8827382
Efficient Hierarchical Clustering Algorithms Using Partially Overlapping Partitions
Clustering is an important data exploration task. A prominent clustering algorithm is agglomerative hierarchical clustering. Roughly, in each iteration, it merges the closest pair of clusters. It was first proposed way back in 1951, and since then there have been numerous modifications. Some of its good features are: a natural, simple, and non-parametric grouping of similar objects which is capable of finding clusters of different shape such as spherical and arbitrary. But large CPU time and high memory requirement limit its use for large data. In this paper we show that geometric metric (centroid, median, and minimum variance) algorithms obey a 90-10 relationship where roughly the first 90iterations are spent on merging clusters with distance less than 10the maximum merging distance. This characteristic is exploited by partially overlapping partitioning. It is shown with experiments and analyses that different types of existing algorithms benefit excellently by drastically reducing CPU time and memory. Other contributions of this paper include comparison study of multi-dimensional vis-a-vis single-dimensional partitioning, and analytical and experimental discussions on setting of parameters such as number of partitions and dimensions for partitioning.
14543078
Resource description framework: metadata and its applications
Universality, the property of the Web that makes it the largest data and information source in the world, is also the property behind the lack of a uniform organization scheme that would allow easy access to data and information. A semantic web, wherein different applications and Web sites can exchange information and hence exploit Web data and information to their full potential, requires the information about Web resources to be represented in a detailed and structured manner. Resource Description Framework (RDF), an effort in this direction supported by the World Wide Web Consortium, provides a means for the description of metadata which is a necessity for the next generation of interoperable Web applications. The success of RDF and the semantic web will depend on (1) the development of applications that prove the applicability of the concept, (2) the availability of application interfaces which enable the development of such applications, and (3) databases and inference systems that exploit RDF to identify and locate most relevant Web resources. In addition, many practical issues, such as security, ease of use, and compatibility, will be crucial in the success of RDF. This survey aims at providing a glimpse at the past, present, and future of this upcoming technology and highlights why we believe that the next generation of the Web will be more organized, informative, searchable, accessible, and, most importantly, useful. It is expected that knowledge discovery and data mining can benefit from RDF and the Semantic Web.
5365583
NeuroRule: A Connectionist Approach to Data Mining
Classification, which involves finding rules that partition a given da.ta set into disjoint groups, is one class of data mining problems. Approaches proposed so far for mining classification rules for large databases are mainly decision tree based symbolic learning methods. The connectionist approach based on neura.l networks has been thought not well suited for data mining. One of the major reasons cited is that knowledge generated by neural networks is not explicitly represented in the form of rules suitable for verification or interpretation by humans. This paper examines this issue. With our newly developed algorithms, rules which are similar to, or more concise than those generated by the symbolic methods can be extracted from the neural networks. The data mining process using neural networks with the emphasis on rule extraction is described. ExperimenM results and comparison with previously published works are presented.
8367210
Sensor Sequence Modeling for Driving
Intelligent systems in automobiles need to be aware of the driving and driver context. Available sensor data stream has to be modeled and monitored in order to do so. Currently there exist no building blocks for hierarchical modeling of driving. By semi-supervised segmentation such building blocks can be discovered. We call them drivemes in analogy to phonemes. More parsimonious modeling of driving becomes now possible.
46794790
Analysis of Hidden Representations by Greedy Clustering
The hidden layer of backpropagation neural networks (NNs) holds the key to the networks' success in solving pattern classification problems. The units in the hidden layer encapsulate the network's internal representations of the outside world described by the input data. this paper, the hidden representations of trained networks are investigated by means simple greedy clustering algorithm. This clustering algorithm is applied to networks have been trained to solve well-known problems: the monks problems, the 5-bit problem and the contiguity problem. The results from applying the algorithm to problems with known concepts provide us with a better understanding of NN learning. These also explain why NNs achieve higher predictive accuracy than that of decision-tree methods. The results of this study can be readily applied to rule extraction from Production rules are extracted for the parity and the monks problems, as well as benchmark data set: Pima Indian diabetes diagnosis. The extracted rules from the Indi...
16386059
A Monotonic Measure for Optimal Feature Selection
Feature selection is a problem of choosing a subset of relevant features. In general, only exhaustive search can bring about the optimal subset. With a monotonic measure, exhaustive search can be avoided without sacrificing optimality. Unfortunately, most error- or distancebased measures are not monotonic. A new measure is employed in this work that is monotonic and fast to compute. The search for relevant features according to this measure is guaranteed to be complete but not exhaustive. Experiments are conducted for verification.
2204750
A model of textual affect sensing using real-world knowledge
This paper presents a novel way for assessing the affective qualities of natural language and a scenario for its use. Previous approaches to textual affect sensing have employed keyword spotting, lexical affinity, statistical methods, and hand-crafted models. This paper demonstrates a new approach, using large-scale real-world knowledge about the inherent affective nature of everyday situations (such as "getting into a car accident") to classify sentences into "basic" emotion categories. This commonsense approach has new robustness implications.Open Mind Commonsense was used as a real world corpus of 400,000 facts about the everyday world. Four linguistic models are combined for robustness as a society of commonsense-based affect recognition. These models cooperate and compete to classify the affect of text. Such a system that analyzes affective qualities sentence by sentence is of practical value when people want to evaluate the text they are writing. As such, the system is tested in an email writing application. The results suggest that the approach is robust enough to enable plausible affective text user interfaces.
17590289
Power-Law Tradeoffs Between Optical and Electronic Switching
Designing a transport network requires finding the most cost-effective combination of electronic and optical switching to support the given demands. This task is not trivial because the solution space is so large. Furthermore, there are many interacting design variables. In electronic switching, the cost is a function of the number of packets that are switched in the routers, which directly corresponds to the average hop count (H̄). The dominant cost of optical switching is a function of the total number of wavelengths used in the network (S) or the maximum number of wavelengths used on any fiber (W ) and the number of transceivers (L) used. In this paper, we show that there is a power-law relationship between each pair of these variables, and we quantify the power-law exponent for many different types of topologies. Our results allow a network designer to choose not only the most cost-effective combination of electronic and optical switching, but also the best fiber topology to achieve the minimal total cost.
893749
A Distributed and Efficient Flooding Scheme Using 1-Hop Information in Mobile Ad Hoc Networks
Flooding is one of the most fundamental operations in mobile ad hoc networks. Traditional implementation of flooding suffers from the problems of excessive redundancy of messages, resource contention, and signal collision. This causes high protocol overhead and interference with the existing traffic in the networks. Some efficient flooding algorithms were proposed to avoid these problems. However, these algorithms either perform poorly in reducing redundant transmissions or require each node to maintain 2-hop (or more) neighbors information. In the paper, we study the sufficient and necessary condition of 100 percent deliverability for flooding schemes that are based on only 1-hop neighbors information. We further propose an efficient flooding algorithm that achieves the local optimality in two senses: 1) the number of forwarding nodes in each step is minimal and 2) the time complexity for computing forwarding nodes is the lowest, which is O(nlogn), where n is the number of neighbors of a node. Extensive simulations have been conducted and simulation results have shown the excellent performance of our algorithm
10722883
Use of extreme patient samples for outcome prediction from gene expression data
MOTIVATION
Patient outcome prediction using microarray technologies is an important application in bioinformatics. Based on patients' genotypic microarray data, predictions are made to estimate patients' survival time and their risk of tumor metastasis or recurrence. So, accurate prediction can potentially help to provide better treatment for patients.


RESULTS
We present a new computational method for patient outcome prediction. In the training phase of this method, we make use of two types of extreme patient samples: short-term survivors who got an unfavorable outcome within a short period and long-term survivors who were maintaining a favorable outcome after a long follow-up time. These extreme training samples yield a clear platform for us to identify relevant genes whose expression is closely related to the outcome. The selected extreme samples and the relevant genes are then integrated by a support vector machine to build a prediction model, by which each validation sample is assigned a risk score that falls into one of the special pre-defined risk groups. We apply this method to several public datasets. In most cases, patients in high and low risk groups stratified by our method have clearly distinguishable outcome status as seen in their Kaplan-Meier curves. We also show that the idea of selecting only extreme patient samples for training is effective for improving the prediction accuracy when different gene selection methods are used.
17890414
Identifying significant genes from microarray data
Microarray technology is a recent development in experimental molecular biology which can produce quantitative expression measurements for thousands of genes in a single, cellular mRNA sample. These many gene expression measurements form a composite profile of the sample, which can be used to differentiate samples from different classes such as tissue types or treatments. However, for the gene expression profile data obtained in a specific comparison, most likely only some of the genes will, be differentially expressed between the classes, while many other genes have similar expression levels. Selecting a list of informative differential genes from these data is important for microarray data analysis. In this paper, we describe a framework for selecting informative genes, called ranking and combination analysis (RAC), which combines various existing informative gene selection methods. We conducted experiments using three data sets and six existing feature selection methods. The results show that the RAC framework is a robust and efficient approach to identify informative gene for microarray data. The combination approach on two selecting methods almost always performed better than the less efficient individual, and in many cases, better than both. More significantly, when considering all three data sets together, the combination approach, on average, outperforms each individual feature selection method. All of these indicate that RCA might be a viable and feasible approach for the microarray gene expression analysis.