jessica claire montgomery street san francisco ca 94105 555 4321000 resumesampleexamplecom summary graduate student university california irvine scientific background computational biology pharmaceutical science interested computational approaches pharmaceutical therapeuticsbased research expertise computational multiomics machine learning drug design platforms skills programming skills r intermediate python basic shell bash scripting basic os platform linux window os cluster distributed computing hpc ngs data processing bulk rna seq atacseq database experience gene expression omnibus geo sequence read archive sra single cell expression atlas sequencing alignment sra toolkit bedtools bowtie2 star picard tools samtools sequencing quantification macs2 featurecounts kallisto tximport rnanorm differential expression pathway enrichment ontology analysis edger deseq2 gprofiler2 homer david ingenuity pathway analysis ipa experience data science intern 012023 current covance baltimore md multiomic data integration paired expression chromatin accessibility peca multiomics factor analysis mofa network biology transcription factortarget gene interaction network cytoscape ipa centrality calculation cytohubba data visualization chipseekerr cytoscape integrative genomics viewer igv adobe illustrator machine learning data curation feature selection model building hyperparameter optimization regression classification models neural network random forest xgboost models pythonskitlearn tensorflow keras pytorch development machine learning models predict pharmacokinetic quantum mechanical properties molecules using accelerating therapeutics medicine model learning pipeline ampl experience generative molecular design model testing validation phd graduate 092017 current cenergy freeport ny utilized machine learning analysis multiomic data integration identify key regulatory network changes stem cell reprogramming gained expertise transcriptional epigenetic data processing analysis methods implemented network theory centrality calculations identify impediments reprogramming efficiency became proficient using stem cell models drug characterization mechanistic understanding effects pharmaceutical agents communicated research results conference presentations departmental research presentations scientific publications supported department faculty administrative assistance well curriculum research support teaching assistant upper division course stem cell biology regenerative medicine served mentor high school undergraduate students youth research summer science program women stemwistem girls engineering change gec outreach board leader rladies irvine chapter research technician 082016 062017 childrens hospital philadelphia city state developed autoimmune disease models using crisprcas9 system acquired computational skills sequencing genomic data education training phd biological chemistry computational biology 092023 university california irvine irvine ca thesis investigating mechanism cellular reprogramming bachelor arts biology 052016 bryn mawr college bryn mawr pa study abroad program chemistry medicine 062015 kings college london united kingdom publications 1 jessica claire trina nordenkrichmar network analysis across cellular reprogramming states american society human genetics ashg conference 2022 2 richard c chang jessica claire erika joloya angela kuo zhuorui li bruce blumberg cannabidiol promotes adipogenesis human mouse mesenchymal stem cells via ppary inducing lipogenesis lipolysis biochemical pharmacology 2022 3 jessica claire trina nordenkrichmar investigating conservation chromatin accessibility signatures ipsc reprogramming across human mouse atacseq data american society human genetics ashg conference 2021 4 jessica claire trina nordenkrichmar metaanalysis atacseq data explore chromatin accessibility ipsc reprogramming american society human genetics ashg conference 2020 5 jessica claire gregory k davis patterns torsolike activated map kinase oviparous development pea aphid 18th annual undergraduate research symposium chemical biological sciences 2015 awards national science foundation graduate research fellowship award september 2018september 2022 university california irvine division teaching excellence innovation pedagogy fellowship summer quarter 2022 university california irvine graduate division completion fellowship fall quarter 2022 national science foundation intern supplemental award january 2023june 2023