The current consensus on the rate of pycnonuclear reactions is not coherent. There are currently a lot of uncertainties to consider when modelling the rate of pycnonuclear reactions, especially in spaces with high numbers of free particles. The primary focus of current research is on the effects of crystal lattice deformation and the presence of free neutrons on the reaction rate. Every time fusion occurs, nuclei are removed from the crystal lattice - creating a defect. The difficulty of approximating this model lies within the fact that the further changes occurring to the lattice and the effect of various deformations on the rate are thus far unknown. Since neighbouring lattices can affect the rate of reaction too, negligence of such deformations could lead to major discrepancies. Another confounding variable would be the presence of free neutrons in the crusts of neutron stars. The presence of free neutrons could potentially affect the Coulomb barrier, making it either taller or thicker. A study published by D.G. Yakovlev in 2006 has shown that the rate calculation of the first pycnonuclear fusion of two  nuclei in the crust of a neutron star can have an uncertainty magnitude of up to seven. In this study, Yakovlev also highlighted the uncertainty in the threshold of pycnonuclear fusion (e.g., at what density it starts), giving the approximate density required for the start of pycnonuclear fusion of g cm, arriving at a similar conclusion as Haesnel and Zdunik. According to Haesnel and Zdunik, additional uncertainty of rate calculations in neutron stars can also be due to uneven distribution of the crustal heating, which can impact the thermal states of neutron stars before and after accretion.
In white dwarfs and neutron stars, the nuclear reaction rates can not only be affected by pycnonuclear reactions but also by the plasma screening of the Coulomb interaction. A Ukrainian Electrodynamic Research Laboratory "Proton-21", established that by forming a thin electron plasma layer on the surface of the target material, and, thus, forcing the self-compression of the target material at low temperatures, they could stimulate the process of pycnonuclear fusion. The startup of the process was due to the self-contracting plasma "scanning" the entire volume of the target material, screening the Coulomb field.