Kammala jumla mai zuwa: A ranar 4 ga Maris, 2017, Aubameyang ya wuce kwallaye 20 na Bundesliga a karo na biyu a jere tare da kwallaye biyu a nasarar da Bayer Leverkusen ya ci 6-2. Kwana hudu bayan haka, ya zira kwallaye uku a wasan da suka yi nasara da Benfica da ci 4-0 don sanya Dortmund a wasan kusa da na kusa da na karshe na gasar zakarun Turai. A ranar 20 ga Mayu, Aubameyang ya zira kwallaye biyu a wasan karshe da Borussia ta doke Werder Bremen don kawo karshen kakar wasa a matsayin dan wasan Bundesliga da ya zira kwallaye 31. A cikin
a wasan karshe na 2016-17 DFB-Pokal a ranar 27 ga Mayu 2017 ya zira kwallaye mai cin nasara, bugun fanareti, yayin da Dortmund ta doke Eintracht Frankfurt 2-1.