456712
Persistence barcodes for shapes
In this paper, we initiate a study of shape description and classification via the application of persistent homology to two tangential constructions on geometric objects. Our techniques combine the differentiating power of geometry with the classifying power of topology. The homology of our first construction, the tangent complex, can distinguish between topologically identical shapes with different "sharp" features, such as corners. To capture "soft" curvature-dependent features, we define a second complex, the filtered tangent complex, obtained by parametrizing a family of increasing subcomplexes of the tangent complex. Applying persistent homology, we obtain a shape descriptor, called a barcode, that is a finite union of intervals. We define a metric over the space of such intervals, arriving at a continuous invariant that reflects the geometric properties of shapes. We illustrate the power of our methods through a number of detailed studies of parametrized families of mathematical shapes.
13195342
Geometric filtering of pairwise atomic interactions applied to the design of efficient statistical potentials
Distance-dependent, pairwise, statistical potentials are based on the concept that the packing observed in known protein structures can be used as a reference for comparing different 3D models for a protein. Here, packing refers to the set of all pairs of atoms in the molecule. Among all methods developed to assess three-dimensional models, statistical potentials are subject both to praise for their power of discrimination, and to criticism for the weaknesses of their theoretical foundations. Classical derivations of pairwise potentials assume statistical independence of all pairs of atoms. This assumption, however, is not valid in general. We show that we can filter the list of all interactions in a protein to generate a much smaller subset of pairs that retains most of the structural information contained in proteins. The filter is based on a geometric method called alpha shapes that captures the packing in a conformation. Statistical scoring functions derived from such subsets perform as well as scoring functions derived from the set of all pairwise interactions.
31949610
A barcode shape descriptor for curve point cloud data
In this paper, we present a complete computational pipeline for extracting a compact shape descriptor for curve point cloud data (PCD). Our shape descriptor, called a barcode, is based on a blend of techniques from differential geometry and algebraic topology. We also provide a metric over the space of barcodes, enabling fast comparison of PCDs for shape recognition and clustering. To demonstrate the feasibility of our approach, we implement our pipeline and provide experimental evidence in shape classification and parametrization.
45865813
Persistence Barcodes for Shapes
In this paper, we initiate a study of shape description and classification via the application of persistent homology to tangential constructions on geometric objects. Our techniques combine the differentiating power of geometry with the classifying power of topology. The homology of our first construction, the tangent complex, can distinguish between topologically identical shapes with different "sharp" features, such as corners. To capture "soft" curvature-dependent features, we define a second complex, the filtered tangent complex, obtained by parameterizing a family of increasing subcomplexes of the tangent complex. Applying persistent homology, we obtain a shape descriptor, called a barcode, that is a finite union of intervals. We define a metric over the space of such intervals, arriving at a continuous invariant that reflects the geometric properties of shapes. We illustrate the power of our methods through a number of detailed studies of parameterized families of mathematical shapes.
72088
Collision detection for deforming necklaces
In this paper, we propose to study deformable necklaces --- flexible chains of balls, called beads, in which only adjacent balls may intersect. Such objects can be used to model macro-molecules, muscles, rope, and other 'linear' objects in the physical world. In this paper, we exploit this linearity to develop geometric structures associated with necklaces that are useful in physical simulations. We show how these structures can be implemented efficiently and maintained under necklace deformation. In particular, we study a bounding volume hierarchy based on spheres built on a necklace. Such a hierarchy is easy to compute and is suitable for maintenance when the necklace deforms, as our theoretical and experimental results show. This hierarchy can be used for collision and self-collision detection. In particular, we achieve an upper bound of O(nlog n) in two dimensions and O(n 2-2/d) in d-dimensions, d 3, for collision checking. To our knowledge, this is the first sub-quadratic bound proved for a collision detection algorithm using predefined hierarchies. In addition, we show that the power diagram, with the help of some additional mechanisms, can be also used to detect self-collisions of a necklace in certain ways complementary to the sphere hierarchy.
31972087
Sparse data aggregation in sensor networks
364731
Example-based 3D scan completion
We present a novel approach for obtaining a complete and consistent 3D model representation from incomplete surface scans, using a database of 3D shapes to provide geometric priors for regions of missing data. Our method retrieves suitable context models from the database, warps the retrieved models to conform with the input data, and consistently blends the warped models to obtain the final consolidated 3D shape. We define a shape matching penalty function and corresponding optimization scheme for computing the non-rigid alignment of the context models with the input data. This allows a quantitative evaluation and comparison of the quality of the shape extrapolation provided by each model. Our algorithms are explicitly designed to accommodate uncertain data and can thus be applied directly to raw scanner output. We show on a variety of real data sets how consistent models can be obtained from highly incomplete input. The information gained during the shape completion process can be utilized for future scans, thus continuously simplifying the creation of complex 3D models.
1377102
Meshless animation of fracturing solids
We present a new meshless animation framework for elastic and plastic materials that fracture. Central to our method is a highly dynamic surface and volume sampling method that supports arbitrary crack initiation, propagation, and termination, while avoiding many of the stability problems of traditional mesh-based techniques. We explicitly model advancing crack fronts and associated fracture surfaces embedded in the simulation volume. When cutting through the material, crack fronts directly affect the coupling between simulation nodes, requiring a dynamic adaptation of the nodal shape functions. We show how local visibility tests and dynamic caching lead to an efficient implementation of these effects based on point collocation. Complex fracture patterns of interacting and branching cracks are handled using a small set of topological operations for splitting, merging, and terminating crack fronts. This allows continuous propagation of cracks with highly detailed fracture surfaces, independent of the spatial resolution of the simulation nodes, and provides effective mechanisms for controlling fracture paths. We demonstrate our method for a wide range of materials, from stiff elastic to highly plastic objects that exhibit brittle and/or ductile fracture.
9789536
Robust global registration
We present an algorithm for the automatic alignment of two 3D shapes (data and model), without any assumptions about their initial positions. The algorithm computes for each surface point a descriptor based on local geometry that is robust to noise. A small number of feature points are automatically picked from the data shape according to the uniqueness of the descriptor value at the point. For each feature point on the data, we use the descriptor values of the model to find potential corresponding points. We then develop a fast branch-and-bound algorithm based on distance matrix comparisons to select the optimal correspondence set and bring the two shapes into a coarse alignment. The result of our alignment algorithm is used as the initialization to ICP (iterative closest point) and its variants for fine registration of the data to the model. Our algorithm can be used for matching shapes that overlap only over parts of their extent, for building models from partial range scans, as well as for simple symmetry detection, and for matching shapes undergoing articulated motion.