31393341
Compiling abstract scientific workflows into Web service workflows
The authors present an approach for compiling "scientist-friendly" abstract workflow specifications into real-world executable workflows of Web service invocations, using a set of abstract-as-view definitions from a repository of abstract tasks. There have been a number of proposals and systems for scientific workflow management. However, our approach features unique aspects, in particular: the separation of abstract and concrete executable workflows; and the use of database mediation techniques to automatically translate AWFs into EWFs.
28954888
Modeling shape and topology of 3D images of biological specimens
This paper presents an efficient way of representing the geometry and topology of 3D images of biological specimens derived from electron microscopy. A vector quantization algorithm is used in order to select a reduced set of interior points that best approximates the probability density function of the original volumetric data. Object's geometry and topology are obtained from the point set by the use of the alpha shapes theory.
8323337
Modeling Functional Data Sources as Relations
In this paper we present a model of functional access to data that, we argue, is suitable for modeling a class of data repositories characterized by functional access, such as web sites. We discuss the problem of modeling such data sources as a set of relations, of determining whether a given query expressed on these relations can be translated into a combination of functions defined by the data sources, and of finding an optimal plan to do so.
9743987
Complex Visual Activity Recognition Using a Temporally Ordered Database
We propose using a temporally ordered database for complex visual activity recognition. We use a temporal precedence relation together with the assumption of fixed bounded temporal uncertainty of occurrence time of an atomic activity and comparatively large temporal extent of the complex activity. Under these conditions we identify the temporal structure of complex activities as a semiorder and design a database that has semiorder as its data model. A query algebra is then defined for this data model.
14666453
An Interpolated Volume Data Model
Publisher Summary This chapter explores the basic functionality of the volume data model. It considers examples from biology and volumes of measurement from quantum physics. The data model is similar in the two cases, but the operations that are commonly used are quite different. In the second case, for instance, one is often interested in conditions on the behavior of local differential operators, such as zero-flow surfaces, while in the biological case one has a mix of value conditions and geometric condition. With these two application fields, this chapter highlights the generality and flexibility of the model. The system is based on a commercial database, augmented with specialized functions to manipulate the volume data model. The chapter demonstrates various operations specifying queries both using a graphical user interface and entering them directly in structured query language (SQL) augmented with the volume algebra operations.
2635468
A System for Managing Alternate Models in Model-Based Mediation
In [1,3], we have described the problem of model-based mediation (MBM) as an extension of the global-as-view paradigm of information integration. The need for this extension arises in many application domains where the information sources to be integrated not only differ in their export formats, data models, and query capabilities, but have widely different schema with very little overlap in attributes. In scientific applications, the information sources come from different subdisciplines, and despite their poorly overlapping schema, can be integrated because they capture different aspects of the same scientific objects or phenomena, and can be conceptually integrated due to scientific reasons. In the MBM paradigm, a “mediation engineer” consults with domain experts to explicitly model the “glue knowledge” using a set of facts and rules at the mediator. Integrated views are defined in MBM on top of the exported schemas from the information sources together with the glue knowledge source that ties them together. We have successfully applied the MBM technique to develop the KIND mediator or Neuroscience information sources [1]-[4]. To accomplish this, sources in the MBM framework export their conceptual models (CMs), consisting of the logical schema, domain constraints, and object contexts, i.e., formulas that relate their conceptual schema with the global domain knowledge maintained at the mediator. Thus model-based mediation has a hybrid approach to information integration - on the one hand at the mediator integrated views are defined over source CMs and the Knowledge Map using a global-as-view approach; on the other hand, object-contexts of the source are defined as local-as-view.
11387042
Predicate learning and selective theory deduction for a difference logic solver
Design and verification of systems at the register-transfer (RT) or behavioral level require the ability to reason at higher levels of abstraction. Difference logic consists of an arbitrary Boolean combination of propositional variables and difference predicates and therefore provides an appropriate abstraction. In this paper, we present several new optimization techniques for efficiently deciding difference logic formulas. We use the lazy approach by combining a DPLL Boolean SAT procedure with a dedicated graph-based theory solver, which adds transitivity constraints among difference predicates on a "need-to" basis. Our new optimization techniques include flexible theory constraint propagation, selective theory deduction, and dynamic predicate learning. We have implemented these techniques in our lazy solver. We demonstrate the effectiveness of the proposed techniques on public benchmarks through a set of controlled experiments
19362396
Finding Largest Common Embeddable Subtrees
We consider the problem of determining the largest tree embeddable in two labeled trees T and T′, where the embedding relation is one of subgraph isomorphism or topological embedding. This problem is a generalization of classical tree pattern matching where the problem is to determine if one labeled tree is isomorphic to a subgraph of another. In this paper, we present a general framework for the variations on the problem, for the two embedding relations and for different assumptions about labeling of nodes in the trees. Our general paradigm provides sequential and parallel algorithms for the various subproblems, many of which have no other known solutions.
46604085
Assertion-based verification turns the corner
The "formal verification method: Getting around the Brick Wall" panel at the 2002Design Automation Conference highlighted the industrial emergence of assertion-based verification and the need to go beyond current methods. Moderator David Dill initiated a discussion on the three brick walls to formal verifcation methods: handling high computational complexity, formulating properties to check, and characterizing the set of legal inputs to the design underverification. The panelists addressed moving to higher abstraction levels and assertion-based.verification as two strategies to solve these problems.
24549782
Adaptive Fault Tolerant Hospital Resource Scheduling
In a distributed hospital system, different hospitals should collaborate among themselves for sharing their resources to provide better and faster service to the patients. We address the distributed hospital resource scheduling problem and apply the Generalized Partial Global Planning (GPGP) approach used for multiagent systems for the same. An adaptive coordination mechanism based on the contract net protocol is proposed to support inter-hospital collaboration. We have performed simulation studies and the experimental results show that our coordination mechanism performs better than commonly used schemes. Fault handling mechanisms are presented so that the system continues to provide service even in the presence of faults. The proposed approach is applicable in contexts other than the distributed hospital system as well.
600527
Learning from BDDs in SAT-based bounded model checking
Bounded Model Checking (BMC) based on Boolean Satisfiability (SAT) procedures has recently gained popularity as an alternative to BDD-based model checking techniques for finding bugs in large designs. In this paper, we explore the use of learning from BDDs, where learned clauses generated by BDD-based analysis are added to the SAT solver, to supplement its other learning mechanisms. We propose several heuristics for guiding this process, aimed at increasing the usefulness of the learned clauses, while reducing the overheads. We demonstrate the effectiveness of our approach on several industrial designs, where BMC performance is improved and the design can be searched up to a greater depth by use of BDD-based learning.