11415093
Integrating spatial, semantic, and social structures for knowledge management
We describe a unique type of knowledge management system, virtual reality-enabled multi-user virtual environments with spatialised semantic structures. They are designed to enable users to exploit emerging knowledge structures shared among a group of people and engage in social interaction with concurrent users in the virtual world. The design principle is illustrated by an example of how a heterogeneous collection of accumulated documents and user profiles is visualised. Resultant spatial structures reveal not only interdocument relationships, but also the interconnectivity between user profiles and documents.
46129433
Behavioural Patterns of Collaborative Writing with Hypertext - A State Transition Approach
This study investigates behavioural patterns of collaborative writing with a hypertext system by using a state-transition approach. State-transition models are empirically developed for capturing the dynamic nature of collaborative writing. Users were frequently engaged in tasks such as exploration, organization, and editing, whereas the use of collaborative support functions was transient in nature. The study shows that state-transition analysis is an important approach to task analysis, requirements engineering, and human-computer interaction studies. This study has produced some valuable experiences and lessons for researchers and practitioners in collaborative writing.
206109439
How did university departments interweave the Web: A study of connectivity and underlying factors
This paper presents two studies of the use of the WWW in Scottish universities and American land-grant universities. First, we investigated the relationship between the organisational profile of a university department in Scotland and its structural connectivity on the WWW. A Spearman rank order correlation analysis revealed a number of strong correlation relationships between structural connectivity measures and the organisational profile based on research assessment exercise ratings, teaching quality assessments, student‐staff ratios and funding levels. Linkage patterns from 13 Scottish academic sites to commercial sites in Britain and America highlighted the impact of culture and the appropriateness of information technologies on the acceptance of the WWW. The second study is a content survey of WWW-based education activities in American land-grant universities to investigate successful applications of these enabling techniques in education. The two studies together highlighted cultural, political and technological interactions in the use of the WWW. q 1998 Elsevier Science B.V. All rights reserved
468820
Tracing knowledge diffusion
Knowledge diffusion is the adaptation of knowledge in a broad range of scientific and engineering research and development. Tracing knowledge diffusion between science and technology is a challenging issue due to the complexity of identifying emerging patterns in a diverse range of possible processes. In this article, we describe an approach that combines complex network theory, network visualization, and patent citation analysis in order to improve the means for the study of knowledge diffusion. In particular, we analyze patent citations in the field of tissue engineering. We emphasize that this is the beginning of a longer-term endeavor that aims to develop and deploy effective, progressive, and explanatory visualization techniques for us to capture the dynamics of the evolution of patent citation networks. The work has practical implications on resource allocation, strategic planning, and science policy.
15424500
Semantically modified diffusion limited aggregation for visualizing large-scale networks
Diffusion-limited aggregation (DLA) is a model of fractal growth. Computer models can simulate the fast aggregation of millions of particles. We propose a modified version of DLA, called semantically modified DLA (SM-DLA), for visualizing large-scale networks. SM-DLA introduces similarity measures between particles so that instead of attaching to the nearest particle in the aggregation, a new particle is stochastically directed to attach to particles that are similar to it. The results of our initial experiment with a co-citation network using SM-DLA are encouraging, suggesting that the algorithm has the potential as an alternative paradigm for visualizing large-scale networks. Further studies in this direction are recommended.
45076304
Spatial Semantic Virtual Worlds: The Structural Duality and Beyond
9693361
Query translation scheme for heterogeneous XML data sources
In order to formulate a meaningful XML query, a user must have some knowledge of the schema of the XML documents to be queried. The query will succeed only if the schema of the actual documents is consistent with the user's information. When a user queries a collection of documents collected from heterogeneous XML data sources, there is a high possibility that these documents do not all conform to the same schema assumed by the user, thus causing the query to fail. In this paper, we try to solve this query and data schema mismatching problem by proposing a query translation scheme. Without attempting to solve the general problem of schema integration, we present an inclusion mapping algorithm that decides how compatible the schema of the query and the schema of the target XML documents are. Based upon the compatibility, the query will be executed directly, or translated according to the target schema and then executed, or rejected.
2888098
Evolutionary interactive music composition
This paper proposes the CFE framework---Composition, Feedback, and Evolution---and presents an interactive music composition system. The system composes short, manageable pieces of music by interacting with users. The most important features of the system include creating customized music according to the user preference and providing the facilities specifically designed for producing large amounts of music. We present the structure as well as the implementation of the system and the auxiliary functionalities that enhance the system. We also introduce the auto-feedback test with which we verify and evaluate the interactive music composition system.
14219803
A new method to measure the semantic similarity of GO terms
MOTIVATION
Although controlled biochemical or biological vocabularies, such as Gene Ontology (GO) (http://www.geneontology.org), address the need for consistent descriptions of genes in different data sources, there is still no effective method to determine the functional similarities of genes based on gene annotation information from heterogeneous data sources.


RESULTS
To address this critical need, we proposed a novel method to encode a GO term's semantics (biological meanings) into a numeric value by aggregating the semantic contributions of their ancestor terms (including this specific term) in the GO graph and, in turn, designed an algorithm to measure the semantic similarity of GO terms. Based on the semantic similarities of GO terms used for gene annotation, we designed a new algorithm to measure the functional similarity of genes. The results of using our algorithm to measure the functional similarities of genes in pathways retrieved from the saccharomyces genome database (SGD), and the outcomes of clustering these genes based on the similarity values obtained by our algorithm are shown to be consistent with human perspectives. Furthermore, we developed a set of online tools for gene similarity measurement and knowledge discovery.


AVAILABILITY
The online tools are available at: http://bioinformatics.clemson.edu/G-SESAME.


SUPPLEMENTARY INFORMATION
http://bioinformatics.clemson.edu/Publication/Supplement/gsp.htm.
198001
Proper interval graphs and the guard problem
This paper is a study of the hamiltonicity of proper interval graphs with applications to the guard problem in spiral polygons. We prove that proper interval graphs with ?2 vertices have hamiltonian paths, those with ?3 vertices have hamiltonian cycles, and those with ?4 vertices are hamiltonian-connected if and only if they are, respectively, 1-, 2-, or 3-connected. We also study the guard problem in spiral polygons by connecting the class of nontrivial connected proper interval graphs with the class of stick-intersection graphs of spiral polygons.
15011824
Nearly Optimal One-to-Many Parallel Routing in Star Networks
Star networks were proposed recently as an attractive alternative to the well-known hypercube models for interconnection networks. Extensive research has been performed that shows that star networks are as versatile as hypercubes. This paper is an effort in the same direction. Based on the well-known paradigms, we study the one-to-many parallel routing problem on star networks and develop an improved routing algorithm that finds n-1 node-disjoint paths between one node and a set of other n-1 nodes in the n-star network. These parallel paths are proven of minimum length within a small additive constant, and the running time of our algorithm is bounded by O(n/sup 2/). More specifically, given a node s and n-1 other nodes {t/sub 1/, t/sub 2/, ..., t/sub n-1/} in the n-star network, our algorithm constructs n-1 node-disjoint paths P/sub 1/, P/sub 2/, ..., P/sub n-1/, where P/sub i/ is a path from s to t/sub j/ of length at most dist(s, t/sub j/)+6 and dist(s, t/sub j/) is the distance, i.e., the length of a shortest path, from s to t/sub j/, for i=1, 2, ..., n-1.The best bound on the path length by previously known algorithms for the same problem is 5(n-2)/spl ap/10/spl Delta//sub n//3, where /spl Delta//sub n/=max{dist(s, t)} is the diameter of the n-star network.