5775998
Identification of clusters in the Web graph based on link topology
The Web graph has recently been used to model the link structure of the Web. The studies of such graphs can yield valuable insights into Web algorithms for crawling, searching and discovery of Web communities. This paper proposes a new approach to clustering the Web graph. The proposed algorithm identifies a small subset of the graph as "core" members of clusters, and then incrementally constructs the clusters by a selection criterion. Two qualitative criteria are proposed to measure the quality of graph clustering. We have implemented our algorithm and tested a set of arbitrary graphs with good results. Applications of our approach include graph drawing and Web visualization.
16444798
Finding Similar Patterns in Microarray Data
In this paper we propose a clustering algorithm called s-Cluster for analysis of gene expression data based on pattern-similarity. The algorithm captures the tight clusters exhibiting strong similar expression patterns in Microarray data,and allows a high level of overlap among discovered clusters without completely grouping all genes like other algorithms. This reflects the biological fact that not all functions are turned on in an experiment, and that many genes are co-expressed in multiple groups in response to different stimuli. The experiments have demonstrated that the proposed algorithm successfully groups the genes with strong similar expression patterns and that the found clusters are interpretable.
8009887
A Framework of Filtering, Clustering and Dynamic Layout Graphs for Visualization
Many classical graph visualization algorithms have already been developed over the past decades. However, these algorithms face difficulties in practice, such as the overlapping node problem, large graph layout and dynamic graph layout. In order to solve these problems, this paper aims to systematically address algorithmic issues related to a novel framework that describes the process of graph visualization applications. First of all, a framework for graph visualization is described. As the important parts of this framework, we then develop two effective algorithms for filtering and clustering large graphs for the layouts. As for the dynamic graph layout, a new approach to removing overlapping nodes called force-transfer algorithm is developed. The framework has been implemented in a prototype called PGA to demonstrate the performance of the proposed algorithms. Finally, a case study is provided.
17691685
WFMS-based Data Integration for e-Learning
As more and more organisations and institutions are moving towards the e-learning strategy, more and more disparate data are distributed by different e-learning systems. How to effectively use this vast amount of distributed data becomes a big challenge. This paper addresses this challenge and works out a new mechanism to implement data integration for e-learning. A workflow management system based (WFMS-based) data integration model is contributed to the e-learning
43055665
Automatic Abstraction of Graphs Based on Node Similarity for Graph Visualization
6189075
NodeRank: A New Structure Based Approach to Information Filtering
28347745
On global sequence alignment
We present a dynamic programming algorithm for computing a best global alignment of two sequences. The proposed algorithm is robust in identifying any of several global relationships between two sequences. The algorithm delivers a best alignment of two sequences in linear space and quadratic time. We also describe a multiple alignment algorithm based on the pairwise algorithm. Both algorithms have been implemented as portable C programs. Experimental results indicate that for a commonly used set of gap penalties, the new programs produce more satisfactory alignments on sequences of various lengths than some existing pairwise and multiple programs based on the dynamic programming algorithm of Needleman and Wunsch.
41440512
Polynomial Time Approximation Schemes and Parameterized Complexity
7583168
Incremental Design Methodology for Multimillion-gate Fpgas
This paper presents an FPGA design methodology that can be used to shorten the FPGA design-and-debug cycle, especially as the gate counts increase to multimillions. Core-based incremental placement algorithms, in conjunction with fast interactive routing, are investigated to reduce the design processing time by distinguishing the changes between design iterations and reprocessing only the changed blocks without affecting the remaining part of the design. When combined with a background refinement thread, the incremental approach offers the instant gratification that designers expect, while preserving the fidelity attained through batch-oriented programs. An integrated FPGA design environment is then developed based on the incremental placer and its background refiner. The results show that the incremental design methodology is in orders of magnitude faster than the competing approaches such as the Xilinx M3 tools without sacrificing too much quality.
16726691
Objective and subjective algorithms for grouping association rules
We propose two algorithms for grouping and summarizing association rules. The first algorithm recursively groups rules according to the structure of the rules and generates a tree of clusters as a result. The second algorithm groups the rules according to the semantic distance between the rules by making use of an automatically tagged semantic tree-structured network of items. We provide a case study in which the proposed algorithms are evaluated. The results show that our grouping methods are effective and produce good grouping results.
42418095
An Improved ALOHA Algorithm for RFID Tag Identification
One of problems that we faced for Radio frequency identification (RFID) systems is that the collision between tags which lowers the efficiency of the RFID systems. One of the popular anti-collision algorithms is ALOHA-type algorithms, which are simple and have good performance when the number of tags to be read is reasonable small. In this paper, an enhanced dynamic framed slotted ALOHA algorithm for RFID is extended to a more general close form, hence reference [9] becomes only one special case described in our paper. The improved ALOHA algorithm for RFID tag identifications has much larger capacity to handle the cases when the tag numbers increasing largely while every frame keeping the optimum system efficiency 35.5%. Simulation results show that the proposed algorithm improves the efficiency nicely in comparison with the conventional algorithms keeping >80% as the previous paper shown.