Pedzisa mutsara unotevera: Muna 2016, Bagnaia akatanga mwaka nepodiyamu paLosail uye imwe podium paJerez, achipedza 3rd pazviitiko zvose. Mumakwikwi ake epamba muItaly, Bagnaia akawana imwe nzvimbo yechitatu achirova Niccolò Antonelli nemasekondi 0.006. Achiteverwa nokudonha muBarcelona, Bagnaia akawana kukunda kwake kwokutanga muGrand Prix munhoroondo
Assen circuit mumujaho wake wechi59 weMoto3 uye yakanga iriwo kukunda kwokutanga kwaMahindra. Iye zvino akanga ava nenzvimbo 4 dzokupinda padare mumakwikwi 8 okutanga emwaka uye akazviwana ari kurwira zita. Pashure pemakwikwi maviri epakati nepakati uye kudonha paBrno, Bagnaia akawana nzvimbo yake yekutanga muSilverstone yakakonzerwa nemvura uye akapedza wechipiri shure kwaBrad Binder munhangemutange inonakidza. Bagnaia akahwina mujaho wake wechipiri wemwaka muSepang, achikunda mujaho uyu zvakanaka negap rakakura mushure mekunge Brad Binder, Joan Mir naLorenzo Dalla Porta vese vakadonha mukona imwechete panguva yekutanga kwemujaho, iyo yaive izere nekudonha kwakawanda. Akapedza mwaka aine mapoinzi zana nemakumi mana nemashanu kuti ave pachinzvimbo chechina muMoto3 Championship aine huwandu hwekukunda maviri uye matanhatu mapodhiyamu. Bagnaia aiva nomukana wokupedza ari wechipiri muWorld Championship shure kwaBrad Binder asi zvinosuruvarisa kuti akabudiswa muPhillip Island neValencia naGabriel Rodrigo. Rodrigo akadzinga Fabio Di Giannantonio muAustralia uyo akaenda pasi ndokuunganidza Bagnaia naye. MuValencia Rodrigo akaita tsaona yakakwira padanho rekutanga achisvika pakona yekupedzisira, zvakare Bagnaia akawira pasi zvisingadzivisiki.