code: def _finalize_sv(solution_file, data):
      
      out = {"variantcaller": "titancna"}
      with open(solution_file) as in_handle:
          solution = dict(zip(in_handle.readline().strip("\r\n").split("\t"),
                              in_handle.readline().strip("\r\n").split("\t")))
      if solution.get("path"):
          out["purity"] = solution["purity"]
          out["ploidy"] = solution["ploidy"]
          out["cellular_prevalence"] = [x.strip() for x in solution["cellPrev"].split(",")]
          base = os.path.basename(solution["path"])
          out["plot"] = dict([(n, solution["path"] + ext) for (n, ext) in [("rplots", ".Rplots.pdf"),
                                                                           ("cf", "/%s_CF.pdf" % base),
                                                                           ("cna", "/%s_CNA.pdf" % base),
                                                                           ("loh", "/%s_LOH.pdf" % base)]
                              if os.path.exists(solution["path"] + ext)])
          out["subclones"] = "%s.segs.txt" % solution["path"]
          out["hetsummary"] = solution_file
          out["vrn_file"] = to_vcf(out["subclones"], "TitanCNA", _get_header, _seg_to_vcf, data)
          out["lohsummary"] = loh.summary_status(out, data)
      return out
docs: Add output files from TitanCNA calling optional solution.