code: public static void convert(SequenceRecordReader reader, SequenceRecordWriter writer) throws IOException {
          convert(reader, writer, true);
      }
docs: Write all sequences from the specified sequence record reader to the specified sequence record writer.
  Closes the sequence record writer on completion.
  
  @param reader Sequence record reader (source of data)
  @param writer Sequence record writer (location to write data)
  @throws IOException If underlying reader/writer throws an exception