code: def run_dependent_peptides_from_parameters(paramfile, outfile):
      
      parameters = parse_parameters(paramfile)
      allPeptides_file = fileParam(parameters, 'allPeptides.txt')
      rawFilesTable_file = fileParam(parameters, 'Raw files table')
      run_dependent_peptides(allPeptides_file, rawFilesTable_file, outfile)
docs: transform a allPeptides.txt and experimentalDesign.txt table
      into the dependentPeptides.txt table written in outfile.
      :param paramfile: Perseus parameters.xml including at least two FileParam
      entries names 'allPeptides.txt' and 'experimentalDesign.txt'.
      :param outfile: Path to the output file.