38935360
Analyzing Metadata Performance in Distributed File Systems
The performance of metadata processing in large distributed file systems currently presents larger challenges than scaling of data throughput. The paper presents a novel, distributed benchmark called DMetabench for measuring the performance of metadata operations (e.g. file creation). DMetabench runs in environments with potentially thousands of nodes and allows an assessment of the scalability of metadata operations. Additionally, precise run-time performance data is preserved which allows for a better understanding of performance artifacts. Validation results from production file systems at the Leibniz Supercomputing Centre (LRZ) are provided and discussed. Possible applications of knowledge about metadata performance scaling include the choice of an optimal parallelization strategy for metadata-itensive workload in a specific runtime environment.
32469612
Editorial for the ISC’10 Scientific Sessions Proceedings
The International Supercomputing Conference started in 1986 as the “Supercomputer Seminar” organized by Prof. Hans Meuer, then director of the computer center and professor for computer science at the Universitat Mannheim (Germany). Since these early days the annual conference became a major international event in the HPC community. As the conference grew bigger, it moved from Mannheim over Heidelberg and Dresden to Hamburg. In 2010 the conference will celebrate its 25th birthday! About 2,000 attendees and more than 140 exhibitors from over 45 countries are expected to attend, turning ISC’10 into a powerful and memorable event. Over the years we decided to strengthen the scientific part of the conference and present selected talks on relevant research results in the field of HPC. These scientific sessions started in 2007 as a separate day preceding the conference. Slides and accompanying papers were made available via the conference web site. Now, the scientific sessions evolved into an integral part of the conference, being scheduled in the afternoon of the first day. The call for participation was issued in winter 2009 inviting researchers and developers to submit latest results of their work as full research papers to the program committee of the scientific sessions. Altogether we received 25 submissions from authors all over the world. In a peer-reviewing process with an international committee we selected the best 13 papers for publication in this journal and for presentation during the scientific sessions of the conference.
46353828
DAxML: A Program for Distributed Computation of Phylogenetic Trees Based on Load Managed CORBA
High performance computing in bioinformatics has led to important progress in the field of genome analysis. Due to the huge amount of data and the complexity of the underlying algorithms many problems can only be solved by using supercomputers. In this paper we present DAxML, a program for the distributed computation of evolutionary trees. In contrast to prior approaches DAxML runs on a cluster of workstations instead of an expensive supercomputer. For this purpose we transformed PAxML, a fast parallel phylogeny program incorporating novel algorithmic optimizations, into a distributed application. DAxML uses modern object-oriented middleware instead of message-passing communication in order to reduce the development and maintenance costs. Our goal is to provide DAxML to a broad range of users, in particular those who do not have supercomputers at their disposal. We ensure high performance and scalability by applying a high-level load management service called LMC (Load Managed CORBA). LMC provides transparent system level load management by integrating the load management functionality directly into the ORB. In this paper we demonstrate the simplicity of integrating LMC into a real-world application and how it enhances the performance and scalability of DAxML.
32939660
Bottleneck Detection in Parallel File Systems with Trace-Based Performance Monitoring
Today we recognize a high demand for powerful storage. In industry this issue is tackled either with large storage area networks, or by deploying parallel file systems on top of RAID systems or on smaller storage networks. The bigger the system gets the more important is the ability to analyze the performance and to identify bottlenecks in the architecture and the applications. 
 
We extended the performance monitor available in the parallel file system PVFS2 by including statistics of the server process and information of the system. Performance monitor data is available during runtime and the server process was modified to store this data in off-line traces suitable for post-mortem analysis. These values can be used to detect bottlenecks in the system. Some measured results demonstrate how these help to identify bottlenecks and may assists to rank the servers depending on their capabilities.
15426077
Analysis of the MPI-IO Optimization Levels with the PIOViz Jumpshot Enhancement
With MPI-IO we see various alternatives for programming file I/O. The overall program performance depends on many different factors. A new trace analysis environment provides deeper insight into the client/server behavior and visualizes events of both process types. We investigate the influence of making independent vs. collective calls together with access to contiguous and non-contiguous data regions in our MPI-IO program. Combined client and server traces exhibit reasons for observed I/O performance.
32110636
Power-delay product minimization in high-performance 64-bit carry-select adders
This paper analyzes methods to minimize the power-delay product of 64-bit carry-select adders intended for high-performance and low-power applications. A first realization in 0.18-/spl mu/m partially depleted (PD) silicon-on-insulator (SOI), using complex branch-based logic (BBL) cells, results in a delay of 720 ps and a power dissipation of 96 mW at 1.5 V. The reduction of the stack height in the critical path, combined with the optimization of the global carry network with cell sharing and the selection of 8-bit pre-sums, leads to a reduction of the power-delay product by 75%. The automatic tuning of the transistor widths in 0.13-/spl mu/m PD SOI produces an energy-efficient 64-bit adder which has a delay of 326 ps and a power dissipation of 23 mW only at 1.1 V.
1607388
Performance Evaluation of the PVFS2 Architecture
As the complexity of parallel file systems' software stacks increases it gets harder to reveal the reasons for performance bottlenecks in these software layers. This paper introduces a method which eliminates the influence of the physical storage on performance analysis in order to find these bottlenecks. Also, the influence of the hardware components on the performance is modeled to estimate the maximum achievable performance of a parallel file system. The paper focuses on the parallel virtual file system 2 (PVFS2) and shows results for the functionality file creation, small contiguous I/O requests and large contiguous I/O requests