28349058
A Constructive Proof that Trees Are Well-Quasi-Ordered Under Minors
The recent proof of Robertson and Seymour that graphs are well-quasi-ordered under minors immediately implies that a number of intesting problems have polynomial time algorithms. However, partially because of their non-constructive nature, these proofs do not yield any information about the algorithms. Here we present a constructive proof that trees are well-quasi-ordered under minors. This extends the results of Murty and Russell [MR90] who give a constructive proof of Higman's Lemma. Our proof is based on transforming finite sequences of trees to ordinals. We begin by describing a transformation which carries trees to finite strings of numbers and give an ordering on these strings which preserves the minor ordering on the underlying trees. We show that in our well-quasi-ordering argument, these strings are actually over a finite alphabet. This allows us to conclude the result. We require the well-ordering of the ordinal e0 for our proof.
26737462
The Parallel Complexity of Tree Embedding Problems
Abstract The question of the sequential complexity of various tree embedding problems arises in the recent work of Robertson and Seymour on graph miners; here we consider the parallel complexity of such problems. In particular, we present two CREW PRAM algorithms: an O (log 3 n ) time randomized algorithm for determining whether there is a topological embedding of one rooted tree in another and an O (log 2 n log log n ) time deterministic algorithm for determining whether or not a rooted tree with a degree constraint is a minor of a general rooted tree. These algorithms are two examples of a general technique that can be used for solving other problems on trees.
2367227
Parallel Algorithms For Vehicle Routing Problems
Vehicle routing problems involve the navigation of one or more vehicles through a network of locations. Locations have associated handling times as well as time windows during which they are active. The arcs connecting locations have time costs associated with them. In this paper, we consider two different problems in single vehicle routing. The first is to find least time cost routes between all pairs of nodes in a network for navigating vehicles; we call this the all pairs routing problem. We show that there is an O(log3 n) time parallel algorithm using a polynomial number of processors for this problem on a CREW PRAM. We next consider the problem in which a vehicle services all locations in a network. Here, locations can be passed through at any time but only serviced during their time window. The general problem is -complete under even fairly stringent restrictions but polynomial algorithms have been developed for some special cases. In particular, when the network is a line, there is no time cost in servicing a location, and all time windows are unbounded at either their lower or upper end, O(n2) algorithms have been developed. We show that under the same conditions, we can reduce this problem to the all pairs routing problem and therefore obtain an O(log3 n) time parallel algorithm on a CREW PRAM.
17058061
Sequential and Parallel Algorithms for Embedding Problems on Classes of Partial k-Trees
We present sequential and parallel algorithms for various embedding problems on bounded degree partial k-trees and k-connected partial k-trees; these include subgraph isomorphism and topological embedding, known to be NP-complete for general partial k-trees. As well as contributing to our understanding of the types of graphs for which these problems are tractable, this paper introduces methods for solving problems on graphs. In particular, we make use of the tree-decomposition of the graph to apply techniques used to solve problems on trees to solve problems on partial k-trees.
42435460
Embeddings of k-connected graphs of pathwidth k
We present O(n^3) embedding algorithms (subgraph isomorphism and its generalizations) for classes of graphs of bounded pathwidth, where n is the number of vertices in the graph. These include the first polynomial-time algorithm for minor containment and the first O(n^c) algorithm (c a constant independent of k) for topological embedding of graphs from subclasses of partial k-trees, as well as an O(n^2) algorithm for subgraph isomorphism. Of independent interest are structural properties of k-connected graphs of bounded pathwidth on which our algorithms are based. We also describe special cases which reduce to various generalizations of string matching, permitting more efficient solutions. Finally, we describe n^k^+^O^(^1^) algorithms for solving these problems on arbitrary graphs of pathwidth at most k.
38885821
Embeddings of k-Connected Graphs of Pathwidth k
We present O(n3) embedding algorithms (generalizing subgraph isomorphism) for classes of graphs of bounded pathwidth, where n is the number of vertices in the graph. These include the first polynomialtime algorithm for minor containment and the first O(nc) algorithm (c a constant independent of k) for topological embedding of graphs from subclasses of partial k-trees. Of independent interest are structural properties of k-connected graphs of bounded pathwidth on which our algorithms are based. We also describe special cases which reduce to various generalizations of string matching, permitting more efficient solutions.
40714150
A semantic mediation approach for problems in computational molecular biology
As great amount of data are being produced and accumulated in life sciences, information access and consequent integration in analytical and computational methods become critical issues in order to conduct research. In this work we describe how the synergic combination of a high-level programmable planner engine and formal semantics are suitable to resolve many information integration problems in molecular biology.
17115672
Emergent Semantics through Interaction in Image Databases
In this paper, we briefly discuss some aspects of image semantics and the role that it plays for the design of image databases. We argue that images don't have an intrinsic meaning, but that they are endowed with a meaning by placing them in the context of other images and by the user interaction. From this observation, we conclude that, in an image, database users should be allowed to manipulate not only the individual images, but also the relation between them. We present an interface model based on the manipulation of configurations of images.
207081206
Bounding the Size of Planar Intertwines
The proof of Wagner's conjecture by Robertson and Seymour gives a finite description of any family of graphs which is closed under the minor ordering. This description is a finite set of minimal graphs not in the family; these graphs are called the obstructions of the family. Since the intersection and union of two minor closed graph families is again a minor closed graph family, an interesting question regards computing the obstructions of the new family given the obstructions for the original two families. It is easy to compute the obstructions of the intersection, but nontrivial to compute those of the union. In this paper, we show that if the original families are planar then the planar obstructions of the union are no larger than nO(n2), where n is the size of the largest obstruction of the original families.
5331854
On the Scalable Computation of Large Sets of Integrals
We consider efficient strategies for the parallel and distributed computation of large sets of multivariate integrals. These arise in many applications such as computational chemistry, high energy physics and finite element problems. We use a hierarchical architecture which is highly scalable and allows parallelization not only at the domain level but also at the integral level. We present experimental results on a family of parametrized integrals and show that our approach leads to an efficient scalable load balanced algorithm. The methods are easily applicable to other areas where a large number of problems need to be solved efficiently on a parallel and distributed system.
11033759
Oblivious network design
Consider the following network design problem: given a network <i>G = (V, E)</i>, source-sink pairs {<i>s</i><inf><i>i</i></inf>, <i>t</i><inf><i>i</i></inf>} arrive and desire to send a unit of flow between themselves. The cost of the routing is this: if edge <i>e</i> carries a total of <i>f</i><inf><i>e</i></inf> flow (from all the terminal pairs), the cost is given by Σ <inf><i>e</i></inf><i>l</i>(<i>f</i><inf><i>e</i></inf>), where <i>l</i> is some concave cost function; the goal is to minimize the total cost incurred. However, we want the routing to be <i>oblivious</i>: when terminal pair {<i>s</i><inf><i>i</i></inf>, <i>t</i><inf><i>i</i></inf>} makes its routing decisions, it does not know the current flow on the edges of the network, nor the identity of the other pairs in the system. Moreover, it does not even know the identity of the function <i>l</i>, merely knowing that <i>l</i> is a concave function of the total flow on the edge. How should it (obliviously) route its one unit of flow? Can we get competitive algorithms for this problem?In this paper, we develop a framework to model <i>oblivious network design</i> problems (of which the above problem is a special case), and give algorithms with poly-logarithmic competitive ratio for problems in this framework (and hence for this problem). Abstractly, given a problem like the one above, the solution is a multicommodity flow producing a "load" on each edge of <i>L</i><inf><i>e</i></inf> = <i>l</i>(<i>f</i><inf>1</inf>(<i>e</i>),<i>f</i><inf>2</inf>(<i>e</i>), ..., <i>f</i><inf><i>k</i></inf>(<i>e</i>)), and the total cost is given by an "aggregation function" agg (<i>L</i><inf><i>e</i>1</inf>,...,<i>L</i><inf><i>em</i></inf>) of the loads of all edges. Our goal is to develop oblivious algorithms that approximately minimize the total cost of the routing, knowing the aggregation function agg, but merely knowing that <i>l</i> lies in some class C, and having no other information about the current state of the network. Hence we want algorithms that are simultaneously "function-oblivious" as well as "traffic-oblivious".The aggregation functions we consider are the max and σ objective functions, which correspond to the well-known measures of <i>congestion</i> and <i>total cost</i> of a network; in this paper, we prove the following:• If the aggregation function is Σ, we give an oblivious algorithm with <i>O</i>(log<sup>2</sup> <i>n</i>) competitive ratio whenever the load function <i>l</i> is in the class of <i>monotone sub-additive functions</i>. (Recall that our algorithm is also "function-oblivious"; it works whenever each edge has a load function <i>l</i> in the class.)• For the case when the aggregation function is max, we give an oblivious algorithm with <i>O</i>(log<sup>2</sup> <i>n</i> log log <i>n</i>) competitive ratio, when the load function <i>l</i> is a <i>norm;</i> we also show that such a competitive ratio is not possible for general sub-additive functions.These are the first such general results about oblivious algorithms for network design problems, and we hope the ideas and techniques will lead to more and improved results in this area.