23004718
Tracking latent domain structures: An integration of pathfinder and Latent Semantic Analysis
Standard psychological scaling methods have been widely used as knowledge elicitation tools to uncover structural characteristics of a given domain. However, these methods traditionally rely on relatedness ratings from human experts, which is often time-consuming and tedious. We describe an integrated approach to knowledge elicitation and representation using Latent Semantic Analysis and Pathfinder Network Scaling techniques. The semantic structure of a subject domain can be automatically characterised from a collection of published documents in the domain. The method is illustrated with an example of organising a digital library in accordance to latent semantic structures.
468820
Tracing knowledge diffusion
Knowledge diffusion is the adaptation of knowledge in a broad range of scientific and engineering research and development. Tracing knowledge diffusion between science and technology is a challenging issue due to the complexity of identifying emerging patterns in a diverse range of possible processes. In this article, we describe an approach that combines complex network theory, network visualization, and patent citation analysis in order to improve the means for the study of knowledge diffusion. In particular, we analyze patent citations in the field of tissue engineering. We emphasize that this is the beginning of a longer-term endeavor that aims to develop and deploy effective, progressive, and explanatory visualization techniques for us to capture the dynamics of the evolution of patent citation networks. The work has practical implications on resource allocation, strategic planning, and science policy.
45076304
Spatial Semantic Virtual Worlds: The Structural Duality and Beyond
206109439
How did university departments interweave the Web: A study of connectivity and underlying factors
This paper presents two studies of the use of the WWW in Scottish universities and American land-grant universities. First, we investigated the relationship between the organisational profile of a university department in Scotland and its structural connectivity on the WWW. A Spearman rank order correlation analysis revealed a number of strong correlation relationships between structural connectivity measures and the organisational profile based on research assessment exercise ratings, teaching quality assessments, student‐staff ratios and funding levels. Linkage patterns from 13 Scottish academic sites to commercial sites in Britain and America highlighted the impact of culture and the appropriateness of information technologies on the acceptance of the WWW. The second study is a content survey of WWW-based education activities in American land-grant universities to investigate successful applications of these enabling techniques in education. The two studies together highlighted cultural, political and technological interactions in the use of the WWW. q 1998 Elsevier Science B.V. All rights reserved
15424500
Semantically modified diffusion limited aggregation for visualizing large-scale networks
Diffusion-limited aggregation (DLA) is a model of fractal growth. Computer models can simulate the fast aggregation of millions of particles. We propose a modified version of DLA, called semantically modified DLA (SM-DLA), for visualizing large-scale networks. SM-DLA introduces similarity measures between particles so that instead of attaching to the nearest particle in the aggregation, a new particle is stochastically directed to attach to particles that are similar to it. The results of our initial experiment with a co-citation network using SM-DLA are encouraging, suggesting that the algorithm has the potential as an alternative paradigm for visualizing large-scale networks. Further studies in this direction are recommended.
46129433
Behavioural Patterns of Collaborative Writing with Hypertext - A State Transition Approach
This study investigates behavioural patterns of collaborative writing with a hypertext system by using a state-transition approach. State-transition models are empirically developed for capturing the dynamic nature of collaborative writing. Users were frequently engaged in tasks such as exploration, organization, and editing, whereas the use of collaborative support functions was transient in nature. The study shows that state-transition analysis is an important approach to task analysis, requirements engineering, and human-computer interaction studies. This study has produced some valuable experiences and lessons for researchers and practitioners in collaborative writing.
195862034
Error bounded Pade approximation via bilinear conformal transformation
Since asymptotic waveform evaluation (AWE) was introduced, many interconnect model order reduction methods via Pade approximation have been proposed. Although the stability and precision of model reduction methods have been greatly improved, the following important question has not been answered: "What is the error bound in the time domain?". This problem is mainly caused by the "gap" between the frequency domain and the time domain, i.e., a good approximated transfer function in the frequency domain may not be a good approximation in the time domain. All of the existing methods approximate the transfer function directly in the frequency domain and hence can not provide error bounds in the time domain. In this paper, we present new moment matching methods which can provide guaranteed error bounds in the time domain. Our methods are based on the classic work by Teasdale (1953) which performs Pade approximation in a transformed domain by the bilinear conformal transformation s=(1-z)/(1+z).
9693361
Query translation scheme for heterogeneous XML data sources
In order to formulate a meaningful XML query, a user must have some knowledge of the schema of the XML documents to be queried. The query will succeed only if the schema of the actual documents is consistent with the user's information. When a user queries a collection of documents collected from heterogeneous XML data sources, there is a high possibility that these documents do not all conform to the same schema assumed by the user, thus causing the query to fail. In this paper, we try to solve this query and data schema mismatching problem by proposing a query translation scheme. Without attempting to solve the general problem of schema integration, we present an inclusion mapping algorithm that decides how compatible the schema of the query and the schema of the target XML documents are. Based upon the compatibility, the query will be executed directly, or translated according to the target schema and then executed, or rejected.
29297649
Shape from Photometric Stereo and Contours
In this work, we propose an alternative approach to 3D shape recovery by combining photometric stereo and shape from contours methods. Surfaces recovered by photometric stereo are aligned, adjusted and merged according to a preliminary 3D model obtained by shape from contours. Comparisons are conducted to evaluate the performances of different methods. It has been found that the proposed approach provides more accurate shape recovery than the photometric stereo and shape from contours methods.
14219803
A new method to measure the semantic similarity of GO terms
MOTIVATION
Although controlled biochemical or biological vocabularies, such as Gene Ontology (GO) (http://www.geneontology.org), address the need for consistent descriptions of genes in different data sources, there is still no effective method to determine the functional similarities of genes based on gene annotation information from heterogeneous data sources.


RESULTS
To address this critical need, we proposed a novel method to encode a GO term's semantics (biological meanings) into a numeric value by aggregating the semantic contributions of their ancestor terms (including this specific term) in the GO graph and, in turn, designed an algorithm to measure the semantic similarity of GO terms. Based on the semantic similarities of GO terms used for gene annotation, we designed a new algorithm to measure the functional similarity of genes. The results of using our algorithm to measure the functional similarities of genes in pathways retrieved from the saccharomyces genome database (SGD), and the outcomes of clustering these genes based on the similarity values obtained by our algorithm are shown to be consistent with human perspectives. Furthermore, we developed a set of online tools for gene similarity measurement and knowledge discovery.


AVAILABILITY
The online tools are available at: http://bioinformatics.clemson.edu/G-SESAME.


SUPPLEMENTARY INFORMATION
http://bioinformatics.clemson.edu/Publication/Supplement/gsp.htm.
2219091
Meta-programming through typeful code representation
By allowing the programmer to write code that can generate code at run-time, meta-programming offers a powerful approach to program construction. For instance, meta-programming can often be employed to enhance program efficiency and facilitate the construction of generic programs. However, meta-programming, especially in an untyped setting, is notoriously error-prone. In this paper, we aim at making meta-programming less error-prone by providing a type system to facilitate the construction of correct meta-programs. We first introduce some code constructors for constructing typeful code representation in which program variables are replaced with deBruijn indices, and then formally demonstrate how such typeful code representation can be used to support meta-programming. The main contribution of the paper lies in recognition and then formalization of a novel approach to typed meta-programming that is practical, general and flexible.