239739
A new distributed data mining model based on similarity
Distributed Data Mining (DDM) has been very active and enjoying a growing amount attention since its inception. Current DDM techniques regard the distributed data sets as a single virtual table and assume there exists a global model which could be generated if the data were combined/centralized. This paper proposes a similarity-based distributed data mining(SBDDM) framework which explicitly take the differences among distributed sources into consideration. A new similarity measure is introduced and its effectiveness is then evaluated and validated. This paper also illustrates the limitations of current DDM techniques through three concrete case studies. Finally distributed clustering within the SBDDM framework is also discussed.
1527832
Document clustering with cluster refinement and model selection capabilities
In this paper, we propose a document clustering method that strives to achieve: (1) a high accuracy of document clustering, and (2) the capability of estimating the number of clusters in the document corpus (i.e. the model selection capability). To accurately cluster the given document corpus, we employ a richer feature set to represent each document, and use the Gaussian Mixture Model (GMM) together with the Expectation-Maximization (EM) algorithm to conduct an initial document clustering. From this initial result, we identify a set of discriminative featuresfor each cluster, and refine the initially obtained document clusters by voting on the cluster label of each document using this discriminative feature set. This self-refinement process of discriminative feature identification and cluster label voting is iteratively applied until the convergence of document clusters. On the other hand, the model selection capability is achieved by introducing randomness in the cluster initialization stage, and then discovering a value C for the number of clusters N by which running the document clustering process for a fixed number of times yields sufficiently similar results. Performance evaluations exhibit clear superiority of the proposed method with its improved document clustering and model selection accuracies. The evaluations also demonstrate how each feature as well as the cluster refinement process contribute to the document clustering accuracy.
9813108
CoFD : An Algorithm for Non-distance Based Clustering in High Dimensional Spaces
The clustering problem, which aims at identifying the distribution of patterns and intrinsic correlations in large data sets by partitioning the data points into similarity clusters, has been widely studied. Traditional clustering algorithms use distance functions to measure similarity and are not suitable for high dimensional spaces. In this paper, we propose CoFD algorithm, which is a non-distance based clustering algorithm for high dimensional spaces. Based on the maximum likelihood principle, CoFD is to optimize parameters to maximize the likelihood between data points and the model generated by the parameters. Experimental results on both synthetic data sets and a real data set show the efficiency and effectiveness of CoFD.
15267641
Estimating Joint Probabilities from Marginal Ones
Estimating joint probabilities plays an important role in many data mining and machine learning tasks. In this paper we introduce two methods, minAB and prodAB, to estimate joint probabilities. Both methods are based on a light-weight structure, partition support. The core idea is to maintain the partition support of itemsets over logically disjoint partitions and then use it to estimate joint probabilities of item-sets of higher cardinalitiess. We present extensive mathematical analyses on both methods and compare their performances on synthetic datasets. We also demonstrate a case study of using the estimation methods in Apriori algorithm for fast association mining. Moreover, we explore the usefulness of the estimation methods in other mining/learning tasks. Experimental results show the effectiveness of the estimation methods.
1511154
Association-based similarity testing and its applications
This paper proposes a new similarity measure between basket datasets based on associations. The new measure is calculated from support counts using a formula inspired by information entropy. Experiments on both real and synthetic datasets show the effectiveness of the measure. This paper then investigates the applications of the similarity measure. It first studies the problem of finding a mapping between categorical database attribute sets using similarity measures. A generic approach for identifying such a mapping is proposed. The approach is implemented based on the similarity measure proposed in the paper and its performance has been evaluated and validated. Moreover, this paper also explores the applications of using the similarity measure to mine distributed datasets.
15097946
Algorithms for clustering high dimensional and distributed data
Clustering is the problem of identifying the distribution of patterns and intrinsic correlations in large data sets by partitioning the data points into similarity classes. The clustering problem has been widely studied in machine learning, databases, and statistics. This paper studies the problem of clustering high dimensional data. The paper proposes an algorithm called the CoFD algorithm, which is a non-distance based clustering algorithm for high dimensional spaces. Based on the Maximum Likelihood Principle, CoFD attempts to optimize its parameter settings to maximize the likelihood between data points and the model generated by the parameters. The distributed versions of the problem, called the D-CoFD algorithms, are also proposed. Experimental results on both synthetic and real data sets show the efficiency and effectiveness of CoFD and D-CoFD algorithms.
5743908
A Probabilistic Model for Clustering Text Documents with Multiple Fields
We address the problem of clustering documents with multiple fields, such as scientific literature with the distinct fields: title, abstract, keywords, main text and references. By taking into consideration of the distinct word distributions of each field, we propose a new probabilistic model, Field Independent Clustering Model (FICM), for clustering documents with multiple fields. The benefits of FICM come not only from integrating the discrimination abilities of each field but also from the power of selecting the most suitable component probabilistic model for each field. We examined the performance of FICM on the problem of clustering biomedical documents with three fields (title, abstract and MeSH). From the genomics track data of TREC 2004 and TREC 2005, we randomly generated 60 datasets where the number of classes in each dataset ranged from 3 to 12. By applying the appropriate configuration of generative models for each field, FICM outperformed a classical multinomial model in 59 out of the total 60 datasets, of which 47 were statistically significant at the 95% level, and FICM also outperformed a multivariate Bernoulli model in 52 out of the total 60 datasets, of which 36 were statistically significant at the 95% level.
7606118
Parsing Images into Region and Curve Processes
Natura scenes consist of a wide variety of stochastic patterns. While many patterns are represented well by statistical models in two dimensional regions as most image segmentation work assume, some other patterns are fundamentally one dimensional and thus cause major problems in segmentation. We call the former region processes and the latter curve processes. In this paper, we propose a stochastic algorithm for parsing an image into a number of region and curve processes. The paper makes the following contributions to the literature. Firstly, it presents a generative rope model for the curve processes in the form of Hidden Markov Model (HMM). The hidden layer is a Markov chain with each element being an image vase selected from an over-complete basis, such as Difference of Gaussians (DOG) or Difference of Offset Gaussians (DOOG) at various scales and orientations. The rope model accounts for the geometric smoothness and photometric coherence of the curve processes. Secondly, it integrates both 2D region models, such as textures, splines etc with 1D curve models uner the Bayes framework. Because both region and curve models are generative, they compete to explain input images in a layered representation. Thirdl, it achieves global optimization by effective Markov chain Monte Carlo methods in the sense of maximizing a posterior probability. The Markov chain consists of reversivle jumps and diffusions driven by bottom up information. The algorithm is applied to real images with satisfactory results. We verify the results through random synthesis and compare them against segmentations with region processes only.
122817250
Modeling complex motion by tracking and editing hidden Markov graphs
We propose a generative model for representing complex motion, such as wavy river, dancing fire and dangling cloth. Our generative method consists of four components: (1) A photometric model using primal sketch[8] which transfers an image into an attribute graph representation. Each vertex of the graph is a scaled and oriented image patch selected from a dictionary. The graph connects and aligns these patches. (2) A geometric model which characterizes the deformation of the attribute graph. (3) A dynamic model, which specifies the motion dynamics of these vertices (patches) and their interactions in the form of coupled Markov chains. (4) A topological model, which interprets the graph topological changes over time. We learn this generative model by a stochastic gradient algorithm implemented by Markov Chain Monte Carlo (MCMC) sampling. This method is shown to be effective in handling the topological changes of graphs. The correctness of the learned model is verified by the low-dimension reconstruction of the original image as well as by the realistic motion sequences it synthesized.
37654146
Moore Automata for the Supervisory Control of Robotic Manufacturing Workcells
The potential of flexible-manufacturing workcells (FMCs) to produce a family of parts in many possible orders of operations and choices of different machines is advantageous. Despite intensive research on the theoretical control of discrete-event systems (DESs), however, current techniques can still only be used for the supervisory control of simple cells. In this paper, a novel modeling and control synthesis technique is presented for FMCs that allow part-routing flexibility. Our proposed methodology combines Extended Moore Automata (EMA) and Controlled-Automata theories to synthesize supervisors for such FMCs.
14172606
A probabilistic model for mining implicit 'chemical compound-gene' relations from literature
MOTIVATION
The importance of chemical compounds has been emphasized more in molecular biology, and 'chemical genomics' has attracted a great deal of attention in recent years. Thus an important issue in current molecular biology is to identify biological-related chemical compounds (more specifically, drugs) and genes. Co-occurrence of biological entities in the literature is a simple, comprehensive and popular technique to find the association of these entities. Our focus is to mine implicit 'chemical compound and gene' relations from the co-occurrence in the literature.


RESULTS
We propose a probabilistic model, called the mixture aspect model (MAM), and an algorithm for estimating its parameters to efficiently handle different types of co-occurrence datasets at once. We examined the performance of our approach not only by a cross-validation using the data generated from the MEDLINE records but also by a test using an independent human-curated dataset of the relationships between chemical compounds and genes in the ChEBI database. We performed experimentation on three different types of co-occurrence datasets (i.e. compound-gene, gene-gene and compound-compound co-occurrences) in both cases. Experimental results have shown that MAM trained by all datasets outperformed any simple model trained by other combinations of datasets with the difference being statistically significant in all cases. In particular, we found that incorporating compound-compound co-occurrences is the most effective in improving the predictive performance. We finally computed the likelihoods of all unknown compound-gene (more specifically, drug-gene) pairs using our approach and selected the top 20 pairs according to the likelihoods. We validated them from biological, medical and pharmaceutical viewpoints.