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@ARTICLE{Zappia2018-lz,
  title    = "{Clustering trees: a visualization for evaluating clusterings at
              multiple resolutions}",
  author   = "Zappia, Luke and Oshlack, Alicia",
  journal  = "GigaScience",
  volume   =  7,
  number   =  7,
  month    =  jul,
  year     =  2018,
  url      = "http://dx.doi.org/10.1093/gigascience/giy083",
  keywords = "
              methods;visualisation;clustering;software;[clustree];ME;CITED;Combes
              organoid;Thesis;clustree package;PhD analysis methods",
  language = "en",
  issn     = "2047-217X",
  pmid     = "30010766",
  doi      = "10.1093/gigascience/giy083",
  pmc      = "PMC6057528"
}

@ARTICLE{Sugiyama1981-wu,
  title    = "{Methods for Visual Understanding of Hierarchical System
              Structures}",
  author   = "Sugiyama, K and Tagawa, S and Toda, M",
  journal  = "IEEE transactions on systems, man, and cybernetics",
  volume   =  11,
  number   =  2,
  pages    = "109--125",
  month    =  feb,
  year     =  1981,
  url      = "http://dx.doi.org/10.1109/TSMC.1981.4308636",
  keywords = "Computer displays;Constraint theory;Engineering
              drawings;Flowcharts;Hierarchical systems;Image
              recognition;Information science;Processor
              scheduling;Programming;Testing;graphs;visualisation;UNREAD;CITED;clustree
              paper;clustree package",
  issn     = "0018-9472",
  doi      = "10.1109/TSMC.1981.4308636"
}

@ARTICLE{Reingold1981-iy,
  title    = "{Tidier Drawings of Trees}",
  author   = "Reingold, E M and Tilford, J S",
  journal  = "IEEE Transactions on Software Engineering",
  volume   = "SE-7",
  number   =  2,
  pages    = "223--228",
  month    =  mar,
  year     =  1981,
  url      = "http://dx.doi.org/10.1109/TSE.1981.234519",
  keywords = "Data structures;tree structures;trees;Binary trees;Computer
              science;Engineering drawings;Printing;Software algorithms;Tree
              data structures;Data structures;tree
              structures;trees;graphs;visualisation;methods;UNREAD;CITED;clustree
              paper;clustree package",
  issn     = "0098-5589",
  doi      = "10.1109/TSE.1981.234519"
}

@ARTICLE{Kiselev2017-an,
  title    = "{SC3: consensus clustering of single-cell RNA-seq data}",
  author   = "Kiselev, Vladimir Yu and Kirschner, Kristina and Schaub, Michael
              T and Andrews, Tallulah and Yiu, Andrew and Chandra, Tamir and
              Natarajan, Kedar N and Reik, Wolf and Barahona, Mauricio and
              Green, Anthony R and Hemberg, Martin",
  journal  = "Nature methods",
  volume   =  14,
  number   =  5,
  pages    = "483--486",
  month    =  mar,
  year     =  2017,
  url      = "http://dx.doi.org/10.1038/nmeth.4236",
  keywords = "[SC3];single-cell;rna-seq;software;methods;consensus
              clustering;k-means;CITED;Splatter Paper;scRNA-tools
              paper;clustree paper;Thesis;clustree package",
  language = "en",
  issn     = "1548-7091, 1548-7105",
  pmid     = "28346451",
  doi      = "10.1038/nmeth.4236"
}

@ARTICLE{Satija2015-or,
  title     = "{Spatial reconstruction of single-cell gene expression data}",
  author    = "Satija, Rahul and Farrell, Jeffrey A and Gennert, David and
               Schier, Alexander F and Regev, Aviv",
  journal   = "Nature Biotechnology",
  publisher = "Nature Publishing Group",
  volume    =  33,
  number    =  5,
  pages     = "495--502",
  month     =  apr,
  year      =  2015,
  url       = "http://dx.doi.org/10.1038/nbt.3192",
  keywords  = "
               single-cell;rna-seq;localisation;software;[Seurat];UNREAD;methods;CITED;Splatter
               Paper;Confimation;scRNA-tools paper;Second year review;clustree
               paper;Combes organoid;Thesis;PhD analysis methods;clustree
               package",
  issn      = "1087-0156, 1546-1696",
  pmid      = "25867923",
  doi       = "10.1038/nbt.3192",
  pmc       = "PMC4430369"
}
