45004012
Dual-Hamiltonian-path-based multicasting on wormhole-routed star graph interconnection networks
The star graph interconnection network has been recognized as an attractive alternative to the popular hypercube network. In this paper we first address a dual-Hamiltonian-path-based (DHPB) routing model with two virtual channels based on two Hamiltonian paths and a network partitioning strategy for wormhole-routed star graph networks. Then, we propose three efficient multicast routing schemes on basis of such a model. The proposed schemes are network-selection-based (NSB), heuristic-network-selection-based (HNSB), and two-phase heuristic-network-selection-based (TP-HNSB) dual-path routing. All of the three proposed schemes are deadlock-free. Finally, experimental results are given to show our proposed three routing schemes outperform the unicast-based, the Hamiltonian-path, and the single-Hamiltonian-path-based (SHPB) dual-path routing schemes significantly.
6997568
Gathering-Load-Balanced Tree Protocol for Wireless Sensor Networks
Wireless communications and digital electronics have enabled the development of low-power, low-cost, multifunctional sensors. The functionality of sensor network mainly is the measurement collection. The previous proposed protocols mainly focus on broadcasting tree structure, but it may not be efficient in data gathering. In this paper, we propose novel tree architecture that is a dynamic, adjustable, load-balanced tree in sensor networks to decrease the energy utilization and to prolong the lifetime of sensors. A load-balanced tree can share the forwarding loads between non-leaf nodes. Due to the limit of tree topology, we try to adjust forming a tree that has similar amount of children between non-leaf nodes. When the energy of non-leaf node is lower than a designated threshold, the tree structure can be readjusted to prolong the lifetime of tree. In simulation, we compare our protocol with different adjustment phases and an existed protocol. From the result, our protocol can have better performance than others
45055182
Mining frequent tree-like patterns in large datasets
Sequential pattern mining is crucial to data mining domains. This paper proposes a novel data mining approach for exploring hierarchical tree structures, named tree-like patterns, representing the relationships for a pair of items in a sequence. Using tree-like patterns, the relationships for a pair of items can be identified in terms of the cause and effect. A novel technique that efficiently counts support values for tree-like patterns using a queue structure is proposed. In addition, this paper addresses an efficient scheme for determining the frequency of a tree-like pattern in a sequence using a dynamic programming approach. Each tree-like pattern embedded in a sequence is considered to have a certain valuable meaning or the degree of importance used in different applications. Two addressed formulas are applied to determine the degree of significance for a specific sequence, which denotes the degree of consecutive items in a tree-like pattern for a sequence. The larger the degree of significance a tree-like pattern has, the more the tree-like pattern is compacted in the sequence. The characteristics differentiating the explored patterns from those obtained with other schemes are discussed. A simulation analysis of the proposed data mining approach is utilized to demonstrate its efficacy. Finally, the proposed approach is designed and implemented in a data mining system integrated into a novel e-learning platform.
8131087
Multipath-Based Multicasting Strategies for Wormhole-Routed Star Graph Interconnection Networks
The star graph interconnection network has been recognized as an attractive alternative to the popular hypercube network. In this paper, we present a multipath-based multicast routing model for wormholerouted star graph networks, propose two efficient multipath routing schemes, and contrast the performance of the proposed schemes with the performance of the scheme presented in our previous work. Both of the two proposed schemes have been proven to be deadlock-free. The first scheme, simplemultipath routing, uses multiple independent paths for concurrent multicasting. The second scheme, two-phase multipath routing, includes two phases: source-to-relay and relay-to-destination. For each phase, multicasting is carried out using simple multipath routing. Experimental results show that, for short and medium messages with small message startup latencies, the proposed schemes reduce multicast latency more efficiently than other schemes.
12245644
Multicast communication in wormhole-routed star graph interconnection networks
Multicast, an important communication mechanism, is frequently applied in parallel computing. The star graph interconnection network, when compared with the hypercube network, being with low degree and small diameter, has been recognized to be an attractive alternative to the popular hypercube network. In this paper, we derive a node labeling formula based on a hamiltonian path and propose four efficient multicast routing schemes in wormhole-routed star networks with multidestination routing capability. All of the four proposed schemes are path-based and deadlock-free. The first scheme, dual-path routing, sends the message in parallel through two independent paths (toward high label nodes and low label nodes). The second one, shortcut-node-based dual-path routing, is similar to dual-path routing except that the routing tries to find a shortcut node to route the message as soon as possible to reduce the length of transmission path. The third one, multipath routing, is a multiple dual-path routing strategy that includes source-to-relay and relay-to-destination phases. The last scheme, proximity grouping routing, is similar to multipath routing except that in the partitioning step of source and destination nodes the relation of spatial locality of nodes is also taken into account to reduce the length of transmission paths. Finally, the experimental results are given to show that the performance based on unicast-based and traditional hamiltonian-path routing schemes can be improved significantly by the four proposed routing schemes respectively.
13064248
Path-based multicast communication in wormhole-routed star graph multicomputers
In this paper, we propose four efficient multicast routing schemes in wormhole-routed star networks with multidestination routing capability. All of the four proposed schemes are path-based and deadlock-free. The first scheme, dual-path routing, sends the message in parallel through two independent paths. The second one, shortcut-node-based datapath routing, is similar to dual-path routing except that the routing tries to find a shortcut node to route the message as soon as possible to reduce the length of transmission path. The third one, multipath routing, is a multiple dual-path routing strategy that includes source-to-relay and relay-to-destination phases. The last scheme, proximity grouping routing, is similar to multipath routing except that in the partitioning step of source and destination nodes the relation of spatial locality of nodes is also taken into account to reduce the length of transmission paths. Finally, the experimental results are given to show that the performance based on unicast-based and traditional Hamiltonian-path routing schemes can be improved significantly by the four proposed routing schemes respectively.
295636
Agent-Based Forwarding Strategies for Reducing Location Management Cost in Mobile Networks
An important issue in location management for dealing with user mobility in wireless networks is to reduce the cost associated with location updates and searches. The former operation occurs when a mobile user moves to a new location registration area and the network is being informed of the mobile user's current location; the latter operation occurs when there is a call for the mobile user and the network must deliver the call to the mobile user. In this paper, we propose and analyze a class of new agent-based forwarding schemes with the objective to reduce the location management cost in mobile wireless networks. We develop analytical models to compare the performance of the proposed schemes with existing location management schemes to demonstrate their feasibility and also to reveal conditions under which our proposed schemes are superior to existing ones. Our proposed schemes are particularly suitable for mobile networks with switches which can cover a large number of location registration areas.
11068219
An approximation algorithm for haplotype inference by maximum parsimony
This paper studies haplotype inference by maximum parsimony using population data. We define the optimal haplotype inference (OHI) problem as given a set of genotypes and a set of related haplotypes, find a minimum subset of haplotypes that can resolve all the genotypes. We prove that OHI is NP-hard and can be formulated as an integer quadratic programming (IQP) problem. To solve the IQP problem, we propose an iterative semi-definite programming based approximation algorithm, (called SDPHapInfer). We show that this algorithm finds a solution within a factor of O(logn) of the optimal solution, where n is the number of genotypes. This algorithm has been implemented and tested on a variety of simulated and biological data. In comparison with three other methods: HAPAR, HAPLOTYPER, and PHASE, the experimental results indicate that SDPHapInfer and HAPLOTYPER have similar error rates. In addition, the results generated by PHASE have lower error rates on some data but higher error rates on others. The error rates of HAPAR are higher than the others on biological data. In terms of efficiency, SDPHapInfer, HAPLOTYPER, and PHASE output a solution in a stable and consistent way, and they run much faster than HAPAR when the number of genotypes becomes large.
1816267
From Region Encoding To Extended Dewey: On Efficient Processing of XML Twig Pattern Matching
Finding all the occurrences of a twig pattern in an XML database is a core operation for efficient evaluation of XML queries. A number of algorithms have been proposed to process a twig query based on region encoding labeling scheme. While region encoding supports efficient determination of structural relationship between two elements, we observe that the information within a single label is very limited. In this paper, we propose a new labeling scheme, called extended Dewey. This is a powerful labeling scheme, since from the label of an element alone, we can derive all the elements names along the path from the root to the element. Based on extended Dewey, we design a novel holistic twig join algorithm, called TJFast. Unlike all previous algorithms based on region encoding, to answer a twig query, TJFast only needs to access the labels of the leaf query nodes. Through this, not only do we reduce disk access, but we also support the efficient evaluation of queries with wildcards in branching nodes, which is very difficult to be answered by algorithms based on region encoding. Finally, we report our experimental results to show that our algorithms are superior to previous approaches in terms of the number of elements scanned, the size of intermediate results and query performance.
10712046
Algorithms for identifying protein cross-links via tandem mass spectrometry
Cross-linking technology combined with tandem mass spectrometry (MS-MS) is a powerful method that provides a rapid solution to the discovery of protein-protein interactions and protein structures. We studied the problem of detecting cross-linked peptides and cross-linked amino acids from tandem mass spectral data. Our method consists of two steps: the first step finds two protein subsequences whose mass sum equals a given mass measured from the mass spectrometry; and the second step finds the best cross-linked amino acids in these two peptide sequences that are optimally correlated to a given tandem mass spectrum. We designed fast and space-efficient algorithms for these two steps, and implemented and tested them on experimental data of cross-linked Hemoglobin proteins.
8821639
Realistic video avatar
We present a system for the implementation of a photorealistic avatar using video captured from a user. This is achieved by constructing the dynamic video texture map and combining it with the 3D mesh model of the user to render the photorealistic avatar. The dynamic video texture map reflects the user's facial expressions and is generated by composing the cylindrical texture map of the user with constant updates either directly from the input video or derived from a temporal and spatial interpolation scheme. To derive the 3D mesh model for the user, we define feature points on a generic model and use the feature points identified on the video sequence to deform and obtain the avatar model. The goal of this realistic video avatar project is to provide a vivid representation of participants with a more realistic quality avatar, as compared to using only the facial animation parameters defined in MPEG-4 without the corresponding image updates. This scheme is suitable for conferencing applications because it requires much lower bandwidth than live video, and yet provides a 3D avatar representation for any virtual environment.