31949610
A barcode shape descriptor for curve point cloud data
In this paper, we present a complete computational pipeline for extracting a compact shape descriptor for curve point cloud data (PCD). Our shape descriptor, called a barcode, is based on a blend of techniques from differential geometry and algebraic topology. We also provide a metric over the space of barcodes, enabling fast comparison of PCDs for shape recognition and clustering. To demonstrate the feasibility of our approach, we implement our pipeline and provide experimental evidence in shape classification and parametrization.
13195342
Geometric filtering of pairwise atomic interactions applied to the design of efficient statistical potentials
Distance-dependent, pairwise, statistical potentials are based on the concept that the packing observed in known protein structures can be used as a reference for comparing different 3D models for a protein. Here, packing refers to the set of all pairs of atoms in the molecule. Among all methods developed to assess three-dimensional models, statistical potentials are subject both to praise for their power of discrimination, and to criticism for the weaknesses of their theoretical foundations. Classical derivations of pairwise potentials assume statistical independence of all pairs of atoms. This assumption, however, is not valid in general. We show that we can filter the list of all interactions in a protein to generate a much smaller subset of pairs that retains most of the structural information contained in proteins. The filter is based on a geometric method called alpha shapes that captures the packing in a conformation. Statistical scoring functions derived from such subsets perform as well as scoring functions derived from the set of all pairwise interactions.
10145935
Partial and approximate symmetry detection for 3D geometry
"Symmetry is a complexity-reducing concept [...]; seek it every-where." - Alan J. PerlisMany natural and man-made objects exhibit significant symmetries or contain repeated substructures. This paper presents a new algorithm that processes geometric models and efficiently discovers and extracts a compact representation of their Euclidean symmetries. These symmetries can be partial, approximate, or both. The method is based on matching simple local shape signatures in pairs and using these matches to accumulate evidence for symmetries in an appropriate transformation space. A clustering stage extracts potential significant symmetries of the object, followed by a verification step. Based on a statistical sampling analysis, we provide theoretical guarantees on the success rate of our algorithm. The extracted symmetry graph representation captures important high-level information about the structure of a geometric model which in turn enables a large set of further processing operations, including shape compression, segmentation, consistent editing, symmetrization, indexing for retrieval, etc.
34799453
Estimating surface normals in noisy point cloud data
In this paper we describe and analyze a method based on local least square fitting for estimating the normals at all sample points of a point cloud data (PCD) set, in the presence of noise. We study the effects of neighborhood size, curvature, sampling density, and noise on the normal estimation when the PCD is sampled from a smooth curve in ℝ2 or a smooth surface in ℝ3, and noise is added. The analysis allows us to find the optimal neighborhood size using other local information from the PCD. Experimental results are also provided.
8275001
Zonotopes as bounding volumes
Zonotopes are centrally symmetric polytopes with a very special structure: they are Minkowski sums of line segments. In this paper we propose to use zonotopes as bounding volumes for geometry in collision detection and other applications where the spatial relationship between two pieces of geometry is important. We show how to construct optimal, or approximately optimal zonotopes enclosing given set of points or other geometry. We also show how zonotopes can be used for efficient collision testing, based on their representation via their defining line segments --- without ever building their explicit description as polytopes. This implicit representation adds flexibility, power, and economy to the use of zonotopes as bounding volumes.
9789536
Robust global registration
We present an algorithm for the automatic alignment of two 3D shapes (data and model), without any assumptions about their initial positions. The algorithm computes for each surface point a descriptor based on local geometry that is robust to noise. A small number of feature points are automatically picked from the data shape according to the uniqueness of the descriptor value at the point. For each feature point on the data, we use the descriptor values of the model to find potential corresponding points. We then develop a fast branch-and-bound algorithm based on distance matrix comparisons to select the optimal correspondence set and bring the two shapes into a coarse alignment. The result of our alignment algorithm is used as the initialization to ICP (iterative closest point) and its variants for fine registration of the data to the model. Our algorithm can be used for matching shapes that overlap only over parts of their extent, for building models from partial range scans, as well as for simple symmetry detection, and for matching shapes undergoing articulated motion.
31972087
Sparse data aggregation in sensor networks