code: private int clearGeometryIndices() {
  		int deleted = 0;
  		DeleteBuilder<GeometryIndex, GeometryIndexKey> db = geometryIndexDao
  				.deleteBuilder();
  		try {
  			db.where().eq(GeometryIndex.COLUMN_TABLE_NAME, tableName);
  			PreparedDelete<GeometryIndex> deleteQuery = db.prepare();
  			deleted = geometryIndexDao.delete(deleteQuery);
  		} catch (SQLException e) {
  			throw new GeoPackageException(
  					"Failed to clear Geometry Index rows for GeoPackage: "
  							+ geoPackage.getName() + ", Table Name: "
  							+ tableName + ", Column Name: " + columnName, e);
  		}
  
  		return deleted;
  	}
docs: Clear the Geometry Indices for the table name
  
  @return number of rows deleted