Ka cika wannan magana: Ba da daɗewa ba majami'ar ta zama cibiyar ƙaramar al'umma ta Yahudawa, ɗaya daga cikin shugabanninta, Abraham Reuben, ya zama ɗan majalisa a kamfanin birnin Karachi a shekara ta 1936. Rarraba Indiya ta Biritaniya a kan ka'idojin addini tsakanin 'yan Hindu da Musulmai a watan Agusta 1947 ya ga garin Karachi ya faɗi a cikin iyakokin sabuwar jihar Musulmi ta Pakistan, bayan haka aka canza alamar haɗin gaban majami'ar, ta sanya shi a ƙarƙashin "Al'ummar Pakistan Bene Israel". Kasa da shekara guda bayan haka, 'yan tawayen Musulmai suka kai hari suka cinna wa majami'ar wuta bayan sanarwar samun' yancin kai na Jihar Isra'ila a shekarar 1948. A wannan lokacin, an kai wa Yahudawa da yawa a duk faɗin Pakistan hari, wanda a ƙarshe ya sa ɓangarorin al'umma su gudu zuwa makwabciyar Indiya. Duk da haka, yawan hare-haren da aka kai wa Yahudawa a Pakistan ya karu bayan kowace daga cikin Larabawa-Isra'ila Wars a 1948,
1956, 1967 da kuma 1973. A farkon shekarun 1970, al'ummar yahudawan Pakistan sun fice zuwa Isra'ila ko Indiya saboda ƙauracewar yahudawa daga ƙasashen musulmi, wanda ya sa majami'ar ta yi barci sosai. A ranar 17 ga Yuli, 1988, an rushe majami'ar kuma a ƙarshe an maye gurbinsa da filin cin kasuwa (Madiha Square) a cikin unguwar Ranchore Line da ke kudancin Karachi.