43055665
Automatic Abstraction of Graphs Based on Node Similarity for Graph Visualization
17691685
WFMS-based Data Integration for e-Learning
As more and more organisations and institutions are moving towards the e-learning strategy, more and more disparate data are distributed by different e-learning systems. How to effectively use this vast amount of distributed data becomes a big challenge. This paper addresses this challenge and works out a new mechanism to implement data integration for e-learning. A workflow management system based (WFMS-based) data integration model is contributed to the e-learning
12511265
A Scalable Algorithm for Adjusting Node-Node Overlaps
The node-node overlaps, which occur in drawing of labeled graphs, and more importantly, in the dynamic drawing, have been a problem in graph visualization. Several approaches have recently been proposed to solve such a problem. These approaches, however, lack the scalabilities of dealing with large number of overlapping nodes. Providing a formal description of the problem, this paper presents a scalable version of our previous approach called the force-transfer algorithm. Compared to other methods, our new algorithm is able to achieve the compact adjusted layout of a large graph
5703198
On the Structural Algorithm of Filtering Graphs for Layout
When the amount of information in visualization becomes large enough, users can not perceive all elements at the same time. This problem can be solved by removing parts of the information through the process of Filtering. In this paper, we present a novel method for filtering a graph by measuring the important role property of a node. The basic idea of this approach is to quantify the importance of a node as the degree to which it has direct and indirect relationships with the other nodes in a graph. All the nodes are ranked according to their Node Importance Scores, and those less important nodes and their associated edges are then removed or invisible. In comparison with the rule_based approach, our approach is a structure_based one that makes use of the linkage of nodes rather than their semantics. It can therefore be applied to filter any kinds of connected graphs. The examples and applications provided have demonstrated that our approach can effectively reduce the visual complexities.
16444798
Finding Similar Patterns in Microarray Data
In this paper we propose a clustering algorithm called s-Cluster for analysis of gene expression data based on pattern-similarity. The algorithm captures the tight clusters exhibiting strong similar expression patterns in Microarray data,and allows a high level of overlap among discovered clusters without completely grouping all genes like other algorithms. This reflects the biological fact that not all functions are turned on in an experiment, and that many genes are co-expressed in multiple groups in response to different stimuli. The experiments have demonstrated that the proposed algorithm successfully groups the genes with strong similar expression patterns and that the found clusters are interpretable.
8009887
A Framework of Filtering, Clustering and Dynamic Layout Graphs for Visualization
Many classical graph visualization algorithms have already been developed over the past decades. However, these algorithms face difficulties in practice, such as the overlapping node problem, large graph layout and dynamic graph layout. In order to solve these problems, this paper aims to systematically address algorithmic issues related to a novel framework that describes the process of graph visualization applications. First of all, a framework for graph visualization is described. As the important parts of this framework, we then develop two effective algorithms for filtering and clustering large graphs for the layouts. As for the dynamic graph layout, a new approach to removing overlapping nodes called force-transfer algorithm is developed. The framework has been implemented in a prototype called PGA to demonstrate the performance of the proposed algorithms. Finally, a case study is provided.
3172126
Snapshot density queries on location sensors
Density queries are of practical importance in many mobility related applications. In this paper, we employ the location sensors, which are placed in a geographical area and can only detect the amount of objects moving in vicinity, to estimate the dense regions of objects. Our approach partitions the region of interest into subregions, and deploys in each subregion both location sensors and a processing node that issues and answers density queries. Three algorithms are proposed to process density queries on those processing nodes. Their accuracy and efficiency are empirically evaluated.
2832131
Applying Data Mining to Pseudo-Relevance Feedback for High Performance Text Retrieval
In this paper, we investigate the use of data mining, in particular the text classification and co-training techniques, to identify more relevant passages based on a small set of labeled passages obtained from the blind feedback of a retrieval system. The data mining results are used to expand query terms and to re-estimate some of the parameters used in a probabilistic weighting function. We evaluate the data mining based feedback method on the TREC HARD data set. The results show that data mining can be successfully applied to improve the text retrieval performance. We report our experimental findings in detail.
11235220
Probability-Based Chinese Text Processing and Retrieval
We discuss the use of probability-based natural language processing for Chinese text retrieval. We focus on comparing different text extraction methods and probabilistic weighting methods. Several docu- ment processing methods and probabilistic weighting functions are presented. A number of experiments have been conducted on large standard text collections. We present the experimental results that com- pare a word-based text processing method with a character-based method. The experimental results also compare a number of term-weighting functions including both single-unit weighting and compound-unit weighting functions. Modern information retrieval (IR) systems should be able to take natural language queries and retrieve documents written in natural languages. One way to process nat- ural language texts in IR is statistical. In this approach, linguistic units are extracted from the documents and queries. Those units extracted from the documents are used to index the documents. Those extracted from a query are weighted according to their degrees of importance. The most important units are chosen as query terms. An infor- mation retrieval system takes the selected query terms, matches the terms with the indexes of documents, calculates a retrieval status value for each matched document using a term-weighting method, and presents the user with potentially relevant docu- ments from a collection of documents. The performance of the information retrieval system in identifying relevant documents greatly depends on the text processing method used. We investigate the effectiveness of different text extraction methods and different term weighting methods in the context of Chinese information retrieval. It is a well- known problem that there is no separator between Chinese words, so Chinese words cannot be used easily to index or search texts as is possible in English. Therefore, some people use characters or n-grams as searchable tokens instead of words. We discuss two text extraction methods. One extraction method uses words, compound words, and phrases in the document and query texts as indexing terms to represent the texts. We refer to this method as the word-based approach. For this approach, text segmentation, which divides both document and query texts into linguistic units, is regarded not only as a necessary precursor but also as a bottleneck of this kind of system (Wu and Tseng 1993). The other extraction method is based on single Chinese characters, in which texts are indexed by the characters appearing in the texts (Chen 1992). By using sin- gle character approaches, a search could be conducted for any multi-character word or phrase identified at search time, no matter whether this word or phrase is in the dic- tionary. Both word-based and character-based methods have been used in information
17889266
Negative-Weight Cycle Algorithms
The problem of finding a negative cycle in a weighted, directed graph is discussed here. First the algorithm for printing out a negative cycle reachable from the sources, with the running time no worse than the Bellman-Ford algorithm for the single-source shortest-path problem, is presented. Then an approach with the same time complexity, which could be used for outputting a negative cycle that may not be reachable froms, is reported.
15675165
Maximum Common Subgraph: Upper Bound and Lower Bound Results
In bio informatics, the biological structure matching problems can be formulated as the problem of finding the maximum common subgraph. Among the many different variants of the maximum common subgraph problem, the maximum common induced subgraph of two graphs is of special interest. In this paper, first we derive the lower bound result for the exact algorithms of the maximum common induced subgraph of two graphs, based on the current research progress in the area of parameterized computation. Then we investigate the upper bound and design the approaches for addressing this problem. Basically, this problem can be reduced to find a maximum clique in the product graph of the two given graphs. In consideration of the upper bound result, the obtained lower bound result is asymptotically tight. We would like to point out that our lower bound result presented here is currently best-known