code: public static List<SecStrucState> parseString(String dsspOut,
  			Structure structure, boolean assign)
  					throws IOException, StructureException {
  
  		Reader read = new StringReader(dsspOut);
  		BufferedReader reader = new BufferedReader(read);
  		return generalParse(reader, structure, assign);
  	}
docs: Parse a DSSP format String and return the secondary structure
  annotation as a List of {@link SecStrucState} objects.
  
  @param dsspOut String with the DSSP output to parse
  @param structure Structure object associated to the dssp
  @param assign assigns the SS to the structure if true
  @return a List of SS annotation objects
  @throws StructureException
  @throws IOException