code: def run(args):
      
      dirs, config, run_info_yaml = run_info.prep_system(args.sample_config, args.systemconfig)
      integrations = args.integrations if hasattr(args, "integrations") else {}
      world = run_info.organize(dirs, config, run_info_yaml, is_cwl=True, integrations=integrations)
      create.from_world(world, run_info_yaml, integrations=integrations, add_container_tag=args.add_container_tag)
docs: Run a CWL preparation pipeline.