12508242
MEGICO: An Intelligent Knowledge Management Methodology
In this paper, we describe a knowledge management system (KMS) design and construction methodology. For this purpose, section 1 gives a brief introduction that justifies the need for a genuine KMS methodology, like MEGICO. Section 2 very briefly presents MEGICO and section 3 discusses the results and conclusions of its use.
38034228
On the Power of P Systems with DNA-Worm-Objects
We introduce a variant of P systems with string-objects - called worm-objects - inspired in the DNA computing area. These systems work with multisets of string-objects processed by splitting, mutation, replication and recombination. This model is simpler (we eliminate the replication operation) and more realistic (the recombination operation is changed by the simpler one of suffix-prefix or head-tail concatenation developed in the DNA computing framework) than the previous one. The result of a computation is the set of strings sent out of the system. We work with multisets of strings but we generate languages instead of sets of numbers. We prove that, without priority among rules or other control mechanisms, (1) these P systems with at most three membranes can generate all recursively enumerable languages, (2) with non-decreasing length mutation and splitting rules, three membranes are enough to generate the family of context-sensitive languages, and (3) with these restricted types of splitting and mutation rules, four membranes can generate the family of recursively enumerable languages.
1133493
A methodological framework for generic conceptualisation: problem-sensitivity in software engineering
Abstract The first step towards developing quality software is to conceptually model the problem raised in its own context. Software engineering, however, has traditionally focused on implementation concepts, and has paid little or no attention to the problem domain. This paper presents a generic methodological framework to guide conceptual modelling, focusing on the problem within its domain. This framework is defined considering aspects related to a generic conceptualisation, and its application to software engineering—illustrated using the IFIP Case—achieves the called-for problem-sensitivity.
12706002
Computer-Assisted Discrepancy Management - A Case Study in Research Transfer to Industry
This paper reports on the “repackaging” and transfer to industry of research results in ViewpointBased Requirements Engineering (VBRE). Our experience, as indicated here, is a particular case of the problems and solutions that small research groups can find in their transfer from theoretical work to practical application. In particular, starting with a formal approach for discrepancy management, we first developed a “light-weight version” of VBRE and empirically validated their most important claims. Then we developed a software tool (discRman) that encapsulates the main points of the approach and, finally, partner organizations used it in small projects. We think that this “theoretical-empirical-light-weight-tool” sequence can be applied in similar situations, especially by small research groups seeking for transfer of their results to industry. ACM Classification: D.2.1 (Software Engineering – Requirements/Specifications – Methodologies, Tools), D.2.8 (Software Engineering – Metrics – Performance measures), D.2.9 (Software Engineering – Management – Productivity)
7623756
Knowledge Management Systems Development: A Roadmap
This paper approaches the Knowledge Management Systems study, focusing not only in the establishment of essential development activities, but also in techniques, technologies, and tools for their support. Despite of the wide range of existing proposals for the development of this type of systems, none of them has achieved a level detailed enough to allow a direct application. This study is intended to be a palliative for the above-mentioned lack of detail by means of a development guide for Knowledge Management Systems. In this way, the proposed solution offers a clear definition concerning what has to be done and which type of mechanisms should be used for its development.
191535
Polymorphy and Hybridization in Genetically Programmed Networks
In this paper we discuss the polymorphic abilities of a new distributed representation for genetic programming, called Genetically Programmed Networks. These are inspired in a common structure in natural complex adaptive systems, where system functionality frequently emerges from the combined functionality of simple computational entities, densely interconnected for information exchange. A Genetically Programmed Network can be evolved into a distributed program, a rule based system or a neural network with simple adjustments to the evolutionary algorithm. The space of possible network topologies can also be easily controlled. This allows the fast exploration of various search spaces thus increasing the possibility of finding a (or a better) solution. Experimental results are presented to support our claims.
8072493
Authorization and Access Control in Adaptive Workflows
In recent years we have witnessed the development of adaptive workflow management systems. These systems offer an extended set of features to support both ad-hoc and evolutionary changes, while ensuring correctness of process definition and their running instances. Ad-hoc and evolutionary changes impose new access control requirements, which have been neglected by adaptive workflow research and are not met by existing models for traditional workflow management systems (WfMSs). In this paper, we extend the role-based access control model for adaptive workflows. This extension is done by defining authorizations for adaptive WfMSs and adaptive authorizations.
18125589
Zerg: A Very Fast BLAST Parser Library
SUMMARY
Zerg is a library of sub-routines that parses the output from all NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx) and returns the attributes of a BLAST report to the user. It is optimized for speed, being especially useful for large-scale genomic analysis. Benchmark tests show that Zerg is over two orders of magnitude faster than some widely used BLAST parsers.


AVAILABILITY
http://bioinfo.iq.usp.br/zerg
38014527
A Quality Design Solution for Object Synchronization
This paper presents a quality design solution, the Customizable Object Synchronization pattern, for object synchronization which decouples object synchronization from object concurrency and object functionality (sequential part). The solution described by this pattern provides encapsulation, extensibility, modularity and reuse of synchronization policies.
7409552
Swarm optimisation as a new tool for data mining
This paper proposes the use of particle swarm optimisers as a tool for data mining. To evaluate its usefulness, we empirically compare the performance of three variants of the particle optimiser with another evolutionary algorithm, namely a genetic algorithm, in rule discovery for classification tasks. Such tasks are considered core tools for decision support systems in a widespread area, ranging from the industry, commerce, military and scientific fields. The data sources used here for experimental testing are commonly used and considered as a de facto standard for rule discovery algorithms reliability ranking. The results obtained in these domains seem to indicate that particle swarm optimisers are competitive with other evolutionary techniques, and can be successfully applied to more demanding problem domains.