code: public static void updateSymmetryScores(MultipleAlignment symm)
  			throws StructureException {
  
  		// Multiply by the order of symmetry to normalize score
  		double tmScore = MultipleAlignmentScorer.getAvgTMScore(symm)
  				* symm.size();
  		double rmsd = MultipleAlignmentScorer.getRMSD(symm);
  
  		symm.putScore(MultipleAlignmentScorer.AVGTM_SCORE, tmScore);
  		symm.putScore(MultipleAlignmentScorer.RMSD, rmsd);
  	}
docs: Update the scores (TM-score and RMSD) of a symmetry multiple alignment.
  This method does not redo the superposition of the alignment.
  
  @param symm
  Symmetry Multiple Alignment of Repeats
  @throws StructureException