docs: def get_profiles(adapter, vcf_file):
  
      """Given a vcf, get a profile string for each sample in the vcf
      based on the profile variants in the database
  
      Args:
          adapter(MongoAdapter): Adapter to mongodb
          vcf_file(str): Path to vcf file
  
      Returns:
          profiles (dict(str)): The profiles (given as strings) for each sample
                                in vcf.
  
      """
      vcf = get_file_handle(vcf_file)
      individuals = vcf.samples
      profiles = {individual: [] for individual in individuals}
  
      for profile_variant in adapter.profile_variants():
  
          ref = profile_variant['ref']
          alt = profile_variant['alt']
  
          pos = profile_variant['pos']
          end = pos + 1
          chrom = profile_variant['chrom']
  
          region = f"{chrom}:{pos}-{end}"
  
          #Find variants in region
  
          found_variant = False
          for variant in vcf(region):
  
              variant_id = get_variant_id(variant)
  
              #If variant id i.e. chrom_pos_ref_alt matches
              if variant_id == profile_variant['_id']:
                  found_variant = True
                  #find genotype for each individual in vcf
                  for i, individual in enumerate(individuals):
  
                      genotype = GENOTYPE_MAP[variant.gt_types[i]]
                      if genotype == 'hom_alt':
                          gt_str = f"{alt}{alt}"
                      elif genotype == 'het':
                          gt_str = f"{ref}{alt}"
                      else:
                          gt_str = f"{ref}{ref}"
  
                      #Append genotype to profile string of individual
                      profiles[individual].append(gt_str)
  
                  #Break loop if variant is found in region
                  break
  
          #If no call was found for variant, give all samples a hom ref genotype
          if not found_variant:
              for individual in individuals: profiles[individual].append(f"{ref}{ref}")
  
  
      return profiles