14428056
Approximation algorithms for directed Steiner problems
We obtain the first non-trivial approximation algorithms for the Steiner Tree problem and the Generalized Steiner Tree problem in general directed graphs. Essentially no approximation algorithms were known for these problems. For the Directed Steiner Tree problem, we design a family of algorithms which achieve an approximation ratio of O(k^\epsilon) in time O(kn^{1/\epsilon}) for any fixed (\epsilon < 0), where k is the number of terminals to be connected. For the Directed Generalized Steiner Tree Problem, we give an algorithm which achieves an approximation ratio of O(k^{2/3}\log^{1/3} k), where k is the number of pairs to be connected. Related problems including the Group Steiner tree problem, the Node Weighted Steiner tree problem and several others can be reduced in an approximation preserving fashion to the problems we solve, giving the first non-trivial approximations to those as well.
9397376
Inferring a DNA Sequence from Erroneous Copies
Abstract We suggest a novel approach for efficiently reconstructing an original DNA sequence from erroneous copies.
14168735
Inductive Reasoning and Kolmogorov Complexity
Abstract Reasoning to obtain the “truth” about reality, from external data, is an important, controversial, and complicated issue in man's effort to understand nature. (Yet, today, we try to make machines do this.) There have been old useful principles, new exciting models, and intricate theories scattered in vastly different areas including philosophy of science, statistics, computer science, and psychology. We focus on inductive reasoning in correspondence with ideas of R. J. Solomonoff. While his proposals result in perfect procedures, they involve the noncomputable notion of Kolmogorov complexity. In this paper we develop the thesis that Solomonoff's method is fundamental in the sense that many other induction principles can be viewed as particular ways to obtain computable approximations to it. We demonstrate this explicitly in the cases of Gold's paradigm for inductive inference, Rissanen's minimum description length (MDL) principle, Fisher's maximum likelihood principle, and Jaynes' maximum entropy principle. We present several new theorems and derivations to this effect. We also delimit what can be learned and what cannot be learned in terms of Kolmogorov complexity, and we describe an experiment in machine learning of handwritten characters. We also give an application of Kolmogorov complexity in Valiant style learning, where we want to learn a concept probably approximately correct in feasible time and examples.
43310555
Twist-Rotation Transformations of Binary Trees and Arithmetic Expressions
The paper studies the computational complexity and efficient algorithms for the twist?rotation transformations of binary trees, which is equivalent to the transformation of arithmetic expressions over an associative and commutative binary operation. The main results are (1) a full binary tree with n labeled leaves can be transformed into any other in at most 3nlogn+2n twist and rotation operations, (2) deciding the twist?rotation distance between two binary trees is NP-complete, and (3) the twist?rotation transformation can be approximated with ratio 6logn+4 in polynomial time for full binary trees with n uniquely labeled leaves.
871253
Kolmogorov Complexity Arguments in Combinatorics
Abstract The utility of a Kolmogorov complexity method in combinatorial theory is demonstrated by several examples.
553776
Linear approximation of shortest superstrings
We consider the following problem: given a collection of strings s1, ••• ,sm, find the shortest string s such that each s; appears as a substring (a consecutive block) of s. Although this problem is known to be NP-hard, a simple greedy procedure appears to do quite well and is routinely used in DNA sequencing and data compression practice, namely: repeatedly merge the pair of (distinct) strings with maximum overlap until only one string remains. Let n denote the A. Blum was supported by a National Science Foundation (NSF) Graduate Fellowship. Part of this work was done while A. Blum was visiting AT & T Bell Labs. T. Jiang was supported in part by a grant from SERB, McMaster University and NSERC Operating Grant OGP0046613. M. Li was supported in part by the NSERC Operating Grants OGP0036747 and OGP0046506. J. Tromp was supported in part by NSERC Grant OGP0036747 while the author was visiting at the University of Waterloo. Authors' present addresses: A. Blum, School of Computer Science, Carnegie-Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213. E-mail: avrim@theory.cs.cmu.edu; T. Jiang, Department of Computer Science, McMaster University, Hamilton, Ont., Canada L8S 4Kl. E-mail: jiang<Q•maccs. mcmaster.ca; M. Li, Department of Computer Science, University of Waterloo, Waterloo, Ont., Canada N3L 30 I. E-mail: mli@watmath.waterloo.edu; J. Tromp, CWI, P.O. Box 4079, 1009 AB Amsterdam, The Netherlands. E-mail: tromp@cwi.nl; M. Yannakakis, Room 2C-319, AT&T Bell Labs, 600 Mountain Avenue, Murray Hill, NJ 07974. E-mail: mihalis@research.att.com. Permission to copy without fee all or part of this material is granted provided that the copies arc not made or distributed for direct commercial advantage, the ACM copyright notice and the title of the publication and its date appear, and notice is given that copying is by permission of the Association for Computing Machinery. To copy otherwise, or to republish, requires a fee and/or specific permission. © 1994 ACM 0004-5411/94/0700-0630$03.50 Journal of the Association for Computing Machinery, Vol. 41, No. 4, July 1994, pages 630-647. Linear Approximation of Shortest Superstrings 631 length of the optimal superstring. A common conjecture states that the above greedy procedure produces a superstring of length O(n) (in fact, 2n), yet the only previous nontrivial bound known for any polynomial-time algorithm is a recent O(n log n) result. We show that the greedy algorithm does in fact achieve a constant factor approximation, proving an upper bound of 4n. Furthermore, we present a simple modified version of the greedy algorithm that we show produces a superstring of length at most 3n. We also show the superstring problem to be MAX SNP-hard, which implies that a polynomial-time approximation scheme for this problem is unlikely.
13826196
Hourglasses and Hamilton cycles in 4-connected claw-free graphs
We show that if G is a 4-connected claw-free graph in which every induced hourglass subgraph S contains two non-adjacent vertices with a common neighbor outside S, then G is hamiltonian. This extends the fact that 4-connected claw-free, hourglass-free graphs are hamiltonian, thus proving a broader special case of a conjecture by Matthews and Sumner. 2005 Wiley Periodicals, Inc. J Graph Theory 48: 267–276, 2005
54297489
Iso-Map: Energy-Efficient Contour Mapping in Wireless Sensor Networks
Contour mapping is a crucial part of many wireless sensor network applications. Many efforts have been made to avoid collecting data from all the sensors in the network and producing maps at the sink, which is proven to be inefficient. The existing approaches (often aggregation based), however, suffer from heavy transmission traffic and incur large computational overheads on each sensor node. We propose Iso-Map, an energy-efficient protocol for contour mapping, which builds contour maps based solely on the reports collected from intelligently selected ?isoline nodes? in wireless sensor networks. Iso-Map achieves high-quality contour mapping while significantly reducing the generated traffic from O(n) to O(?n), where n is the total number of sensor nodes in the field. The pernode computation overhead is also restrained as a constant. We conduct comprehensive trace-driven simulations to verify this protocol, and demonstrate that Iso-Map outperforms the previous approaches in the sense that it produces contour maps of high fidelity with significantly reduced energy cost.
751784
An Efficient Algorithm for Computing Optimal Discrete Voltage Schedules
We consider the problem of job scheduling on a variable voltage processor with d discrete voltage/speed levels. We give an algorithm which constructs a minimum energy schedule for n jobs in O(dnlogn) time. Previous approaches solve this problem by first computing the optimal continuous solution in O(n 3 ) time and then adjusting the speed to discrete levels. In our approach, the optimal discrete solution is characterized and computed directly from the inputs. We also show that O(n log n) time is required, hence the algorithm is optimal for fixed d.
20792301
An Efficient Algorithm for Computing Optimal Discrete Voltage Schedules
We consider the problem of job scheduling on a variable voltage processor with d discrete voltage/speed levels. We give an algorithm which constructs a minimum energy schedule for n jobs in O(dnlog n) time. Previous approaches solve this problem by first computing the optimal continuous solution in O(n3) time and then adjusting the speed to discrete levels. In our approach, the optimal discrete solution is characterized and computed directly from the inputs. We also show that O(nlog n) time is required, hence the algorithm is optimal for fixed d.
10085490
Circumferences of regular claw-free graphs
A known result obtained independently by Fan and Jung is that every 3-connected k-regular graph on n vertices contains a cycle of length at least min{3k,n}. This raises the question of how much can be said about the circumferences of 3-connected k-regular claw-free graphs. In this paper, we show that every 3-connected k-regular claw-free graph on n vertices contains a cycle of length at least min{6k-17,n}.