15346455
An Adaptive Poly-Parental Recombination Strategy
A genetic recombination framework is presented within which both the unit of inheritance of genetic material from a parent, and the number of parents involved in the creation of a new individual are potentially learnt through the evolution of competing subpopulations representing different strategies.
16182080
Self adaptation of mutation rates in a steady state genetic algorithm
This paper investigates the use of genetically encoded mutation rates within a "steady state" genetic algorithm in order to provide a self-adapting mutation mechanism for incremental evolution. One of the outcomes of this work will be a reduction in the number of parameters required to be set by the operator, thus facilitating the transfer of evolutionary computing techniques into an industrial setting. The NK family of landscapes is used to provide a variety of different problems with known statistical features in order to examine the effects of changing various parameters on the performance of the search. A number of policies are considered for the replacement of members of the population with newly created individuals and recombination of material between parents, and a number of methods of encoding for mutation rate are investigated. Empirical comparisons (using the "best-of current-population" metric) over a range of test problems show that a genetic algorithm incorporating the best "flavour" of the adaptive mutation operator outperformed the same algorithm when using any one of a variety of "standard" fixed mutation rates suggested by other authors.
17502763
Alignment Of Protein Structures With A Memetic Evolutionary Algorithm
CATEGORY: Real-World Applications 
 
Structural comparison of proteins is a core problem in modern biomedical research. Identifying structural similarities is essential for the assessment of the relationship between structure and function in proteins, and structural comparison techniques play a key role in applications like rational drug design. In this paper we consider a technique for protein structure comparison known as the maximum contact map overlap problem. In this problem, the similarity between two protein structures is computed by aligning the proteins to maximize the number of shared contacts in their corresponding contact maps. 
 
We present a new approach to this problem that uses a Multimeme evolutionary algorithm. The best solution found by our algorithm provides a lower bound on the value of the optimal structural alignment between the proteins. We have evaluated the Multimeme algorithm on a range of benchmark problems and compared with previous heuristics. We apply a linear programming method, which provides an upper bound, to assess the accuracy of our solutions. Our experiments show that the Multimeme evolutionary algorithm represents a significant improvement on the current state of the art in metaheuristics for this problem.
3062981
Recombination strategy adaptation via evolution of gene linkage
Analyses recombination strategies resulting from evolving gene linkage on a variety of fitness landscapes with known properties. The evolution of "blocks" of linked genes within a gene-pool makes it possible for the recombination strategy to vary in both the amount of genetic material exchanged during the formation of a new individual and in the number of parents contributing genetic material. The strategies evolved are examined in the light of the known properties of the landscapes. The results obtained explain the previously recorded good performance of the algorithm as a self-adaptive mechanism for function optimisation, as the amount and type of recombination is able to adapt to suit the landscape being searched, unlike conventional "fixed" operators.
17447930
Incorporation of adaptive mutation based on subjective evaluation in an interactive evolution strategy
A rapidly emerging model in the field of adaptive computing is the symbiosis of human expertise with evolutionary algorithms for user controlled and directed search. The two aspects in any EA are the selection of individuals to reproduce based on some measure of their quality or fitness and the application of variation operators to produce new solutions. In the context of interactive evolution, these aspects are compounded by the need for rapid convergence to prevent user fatigue and to provide the user some control over the generation of new solutions. Elsewhere, in the work of the authors (2004), we have examined different policies for best incorporating the user into the evaluation and selection process. In this paper, we explore the hypothesis that user assigned fitness represents a source of information that can be used to control the variation process: effectively to broaden the search if none of the current solutions is promising, or focus the search and improve convergence speed in the vicinity of a good solution. The main aims of this study, therefore, are to analyse the advantages of using a user directed adaptive mutation strategy over fixed mutation step sizes in terms of time to converge and robustness of the resulting solution. We present results showing a qualitatively different type of search process can be obtained by using the user assigned fitness to control the nature of the mutation process. There is also a synergy between user-based selection and fitness-based mutation control which out performs either system on its own.
796697
A tutorial for competent memetic algorithms: model, taxonomy, and design issues
The combination of evolutionary algorithms with local search was named "memetic algorithms" (MAs) (Moscato, 1989). These methods are inspired by models of natural systems that combine the evolutionary adaptation of a population with individual learning within the lifetimes of its members. Additionally, MAs are inspired by Richard Dawkin's concept of a meme, which represents a unit of cultural evolution that can exhibit local refinement (Dawkins, 1976). In the case of MA's, "memes" refer to the strategies (e.g., local refinement, perturbation, or constructive methods, etc.) that are employed to improve individuals. In this paper, we review some works on the application of MAs to well-known combinatorial optimization problems, and place them in a framework defined by a general syntactic model. This model provides us with a classification scheme based on a computable index D, which facilitates algorithmic comparisons and suggests areas for future research. Also, by having an abstract model for this class of metaheuristics, it is possible to explore their design space and better understand their behavior from a theoretical standpoint. We illustrate the theoretical and practical relevance of this model and taxonomy for MAs in the context of a discussion of important design issues that must be addressed to produce effective and efficient MAs.
5097884
Columbia Digital News System. An environment for briefing and search over multimedia information
In this paper we describe an ongoing research project called the Columbia Digital News System. The goal of this project is to develop a suite of effective interoperable tools with which people can find relevant information (text, images, video, and structured documents) from distributed sources and track it over a period of time. Our initial focus is on the development of a system with which researchers, journalists, and students can keep track of current news events in specific areas.
16384039
Experimenting with object navigation in parallel object databases
This paper addresses the problem of selecting the best object navigation strategy for a query to be run in parallel, when considering multiple alternative strategies. This is done by performing experiments with three pointer-based join algorithms, running simple and complex queries in a parallel ODMG-compliant object database system. We believe our results provide insights into how physical properties of queries impact on the performance of different joins operators in a parallel environment.
15945659
Distributed Query Processing on the Grid
Distributed query processing (DQP) has been widely used in data intensive applications where data of relevance to users is stored in multiple locations. This paper argues: (i) that DQP can be important in the Grid, as a means of providing high-level, declarative languages for integrating data access and analysis; and (ii) that the Grid provides resource management facilities that are useful to developers of DQP systems. As well as discussing and illustrating how DQP technologies can be deployed within the Grid, the paper describes a prototype implementation of a DQP system running over Globus.
18578929
Joint adaptive space and frequency basis selection
We develop a new method for building a representation of an image from a library of basis elements that is facilitated by a joint adaptive space and frequency (JASF) graph. The JASF graph combines partitionable frequency expansion and spatial segmentation of the image, symmetrically. We demonstrate by using a rate-distortion framework for basis selection that the JASF graph improves compression performance over recent wavelet packet and double-tree methods by offering exponentially more bases in which to represent the images.
3251263
Semantic video clustering across sources using bipartite spectral clustering
Data clustering is an important technique for visual data management. Most previous work focuses on clustering video data within single sources. We address the problem of clustering across sources, and propose novel spectral clustering algorithms for multisource clustering problems. Spectral clustering is a new discriminative method realizing clustering by partitioning data graphs. We represent multi-source data as bipartite or K-partite graphs, and investigate the spectral clustering algorithm under these representations. The algorithms are evaluated using the TRECVID-2003 corpus with semantic features extracted from speech transcripts and visual concept recognition results from videos. The experiments show that the proposed bipartite clustering algorithm significantly outperforms the regular spectral clustering algorithm in capturing cross-source associations.