22852167
Parallel Random Tunneling Algorithm for Structural Optimization of Lennard-Jones Clusters up to N = 330
A random tunneling algorithm (RTA) is derived from the terminal repeller unconstrained subenergy tunneling (TRUST) algorithm, and the parallelization of the RTA is implemented with an island parallel paradigm. Combined with the techniques of angular moving, the parallel random tunneling algorithm (PRTA) is applied to the optimization of Lennard-Jones (LJ) atomic clusters, and all the global minima of LJ clusters with size up to 200 are successfully located. For the optimization of larger cluster, a PRTA with an improved seeding technique is developed and successfully applied to the optimization of LJ151-LJ309. Furthermore, the optimized structures of LJ309-330 with the PRTA, which have not been studied before, are also provided.
19285635
Global Optimization of Lennard-Jones Clusters by a Parallel Fast Annealing Evolutionary Algorithm
A parallel fast annealing evolutionary algorithm (PFAEA) was presented and applied to optimize Lennard-Jones (LJ) clusters. All the lowest known minima up to LJ(116) with both icosahedral and nonicosahedral structure, including the truncated octahedron of LJ(38), central fcc tetrahedron of LJ(98), the Marks' decahedron of LJ(75)(-)(77), and LJ(102)(-)(104), were located successfully by the unbiased algorithm. PFAEA is a parallel version of fast annealing evolutionary algorithm (FAEA) that combines the aspect of population in genetic algorithm and annealing algorithm with a very fast annealing schedule. A master-slave paradigm is used to parallelize FAEA to improve the efficiency. The performance of PFAEA is studied, and the scaling of execution time with the cluster size is approximately cubic, which is important for larger scale energy minimization systems.
26735928
I/O Response Time in a Fault-Tolerant Parallel Virtual File System
A fault tolerant parallel virtual file system is designed and implemented to provide high I/O performance and high reliability. A queuing model is used to analyze in detail the average response time when multiple clients access the system. The results show that I/O response time is with a function of several operational parameters. It decreases with the increase in I/O buffer hit rate for read requests, write buffer size for write requests and number of server nodes in the parallel file system, while higher I/O requests arrival rate increases I/O response time.
20921565
Dynamical Process of Excitation Fusion in Polymers
Due to the confinement effect in the nondegenerate polymers and the electron-lattice interaction, the electron-hole pair forms a self-trapped single excitation. It is shown that two single excitations in one chain can fuse into one double excitation, and the relaxation time of the fusion process is about 160 fs.
206799544
A continuation method for (strongly) monotone variational inequalities
We consider the variational inequality problem, denoted by VIP(X, F), whereF is a strongly monotone function and the convex setX is described by some inequality (and possibly equality) constraints. This problem is solved by a continuation (or interior-point) method, which solves a sequence of certain perturbed variational inequality problems. These perturbed problems depend on a parameterμ > 0. It is shown that the perturbed problems have a unique solution for all values ofμ > 0, and that any sequence generated by the continuation method converges to the unique solution of VIP(X,F) under a well-known linear independence constraint qualification (LICQ). We also discuss the extension of the continuation method to monotone variational inequalities and present some numerical results obtained with a suitable implementation of this method. © 1998 The Mathematical Programming Society, Inc. Published by Elsevier Science B.V.
179733
Exploiting redundancy to boost performance in a RAID-10 style cluster-based file system
While aggregating the throughput of existing disks on cluster nodes is a cost-effective approach to alleviate the I/O bottleneck in cluster computing, this approach suffers from potential performance degradations due to contentions for shared resources on the same node between storage data processing and user task computation. This paper proposes to judiciously utilize the storage redundancy in the form of mirroring existed in a RAID-10 style file system to alleviate this performance degradation. More specifically, a heuristic scheduling algorithm is developed, motivated from the observations of a simple cluster configuration, to spatially schedule write operations on the nodes with less load among each mirroring pair. The duplication of modified data to the mirroring nodes is performed asynchronously in the background. The read performance is improved by two techniques: doubling the degree of parallelism and hot-spot skipping. A synthetic benchmark is used to evaluate these algorithms in a real cluster environment and the proposed algorithms are shown to be very effective in performance enhancement.
2506576
A Compiler-Directed Approach to Network Latency Reduction for Distributed Shared Memory Multiprocessors
In distributed shared memory multiprocessor systems, parallel tasks communicate through sharing memory data. As the system size increases, such communication cost becomes the main factor that limits the overall parallelism and performance. In this paper, we propose a new solution to the problem through judiciously managing the relevant resource, namely, the shared data and the interconnection network (IN) through which the sharing is carried out. In this approach, communication cost is minimized by means of data migration/allocation which is based on analyzing general layered task graphs, sharing behavior of parallel tasks, and network topology. Our method is not applicable for read only variables. Further, for the time being, the usefulness of the method is limited to multiprocessors where no cache coherence mechanism is implemented. Four typical interconnection topologies for multiprocessors are considered, namely, shared-bus, hierarchical-bus, 2-D mesh, and fat-tree structures. Efficient data allocation algorithms for each of the four network topologies are developed that make decision on data allocation/migration at the compile time. The complexity of one algorithm isO(np) for shared-bus andO(n2p) for the remaining three in a system withnprocessors executing ap-layer task graph for one shared variable. We have also given an algorithm to determine optimal allocation/migration scheme for multiple shared variables. However, the cost of the algorithm become prohibitive when the number of shared variables is high. Therefore, a heuristic of low complexity is suggested. The heuristic is optimal for some topologies.