code: public void setStructure(Structure s) {
  
  		if (jmolPanel == null){
  			logger.error("please install Jmol first");
  			return;
  		}
  		setTitle(s.getPDBCode());
  		jmolPanel.setStructure(s);
  
  		// actually this is very simple
  		// just convert the structure to a PDB file
  
  		//String pdb = s.toPDB();
  		//System.out.println(s.isNmr());
  
  		//System.out.println(pdb);
  		// Jmol could also read the file directly from your file system
  		//viewer.openFile("/Path/To/PDB/1tim.pdb");
  
  		//System.out.println(pdb);
  		//jmolPanel.openStringInline(pdb);
  
  		// send the PDB file to Jmol.
  		// there are also other ways to interact with Jmol,
  		// e.g make it directly
  		// access the biojava structure object, but they require more
  		// code. See the SPICE code repository for how to do this.
  
  		structure = s;
  	}
docs: Set a new Structure to visualize in the AlignmentJmol window.
  @param s