code: public Blacklist generateBlacklist(Model model)
  	{
  		Blacklist blacklist = new Blacklist();
  
  		// populate the blacklist
  
  		for (SmallMoleculeReference smr : model.getObjects(SmallMoleculeReference.class))
  		{
  			String name = smr.getDisplayName();
  			if (name == null) continue;
  			name = name.toLowerCase();
  
  			if (knownNames.containsKey(name))
  			{
  				blacklist.addEntry(smr.getUri(), 1, knownNames.get(name));
  
  				for (SimplePhysicalEntity spe : smr.getEntityReferenceOf())
  				{
  					blacklist.addEntry(spe.getUri(), 1, knownNames.get(name));
  				}
  			}
  		}
  
  		return blacklist;
  	}
docs: Generates the blacklist.
  @param model model to use
  @return the blacklist