited. It is shown that constructing a maximum-paired ear decomposition of a graph and constructing a maximum-genus embedding of the graph are polynomial-time equivalent. Applications of this connection are discussed.
34159049
Approximation algorithms for scheduling real-time jobs with multiple feasible intervals
Time-critical jobs in many real-time applications have multiple feasible intervals. Such a job is constrained to execute from start to completion in one of its feasible intervals. A job fails if the job remains incomplete at the end of the last feasible interval. Earlier works developed an optimal off-line algorithm to schedule all the jobs in a given job set and on-line heuristics to schedule the jobs in a best effort manner. This paper is concerned with how to find a schedule in which the number of jobs completed in one of their feasible intervals is maximized. We show that the maximization problem is $${\cal N}{\cal P}$$-hard for both non-preemptible and preemptible jobs. This paper develops two approximation algorithms for non-preemptible and preemptible jobs. When jobs are non-preemptible, Algorithm Least Earliest Completion Time First (LECF) is shown to have a 2-approximation factor; when jobs are preemptible, Algorithm Least Execution Time First (LEF) is proved being a 3-approximation algorithm. We show that our analysis for the two algorithms are tight. We also evaluate our algorithms by extensive simulations. Simulation results show that Algorithms LECF and LEF not only guarantee the approximation factors but also outperform other multiple feasible interval scheduling algorithms in average.
17449226
Approximation algorithms for scheduling multiple feasible interval jobs
Time-critical jobs in many real-time applications have multiple feasible intervals. Such a job is constrained to execute from start to completion in one of its feasible intervals. A job fails if the job remains incomplete at the end of the last feasible interval. This paper is concerned with how to find a schedule in which the number of jobs completed in one of their feasible intervals is maximized. We show that the maximization problem is NP-hard for both nonpreemptible and preemptible jobs. This paper develops two approximation algorithms for nonpreemptible and preemptible jobs. When jobs are nonpreemptible, algorithm LECF is with a 2-approximation factor; when jobs are preemptible, algorithm LEF is proved being a 3-approximation algorithm. We also show that our analysis on the two algorithms is tight by providing a set of input instances. Simulation results demonstrate that algorithms LECF and LEF not only guarantee the approximation factors but also outperform other multiple feasible interval scheduling algorithms.
6192242
Computing Maximum-Scoring Segments in Almost Linear Time
Given a sequence, the problem studied in this paper is to find a set of k disjoint continuous subsequences such that the total sum of all elements in the set is maximized. This problem arises naturally in the analysis of DNA sequences. The previous best known algorithm requires Θ(n log n) time in the worst case. For a given sequence of length n, we present an almost linear-time algorithm for this problem. Our algorithm uses a disjoint-set data structure and requires O(nα(n, n)) time in the worst case, where α(n, n) is the inverse Ackermann function.
6316461
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly improves the solution time and quality by utilizing the locality structure of the problem. The algorithm solves the multiple sequence alignment in three stages. First, an automated and suboptimal partitioning strategy is used to divide the set of sequences into several subsections. Then a multiple sequence alignment algorithm based on ant colony optimization is used to align the sequences of each subsection. Finally, the alignment of original sequences can be obtained by assembling the result of each subsection. The ant colony algorithm is highly optimized in order to avoid local optimal traps and converge to global optimal efficiently. Experimental results show that the algorithm can significantly reduce the running time and improve the solution quality on large-scale multiple sequence alignment benchmarks.
27866706
A New Method of Circumscribing Beliefs: The Propositional Case
We propose here a new notion of a minimal model for forming circumscription in belief-logic by incorporating the notion of minimal models in the prepositional logic. This results in a new circumscription operation for belief-formulas than the one considered in [4-6]. An important feature of the new circumscription operation is its close relationship with the circumscription of prepositional formulas. For instance, we have CIRC[Bp] = B(CIRC[p]), where p is a prepositional formula. We give several examples to show that the new notion of circumscription fits quite well with intuition.