code: def extract_hit_list_from_hmmsearch_results(self):
  
          '''
          Make a giant list of all the hit objects from
          our search
          '''
  
          combined_list_of_hits = []
  
          for result in self.hmm_result_list:
              fullpath = self.hhsearch_result_folder + result
              
  
              se = SearchIO.read(fullpath, 'hmmer3-text')
  
              sublist = []
              for hit in se:
                  combined_list_of_hits.append(hit)
                  sublist.append(hit.id)
              print 'extracted', str(len(sublist)), 'hits for', result
              
          return combined_list_of_hitf extract_hit_list_from_hmmsearch_results(self):
  
          '''
          Make a giant list of all the hit objects from
          our search
          '''
  
          combined_list_of_hits = []
  
          for result in self.hmm_result_list:
              fullpath = self.hhsearch_result_folder + result
              
  
              se = SearchIO.read(fullpath, 'hmmer3-text')
  
              sublist = []
              for hit in se:
                  combined_list_of_hits.append(hit)
                  sublist.append(hit.id)
              print 'extracted', str(len(sublist)), 'hits for', result
              
          return combined_list_of_hits
docs: Make a giant list of all the hit objects from
          our search