6189075
NodeRank: A New Structure Based Approach to Information Filtering
43055665
Automatic Abstraction of Graphs Based on Node Similarity for Graph Visualization
17691685
WFMS-based Data Integration for e-Learning
As more and more organisations and institutions are moving towards the e-learning strategy, more and more disparate data are distributed by different e-learning systems. How to effectively use this vast amount of distributed data becomes a big challenge. This paper addresses this challenge and works out a new mechanism to implement data integration for e-learning. A workflow management system based (WFMS-based) data integration model is contributed to the e-learning
5703198
On the Structural Algorithm of Filtering Graphs for Layout
When the amount of information in visualization becomes large enough, users can not perceive all elements at the same time. This problem can be solved by removing parts of the information through the process of Filtering. In this paper, we present a novel method for filtering a graph by measuring the important role property of a node. The basic idea of this approach is to quantify the importance of a node as the degree to which it has direct and indirect relationships with the other nodes in a graph. All the nodes are ranked according to their Node Importance Scores, and those less important nodes and their associated edges are then removed or invisible. In comparison with the rule_based approach, our approach is a structure_based one that makes use of the linkage of nodes rather than their semantics. It can therefore be applied to filter any kinds of connected graphs. The examples and applications provided have demonstrated that our approach can effectively reduce the visual complexities.
16444798
Finding Similar Patterns in Microarray Data
In this paper we propose a clustering algorithm called s-Cluster for analysis of gene expression data based on pattern-similarity. The algorithm captures the tight clusters exhibiting strong similar expression patterns in Microarray data,and allows a high level of overlap among discovered clusters without completely grouping all genes like other algorithms. This reflects the biological fact that not all functions are turned on in an experiment, and that many genes are co-expressed in multiple groups in response to different stimuli. The experiments have demonstrated that the proposed algorithm successfully groups the genes with strong similar expression patterns and that the found clusters are interpretable.
8009887
A Framework of Filtering, Clustering and Dynamic Layout Graphs for Visualization
Many classical graph visualization algorithms have already been developed over the past decades. However, these algorithms face difficulties in practice, such as the overlapping node problem, large graph layout and dynamic graph layout. In order to solve these problems, this paper aims to systematically address algorithmic issues related to a novel framework that describes the process of graph visualization applications. First of all, a framework for graph visualization is described. As the important parts of this framework, we then develop two effective algorithms for filtering and clustering large graphs for the layouts. As for the dynamic graph layout, a new approach to removing overlapping nodes called force-transfer algorithm is developed. The framework has been implemented in a prototype called PGA to demonstrate the performance of the proposed algorithms. Finally, a case study is provided.
13555130
Deformable-Model Based Textured Object Segmentation
In this paper, we present a deformable-model based solution for segmenting objects with complex texture patterns of all scales. The external image forces in traditional deformable models come primarily from edges or gradient information and it becomes problematic when the object surfaces have complex large-scale texture patterns that generate many local edges within a same region. We introduce a new textured object segmentation algorithm that has both the robustness of model-based approaches and the ability to deal with non-uniform textures of both small and large scales. The main contributions include an information-theoretical approach for computing the natural scale of a “texon” based on model-interior texture, a nonparametric texture statistics comparison technique and the determination of object belongingness through belief propagation. Another important property of the proposed algorithm is in that the texture statistics of an object of interest are learned online from evolving model interiors, requiring no other a priori information. We demonstrate the potential of this model-based framework for texture learning and segmentation using both natural and medical images with various textures of all scales and patterns.
37155625
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment
Computational alignment of a biopolymer sequence (e.g., an RNA or a protein) to a structure is an effective approach to predict and search for the structure of new sequences. To identify the structure of remote homologs, the structure-sequence alignment has to consider not only sequence similarity but also spatially conserved conformations caused by residue interactions, and consequently is computationally intractable. It is difficult to cope with the inefficiency without compromising alignment accuracy, especially for structure search in genomes or large databases. This paper introduces a novel method and a parameterized algorithm for structure-sequence alignment. Both the structure and the sequence are represented as graphs, where in general the graph for a biopolymer structure has a naturally small tree width. The algorithm constructs an optimal alignment by finding in the sequence graph the maximum valued subgraph isomorphic to the structure graph. It has the computational time complexity O(k t N 2) for the structure of N residues and its tree decomposition of width t. The parameter k, small in nature, is determined by a statistical cutoff for the correspondence between the structure and the sequence. The paper demonstrates a successful application of the algorithm to developing a fast program for RNA structural homology search.
6321735
In-Route Skyline Querying for Location-Based Services
With the emergence of an infrastructure for location-aware mobile services, the processing of advanced, location-based queries that are expected to underlie such services is gaining in relevance. While much work has assumed that users move in Euclidean space, this paper assumes that movement is constrained to a road network and that points of interest can be reached via the network. More specifically, the paper assumes that the queries are issued by users moving along routes towards destinations. The paper defines in-route nearest-neighbor skyline queries in this setting and considers their efficient computation. The queries take into account several spatial preferences, and they intuitively return a set of most interesting results for each result returned by the corresponding non-skyline queries. The paper also covers a performance study of the proposed techniques based on real point-of-interest and road network data.
43590220
Lower Bounds and Parameterized Approach for Longest Common Subsequence
In this paper, different parameterized versions of the longest common subsequence (LCS) problem are extensively investigated and computational lower bound results are derived based on current research progress in parameterized computation. For example, with the number of sequences as the parameter k, the problem is unlikely to be solvable in time f(k)no(k), where n is the length of each sequence and f is any recursive function. The lower bound result is asymptotically tight in consideration of the dynamic programming approach of time O(nk). Computational lower bounds for polynomial-time approximation schemes (PTAS) for the LCS problem are also derived. It is shown that the LCS problem has no PTAS of time f(1/ e)no(1/ e) for any recursive function f, unless all SNP problems are solvable in subexponential time. Compared with former results on this problem, this result has its significance. Finally a parameterized approach for the LCS problem is discussed, which is more efficient than the dynamic programming approach, especially when applied to large scale sequences.
15814097
Language Independent Text Categorization
Text categorization is defined as the task of assigning pre-defined category labels to new documents. This paper proposes a language-independent text categorization model based on machine learning, and describes the feature extraction, classifier and evaluation method in detail. This model has been implemented on two news corpus of Chinese and Japanese and satisfactory categorization effectiveness has been achieved.