plastiC: A pipeline for recovery and characterization of plastid genomes from metagenomic datasets

Summary Most metagenomic workflows have been developed for identification of prokaryotic and eukaryotic community constituents, but tools for identification of plastid genomes are lacking. plastiC is a workflow that allows users to identify plastid genomes in metagenome assemblies, assess completeness, and predict taxonomic association from diverse environmental sources. Availability and Implementation plastiC is a Snakemake workflow available at https://github.com/Finn-Lab/plastiC. Supplementary information Supplementary information available online.