206854715
Task Migration in 2D Wormhole-Routed Mesh Multicomputers
In this paper, two simple task migration schemes are first proposed for 2D mesh, multicomputers with supporting X-Y wormhole routing in the one-port communication model. We next propose a hybrid task migration scheme which attempts to minimize the total transmission latency. Finally, we compare all of our proposed task migration schemes using performance analysis.
45055182
Mining frequent tree-like patterns in large datasets
Sequential pattern mining is crucial to data mining domains. This paper proposes a novel data mining approach for exploring hierarchical tree structures, named tree-like patterns, representing the relationships for a pair of items in a sequence. Using tree-like patterns, the relationships for a pair of items can be identified in terms of the cause and effect. A novel technique that efficiently counts support values for tree-like patterns using a queue structure is proposed. In addition, this paper addresses an efficient scheme for determining the frequency of a tree-like pattern in a sequence using a dynamic programming approach. Each tree-like pattern embedded in a sequence is considered to have a certain valuable meaning or the degree of importance used in different applications. Two addressed formulas are applied to determine the degree of significance for a specific sequence, which denotes the degree of consecutive items in a tree-like pattern for a sequence. The larger the degree of significance a tree-like pattern has, the more the tree-like pattern is compacted in the sequence. The characteristics differentiating the explored patterns from those obtained with other schemes are discussed. A simulation analysis of the proposed data mining approach is utilized to demonstrate its efficacy. Finally, the proposed approach is designed and implemented in a data mining system integrated into a novel e-learning platform.
8131087
Multipath-Based Multicasting Strategies for Wormhole-Routed Star Graph Interconnection Networks
The star graph interconnection network has been recognized as an attractive alternative to the popular hypercube network. In this paper, we present a multipath-based multicast routing model for wormholerouted star graph networks, propose two efficient multipath routing schemes, and contrast the performance of the proposed schemes with the performance of the scheme presented in our previous work. Both of the two proposed schemes have been proven to be deadlock-free. The first scheme, simplemultipath routing, uses multiple independent paths for concurrent multicasting. The second scheme, two-phase multipath routing, includes two phases: source-to-relay and relay-to-destination. For each phase, multicasting is carried out using simple multipath routing. Experimental results show that, for short and medium messages with small message startup latencies, the proposed schemes reduce multicast latency more efficiently than other schemes.
17694458
Optimal broadcasting on incomplete star graph interconnection networks
Broadcasting is an important collective communication operation in many applications which use parallel computing. In this paper, we focus on designing broadcasting algorithms for general incomplete star graphs. We propose two optimal one-to-all broadcasting algorithms for incomplete star graphs with a single-port communication model. An incomplete star graph with N nodes, where (n - 1)! < N < n!, is a subgraph of an n-dimensional star graph. The first scheme is single-message one-to-all broadcasting that takes O(nlogn) steps. The second one is multi-message one-to-all broadcasting that takes O(nlogn + m) steps.
6997568
Gathering-Load-Balanced Tree Protocol for Wireless Sensor Networks
Wireless communications and digital electronics have enabled the development of low-power, low-cost, multifunctional sensors. The functionality of sensor network mainly is the measurement collection. The previous proposed protocols mainly focus on broadcasting tree structure, but it may not be efficient in data gathering. In this paper, we propose novel tree architecture that is a dynamic, adjustable, load-balanced tree in sensor networks to decrease the energy utilization and to prolong the lifetime of sensors. A load-balanced tree can share the forwarding loads between non-leaf nodes. Due to the limit of tree topology, we try to adjust forming a tree that has similar amount of children between non-leaf nodes. When the energy of non-leaf node is lower than a designated threshold, the tree structure can be readjusted to prolong the lifetime of tree. In simulation, we compare our protocol with different adjustment phases and an existed protocol. From the result, our protocol can have better performance than others
13064248
Path-based multicast communication in wormhole-routed star graph multicomputers
In this paper, we propose four efficient multicast routing schemes in wormhole-routed star networks with multidestination routing capability. All of the four proposed schemes are path-based and deadlock-free. The first scheme, dual-path routing, sends the message in parallel through two independent paths. The second one, shortcut-node-based datapath routing, is similar to dual-path routing except that the routing tries to find a shortcut node to route the message as soon as possible to reduce the length of transmission path. The third one, multipath routing, is a multiple dual-path routing strategy that includes source-to-relay and relay-to-destination phases. The last scheme, proximity grouping routing, is similar to multipath routing except that in the partitioning step of source and destination nodes the relation of spatial locality of nodes is also taken into account to reduce the length of transmission paths. Finally, the experimental results are given to show that the performance based on unicast-based and traditional Hamiltonian-path routing schemes can be improved significantly by the four proposed routing schemes respectively.
2057857
Gene-finding via tandem mass spectrometry
We propose a new gene-finding methodology that combines high performance liquid chromatograph (HPLC)-tandem mass spectrometry experiments with a fast computer algorithm to locate coding regions and introns. Proteins are first extracted from cells and digested by enzymes, and then the resulting peptides are separated and analyzed by HPLC-tandem mass spectrometry. We designed an algorithm to find DNA coding sequences, corresponding to open reading frames (ORF), in the genome such that their translated amino acid sequences are optimally correlated with these tandem mass spectra. In this algorithm, we also allow one gap, corresponding to an intron, between two DNA coding sequences, such that their concatenation becomes one coding sequence. Finally, the algorithm assembles these candidate coding sequences and introns into gene structures. Our algorithm was implemented to predict genes on 4 contigs with a total of 123 kbps using two sets of simulated digestion- HPLC-tandem mass spectrometry data of 2523 Caenorhabditis elegans Chromosome IV proteins, digested by trypsin and Asp-N respectively. Among 15 annotated genes in the forward strand, all 98 exons are hit by the predicted no-gap coding sequences, and 60 out of 83 introns are correctly predicted. We also tested gene structure prediction in a contig containing 3 genes. Combining splicing site predictions with predicted coding sequences and introns, we found all 3 gene structures.
295636
Agent-Based Forwarding Strategies for Reducing Location Management Cost in Mobile Networks
An important issue in location management for dealing with user mobility in wireless networks is to reduce the cost associated with location updates and searches. The former operation occurs when a mobile user moves to a new location registration area and the network is being informed of the mobile user's current location; the latter operation occurs when there is a call for the mobile user and the network must deliver the call to the mobile user. In this paper, we propose and analyze a class of new agent-based forwarding schemes with the objective to reduce the location management cost in mobile wireless networks. We develop analytical models to compare the performance of the proposed schemes with existing location management schemes to demonstrate their feasibility and also to reveal conditions under which our proposed schemes are superior to existing ones. Our proposed schemes are particularly suitable for mobile networks with switches which can cover a large number of location registration areas.
17774823
Scalable Partitioning and Exploration of Chemical Spaces Using Geometric Hashing
Virtual screening (VS) has become a preferred tool to augment high-throughput screening(1) and determine new leads in the drug discovery process. The core of a VS informatics pipeline includes several data mining algorithms that work on huge databases of chemical compounds containing millions of molecular structures and their associated data. Thus, scaling traditional applications such as classification, partitioning, and outlier detection for huge chemical data sets without a significant loss in accuracy is very important. In this paper, we introduce a data mining framework built on top of a recently developed fast approximate nearest-neighbor-finding algorithm(2) called locality-sensitive hashing (LSH) that can be used to mine huge chemical spaces in a scalable fashion using very modest computational resources. The core LSH algorithm hashes chemical descriptors so that points close to each other in the descriptor space are also close to each other in the hashed space. Using this data structure, one can perform approximate nearest-neighbor searches very quickly, in sublinear time. We validate the accuracy and performance of our framework on three real data sets of sizes ranging from 4337 to 249 071 molecules. Results indicate that the identification of nearest neighbors using the LSH algorithm is at least 2 orders of magnitude faster than the traditional k-nearest-neighbor method and is over 94% accurate for most query parameters. Furthermore, when viewed as a data-partitioning procedure, the LSH algorithm lends itself to easy parallelization of nearest-neighbor classification or regression. We also apply our framework to detect outlying (diverse) compounds in a given chemical space; this algorithm is extremely rapid in determining whether a compound is located in a sparse region of chemical space or not, and it is quite accurate when compared to results obtained using principal-component-analysis-based heuristics.
17692093
Life after Video Coding Standards: Rate Shaping and Error Concealment
Is there life after video coding standards? One might think that research has no room to advance with the video coding standards already defined. On the contrary, exciting research opportunities arise after the standards are specified. In this paper, we introduce two standard-related research areas: rate shaping and error concealment, as examples of interesting research that finds its context in standards. Experiment results are also shown.
29539871
On the effectiveness of classification trees for test case construction
Abstract The notion of the classification-hierarchy table and the classification-tree construction algorithm provide a systematic approach to the construction of classification trees from given sets of classifications and their associated classes. Using classification trees, the set of all possible test cases can be constructed from functional specifications. This paper extends their study by introducing a metric to measure the effectiveness of a classification tree with respect to the construction of test cases, and providing ways to improve this effectiveness.