2511396
An architecture for creating collaborative semantically capable scientific data sharing infrastructures
Increasingly, scientists are seeking to collaborate and share data among themselves. Such sharing is can be readily done by publishing data on the World-Wide Web. Meaningful querying and searching on such data depends upon the availability of accurate and adequate metadata that describes the data and the sources of the data. In this paper, we outline the architecture of an implemented cyber-infrastructure for chemistry that provides tools for users to upload datasets and their metadata to a database. Our proposal combines a two level metadata system with a centralized database repository and analysis tools to create an effective and capable data sharing infrastructure. Our infrastructure is extensible in that it can handle data in different formats and allows different analytic tools to be plugged in.
7844670
A sparse support vector machine approach to region-based image categorization
Automatic image categorization using low-level features is a challenging research topic in computer vision. In this paper, we formulate the image categorization problem as a multiple-instance learning (MIL) problem by viewing an image as a bag of instances, each corresponding to a region obtained from image segmentation. We propose a new solution to the resulting MIL problem. Unlike many existing MIL approaches that rely on the diverse density framework, our approach performs an effective feature mapping through a chosen metric distance function. Thus the MIL problem becomes solvable by a regular classification algorithm. Sparse SVM is adopted to dramatically reduce the regions that are needed to classify images. The selected regions by a sparse SVM approximate to the target concepts in the traditional diverse density framework. The proposed approach is a lot more efficient in computation and less sensitive to the class label uncertainty. Experimental results are included to demonstrate the effectiveness and robustness of the proposed method.
1791876
A Region-Based Fuzzy Feature Matching Approach to Content-Based Image Retrieval
This paper proposes a fuzzy logic approach, UFM (unified feature matching), for region-based image retrieval. In our retrieval system, an image is represented by a set of segmented regions, each of which is characterized by a fuzzy feature (fuzzy set) reflecting color, texture, and shape properties. As a result, an image is associated with a family of fuzzy features corresponding to regions. Fuzzy features naturally characterize the gradual transition between regions (blurry boundaries) within an image and incorporate the segmentation-related uncertainties into the retrieval algorithm. The resemblance of two images is then defined as the overall similarity between two families of fuzzy features and quantified by a similarity measure, UFM measure, which integrates properties of all the regions in the images. Compared with similarity measures based on individual regions and on all regions with crisp-valued feature representations, the UFM measure greatly reduces the influence of inaccurate segmentation and provides a very intuitive quantification. The UFM has been implemented as a part of our experimental SIMPLIcity image retrieval system. The performance of the system is illustrated using examples from an image database of about 60,000 general-purpose images.
10201400
RF/sup */IPF: a weighting scheme for multimedia information retrieval
The region-based approach has become a popular research trend in the field of multimedia database retrieval. We present the Region Frequency and Inverse Picture Frequency (RF/sup */IPF) weighting, a measure developed to unify region-based multimedia retrieval systems with text-based information retrieval systems. The weighting measure gives the highest weight to regions that occur often in a small number of images in the database. These regions are considered discriminators. With this weighting measure, we can blend image retrieval techniques with TF/sup */IDF-based text retrieval techniques for large-scale Web applications. The RF/sup */IPF weighting has been implemented as a part of our experimental SIMPLIcity image retrieval system and tested on a database of about 200000 general-purpose images. Experiments have shown that this technique is effective in discriminating images of different semantics. Additionally, the overall similarity approach enables a simple querying interface for multimedia information retrieval systems.
4227250
Content-based image retrieval by clustering
In a typical content-based image retrieval (CBIR) system, query results are a set of images sorted by feature similarities with respect to the query. However, images with high feature similarities to the query may be very different from the query in terms of semantics. This is known as the semantic gap. We introduce a novel image retrieval scheme, CLUster-based rEtrieval of images by unsupervised learning (CLUE), which tackles the semantic gap problem based on a hypothesis: semantically similar images tend to be clustered in some feature space. CLUE attempts to capture semantic concepts by learning the way that images of the same semantics are similar and retrieving image clusters instead of a set of ordered images. Clustering in CLUE is dynamic. In particular, clusters formed depend on which images are retrieved in response to the query. Therefore, the clusters give the algorithm as well as the users semantic relevant clues as to where to navigate. CLUE is a general approach that can be combined with any real-valued symmetric similarity measure (metric or nonmetric). Thus it may be embedded in many current CBIR systems. Experimental results based on a database of about 60, 000 images from COREL demonstrate improved performance.
735304
PARAgrab: a comprehensive architecture for web image management and multimodal querying
We demonstrate PARAgrab - a scalable Web image archival, retrieval, and annotation system that supports multiple querying modalities. The underlying architecture of our large-scale Web image database is described. Querying and visualization techniques used in the system are explained.
10320126
Resolving the unencoded character problem for chinese digital libraries
Constructing a Chinese digital library, especially for historical article archiving, is often hindered by the small character sets supported by current computer systems. This paper is aimed at resolving the unencoded character problem with a practical and composite approach for Chinese digital libraries. The proposed approach consists of the glyph expression model, glyph structure database, and supporting tools. With this approach, the following problems can be resolved. First, the extensibility of Chinese characters can be preserved. Second, it would be as easy to generate, input, display, and search unencoded characters as existing ones. Third, it is compatible with existing encoding schemes that most computers use. This approach has been utilized by organizations and projects in various application domains including archeology, linguistics, ancient texts, calligraphy and paintings, and stone and bronze rubbings. For example, in Academia Sinica, a very large full-text database of ancient texts called Scripta Sinica has been created using this approach. The Union Catalog of National Digital Archives Project (NDAP) dealt with the unencoded characters encountered when merging the metadata of 12 different thematic domains from various organizations. Also, in Bronze Inscriptions Research Team (BIRT) of Academia Sinica, 3,459 bronze inscriptions were added, which is very helpful to the education and research in historic linguistics
6185794
Cross-layer optimization in TCP/IP networks
TCP-AQM can be interpreted as distributed primal-dual algorithms to maximize aggregate utility over source rates. We show that an equilibrium of TCP/IP, if exists, maximizes aggregate utility over both source rates and routes, provided congestion prices are used as link costs. An equilibrium exists if and only if this utility maximization problem and its Lagrangian dual have no duality gap. In this case, TCP/IP incurs no penalty in not splitting traffic across multiple paths. Such an equilibrium, however, can be unstable. It can be stabilized by adding a static component to link cost, but at the expense of a reduced utility in equilibrium. If link capacities are optimally provisioned, however, pure static routing, which is necessarily stable, is sufficient to maximize utility. Moreover single-path routing again achieves the same utility as multipath routing at optimality.
17750098
Lineage Path Integration for Phylogenetic Resources
With the increase of genome and proteome data, phylogenetic information and phylogenetic analysis tools are increasing greatly in current biological repositories. First, many repositories allow users to browse information about species through taxonomic tools. These tools present the species with its lineage path and links to the various types of information the repository provides about the species. Second, some multiple sequence alignment tools offer users basic phylogenetic data through applying basic reconstruction algorithms to the alignment. With the availability of this information in multiple locations, integrated tools are needed to allow the user to compare this data. This paper presents data integration research on lineage paths using the BIO-AJAX framework. It introduces BIO-AJAX for Lineage Paths, a tool that integrates lineage path information for NCBI Taxonomy Database [1] and the Integrated Taxonomic Information System (ITIS)[6].
14858727
BIO-AJAX: an extensible framework for biological data cleaning
As databases become more pervasive through the biological sciences, various data quality issues regarding data legacy, data uniformity and data duplication arise. Due to the nature of this data, each of these problems is non-trivial. For biological data to be corrected and standardized, new methods and frameworks must be developed. This paper proposes one such framework, called BIO-AJAX, which uses principles from data cleaning to improve data quality in biological information systems, specifically in TreeBASE.
11616193
Automatic Hierarchical Classification of Structured Deep Web Databases
We present a method that automatically classifies structured deep Web databases according to a pre-defined topic hierarchy. We assume that there are some manually classified databases, i.e., training databases, in every node of the topic hierarchy. Each training database is probed using queries constructed from the node titles of the topic hierarchy and the query result counts reported by the database are used to represent the content of the database. Hence, when adding a new database it can be probed by the same set of queries and classified to a node whose training databases are most similar to the new one. Specifically, a support vector machine classifier is trained on each internal node of the topic hierarchy with these training databases and the new database can be classified into the hierarchy top-down level by level. A feature extension method is proposed to create discriminant features. Experiments run on real structured Web databases collected from the Internet show that this classification method is quite accurate.