code: def main(self):
          
          logging.info('Starting {} analysis pipeline'.format(self.analysistype))
          self.createobjects()
          # Run the genesipping analyses
          self.methods()
          # Determine if the analyses are complete
          self.complete()
          self.additionalsipping()
          # Update the report object
          self.reports = Reports(self)
          # Once all the analyses are complete, create reports for each sample
          Reports.methodreporter(self.reports)
          # Print the metadata
          printer = MetadataPrinter(self)
          printer.printmetadata()
docs: Run the analyses using the inputted values for forward and reverse read length. However, if not all strains
          pass the quality thresholds, continue to periodically run the analyses on these incomplete strains until either
          all strains are complete, or the sequencing run is finished