docs: public void run(String[] args) {
      LOG.info("Starting GA4GHPicardRunner");
      try {
        parseCmdLine(args);
        buildPicardCommand();
        startProcess();
        pumpInputData();
        waitForProcessEnd();
      } catch (Exception e) {
        System.out.println(e.getMessage());
        e.printStackTrace();
      }
    }