Filizola's awards and honors include the title of European doctor in biotechnology from the European Association for Higher Education in Biotechnology in Genova, Italy (1999), a National Research Service Award from NIDA (2002), The Doctor Harold and Golden Lamport Award for Excellence in Basic Research from Mount Sinai School of Medicine (2008), and an Independent Scientist Award from NIDA (2009–present). She is also a member of the Faculty of 1000 for Pharmacology and Drug Discovery since 2013.