14645772
Three power-aware routing algorithms for sensor networks
Summary This paper discusses online power-aware routing in large wireless ad hoc networks (especially sensor networks) for applications in which the message sequence is not known. We seek to optimize the lifetime of the network. We show that online power-aware routing does not have a constant competitive ratio to the off-line optimal algorithm. We develop an approximation algorithm called max –min zPmin that has a good empirical competitive ratio. To ensure scalability, we introduce a second online algorithm for power-aware routing. This hierarchical algorithm is called zone-based routing. Our experiments show that its performance is quite good. Finally, we describe a distributed version of this algorithm that does not depend on any centralization. Copyright  2003 John Wiley & Sons, Ltd.
17699208
A study on object tracking quality under probabilistic coverage in sensor networks
Sensor networks are used for a wide range of object tracking applications, such as vehicle tracking in military surveillance and wild animal tracking in habitat monitoring [1]. These applications, by their nature, enforce certain tracking quality and lifetime requirements. These two requirements, however, are two conflicting optimization goals due to the stringent energy constraints of sensor nodes.
1906525
A Robust and Secure RFID-Based Pedigree System (Short Paper)
There has been considerable interest recently on developing a system to track items like pharmaceutical drugs or food products. Such a system can help prevent counterfeits, aid product recall, and improve general logistics. In this paper, we present such system based on radio frequency identity (RFID) technology. Our solution provides the means of storing the entire movement of the item from original manufacturer to final consumer on the RFID tag itself, and also makes it more difficult to introduce large numbers of counterfeits. The solution also allows the end user to easily verify the authenticity of the item.
741471
Communication in disconnected ad hoc networks using message relay
An ad hoc network is formed by a group of mobile hosts upon a wireless network interface. Previous research in communication in ad hoc networks has concentrated on routing algorithms which are designed for fully connected networks. The traditional approach to communication in a disconnected ad hoc network is to let the mobile computer wait for network reconnection passively. This method may lead to unacceptable transmission delays. We propose an approach that guarantees message transmission in minimal time. In this approach, mobile hosts actively modify their trajectories to transmit messages. We develop algorithms that minimize the trajectory modifications under two different assumptions: (a) the movements of all the nodes in the system are known and (b) the movements of the hosts in the system are not known.
1284934
Online power-aware routing in wireless Ad-hoc networks
This paper discusses online power-aware routing in large wireless ad-hoc networks for applications where the message sequence is not known. We seek to optimize the lifetime of the network. We show that online power-aware routing does not have a constant competitive ratio to the off-line optimal algorithm. We develop an approximation algorithm called max-min zPmin that has a good empirical competitive ratio. To ensure scalability, we introduce a second online algorithm for power-aware routing. This hierarchical algorithm is called zone-based routing. Our experiments show that its performance is quite good.
10818971
Efficient Implementation of Public Key Cryptosystems on Mote Sensors (Short Paper)
We report our implementation of the RSA and ECC public-key cryptosystem on Berkeley Motes. We detail the implementation of 1024-bit RSA and 160-bit ECC cryptosystems on MICA mote sensors. We have achieved the performance of 0.79s for RSA public key operation and 21.5s for private operation, and 1.3s for ECC signature generation and 2.8s for verification. For comparison, we also show our new ECC implementation on TelosB motes with a signature time 1.60s and a verification time 3.30s. For the detailed description of the implementation, we refer to our technical report [13].
663178
Efficient Kernel Discriminant Analysis via QR Decomposition
Linear Discriminant Analysis (LDA) is a well-known method for feature extraction and dimension reduction. It has been used widely in many applications such as face recognition. Recently, a novel LDA algorithm based on QR Decomposition, namely LDA/QR, has been proposed, which is competitive in terms of classification accuracy with other LDA algorithms, but it has much lower costs in time and space. However, LDA/QR is based on linear projection, which may not be suitable for data with nonlinear structure. This paper first proposes an algorithm called KDA/QR, which extends the LDA/QR algorithm to deal with nonlinear data by using the kernel operator. Then an efficient approximation of KDA/QR called AKDA/QR is proposed. Experiments on face image data show that the classification accuracy of both KDA/QR and AKDA/QR are competitive with Generalized Discriminant Analysis (GDA), a general kernel discriminant analysis algorithm, while AKDA/QR has much lower time and space costs.
14819927
Gene functional classification by semi-supervised learning from heterogeneous data
Gene function discovery is an important and interesting problem in computational analysis of microarray data. In this paper, we investigate the use of a semi-supervised learning algorithm for inferring gene functional classifications from heterogeneous data set consisting of DNA microarray expression measurements and phylogenetic profiles from whole-genome sequence compassions. The semisupervised learning approach aims at minimizing the disagreement between individual models built from each separate information source by employing a co-updating method and making use of both labeled and unlabeled data. Our results suggest that the semisupervised approach could be used for gene functional classification. The data sets and the program code used for the experiments can be accessed from our webpage.
2653165
Skyline index for time series data
We have developed a new indexing strategy that helps overcome the curse of dimensionality for time series data. Our proposed approach, called skyline index, adopts new skyline bounding regions (SBR) to approximate and represent a group of time series data according to their collective shape. Skyline bounding regions allow us to define a distance function that tightly lower bounds the distance between a query and a group of time series data. In an extensive performance study, we investigate the impact of different distance functions by various dimensionality reduction and indexing techniques on the performance of similarity search, including index pages accessed, data objects fetched, and overall query processing time. In addition, we show that, for k-nearest neighbor queries, the proposed skyline index approach can be coupled with the state of the art dimensionality reduction techniques such as adaptive piecewise constant approximation (APCA) and improve its performance by up to a factor of 3.
1392741
Donuts, scratches and blanks: robust model-based segmentation of microarray images
MOTIVATION
Inner holes, artifacts and blank spots are common in microarray images, but current image analysis methods do not pay them enough attention. We propose a new robust model-based method for processing microarray images so as to estimate foreground and background intensities. The method starts with a very simple but effective automatic gridding method, and then proceeds in two steps. The first step applies model-based clustering to the distribution of pixel intensities, using the Bayesian Information Criterion (BIC) to choose the number of groups up to a maximum of three. The second step is spatial, finding the large spatially connected components in each cluster of pixels. The method thus combines the strengths of the histogram-based and spatial approaches. It deals effectively with inner holes in spots and with artifacts. It also provides a formal inferential basis for deciding when the spot is blank, namely when the BIC favors one group over two or three.


RESULTS
We apply our methods for gridding and segmentation to cDNA microarray images from an HIV infection experiment. In these experiments, our method had better stability across replicates than a fixed-circle segmentation method or the seeded region growing method in the SPOT software, without introducing noticeable bias when estimating the intensities of differentially expressed genes.


AVAILABILITY
spotSegmentation, an R language package implementing both the gridding and segmentation methods is available through the Bioconductor project (http://www.bioconductor.org). The segmentation method requires the contributed R package MCLUST for model-based clustering (http://cran.us.r-project.org).


CONTACT
fraley@stat.washington.edu.
62165038
IDR/QR: An Incremental Dimension Reduction Algorithm via QR Decomposition
Dimension reduction is a critical data preprocessing step for many database and data mining applications, such as efficient storage and retrieval of high-dimensional data. In the literature, a well-known dimension reduction algorithm is linear discriminant analysis (LDA). The common aspect of previously proposed LDA-based algorithms is the use of singular value decomposition (SVD). Due to the difficulty of designing an incremental solution for the eigenvalue problem on the product of scatter matrices in LDA, there has been little work on designing incremental LDA algorithms that can efficiently incorporate new data items as they become available. In this paper, we propose an LDA-based incremental dimension reduction algorithm, called IDR/QR, which applies QR decomposition rather than SVD. Unlike other LDA-based algorithms, this algorithm does not require the whole data matrix in main memory. This is desirable for large data sets. More importantly, with the insertion of new data items, the IDR/QR algorithm can constrain the computational cost by applying efficient QR-updating techniques. Finally, we evaluate the effectiveness of the IDR/QR algorithm in terms of classification error rate on the reduced dimensional space. Our experiments on several real-world data sets reveal that the classification error rate achieved by the IDR/QR algorithm is very close to the best possible one achieved by other LDA-based algorithms. However, the IDR/QR algorithm has much less computational cost, especially when new data items are inserted dynamically.