code: def main():
      
      # Define Parser object and add to toil
      parser = build_parser()
      Job.Runner.addToilOptions(parser)
      args = parser.parse_args()
      # Store inputs from argparse
      inputs = {'config': args.config,
                'config_fastq': args.config_fastq,
                'input': args.input,
                'unc.bed': args.unc,
                'hg19.transcripts.fa': args.fasta,
                'composite_exons.bed': args.composite_exons,
                'normalize.pl': args.normalize,
                'output_dir': args.output_dir,
                'rsem_ref.zip': args.rsem_ref,
                'chromosomes.zip': args.chromosomes,
                'ebwt.zip': args.ebwt,
                'ssec': args.ssec,
                's3_dir': args.s3_dir,
                'sudo': args.sudo,
                'single_end_reads': args.single_end_reads,
                'upload_bam_to_s3': args.upload_bam_to_s3,
                'uuid': None,
                'sample.tar': None,
                'cpu_count': None}
  
      # Launch jobs
      Job.Runner.startToil(Job.wrapJobFn(download_shared_files, inputs), args)
docs: This is a Toil pipeline for the UNC best practice RNA-Seq analysis.
      RNA-seq fastqs are combined, aligned, sorted, filtered, and quantified.
  
      Please read the README.md located in the same directory.