##gff-version   3
##sequence-region   seq0 1 30427671
##sequence-region   seq1 1 19698289
##sequence-region   seq2 1 23459830
##sequence-region   seq3 1 18585056
##sequence-region   seq4 1 26975502
##sequence-region   seq5 1 366924
#1 CHROMOSOME dumped from ADB: Feb/3/09 16:9; last updated: 2009-02-02
#2 CHROMOSOME dumped from ADB: Feb/3/09 16:10; last updated: 2009-02-02
#3 CHROMOSOME dumped from ADB: Feb/3/09 16:10; last updated: 2009-02-02
#4 CHROMOSOME dumped from ADB: Feb/3/09 16:10; last updated: 2009-02-02
#5 CHROMOSOME dumped from ADB: Feb/3/09 16:10; last updated: 2009-02-02
#mitochondria CHROMOSOME dumped from ADB: Feb/3/09 16:10; last updated: 2005-06-03
seq0	LTRharvest	repeat_region	149496	155913	.	-	.	ID=repeat_region1
seq0	LTRharvest	target_site_duplication	149496	149499	.	-	.	Parent=repeat_region1
seq0	LTRharvest	LTR_retrotransposon	149500	155909	.	-	.	ID=LTR_retrotransposon1;Parent=repeat_region1;ltr_similarity=83.95;seq_number=0
seq0	LTRharvest	long_terminal_repeat	149500	149661	.	-	.	Parent=LTR_retrotransposon1
seq0	LTRdigest	primer_binding_site	155742	155752	2.75	-	.	Parent=LTR_retrotransposon1;trna=Arabidopsis_thaliana_tRNA-Lys-CTT-2-3 (chr1.trna225-LysCTT) chr1:5518062-5518134 (-) Lys (CTT) 73 bp Sc: 83.1;trnaoffset=0;pbsoffset=4;edist=1
seq0	LTRharvest	long_terminal_repeat	155757	155909	.	-	.	Parent=LTR_retrotransposon1
seq0	LTRharvest	target_site_duplication	155910	155913	.	-	.	Parent=repeat_region1
###
seq0	LTRharvest	repeat_region	249527	259131	.	-	.	ID=repeat_region2
seq0	LTRharvest	target_site_duplication	249527	249530	.	-	.	Parent=repeat_region2
seq0	LTRharvest	LTR_retrotransposon	249531	259127	.	-	.	ID=LTR_retrotransposon2;Parent=repeat_region2;ltr_similarity=85.94;seq_number=0
seq0	LTRharvest	long_terminal_repeat	249531	249713	.	-	.	Parent=LTR_retrotransposon2
seq0	LTRdigest	RR_tract	249717	249727	.	-	.	Parent=LTR_retrotransposon2
seq0	LTRharvest	long_terminal_repeat	258936	259127	.	-	.	Parent=LTR_retrotransposon2
seq0	LTRharvest	target_site_duplication	259128	259131	.	-	.	Parent=repeat_region2
###
seq0	LTRharvest	repeat_region	428928	438096	.	-	.	ID=repeat_region3
seq0	LTRharvest	target_site_duplication	428928	428931	.	-	.	Parent=repeat_region3
seq0	LTRharvest	LTR_retrotransposon	428932	438092	.	-	.	ID=LTR_retrotransposon3;Parent=repeat_region3;ltr_similarity=84.96;seq_number=0
seq0	LTRharvest	long_terminal_repeat	428932	429046	.	-	.	Parent=LTR_retrotransposon3
seq0	LTRdigest	RR_tract	429050	429063	.	-	.	Parent=LTR_retrotransposon3
seq0	LTRharvest	long_terminal_repeat	437960	438092	.	-	.	Parent=LTR_retrotransposon3
seq0	LTRharvest	target_site_duplication	438093	438096	.	-	.	Parent=repeat_region3
###
seq0	LTRharvest	repeat_region	2659370	2663975	.	-	.	ID=repeat_region4
seq0	LTRharvest	target_site_duplication	2659370	2659373	.	-	.	Parent=repeat_region4
seq0	LTRharvest	LTR_retrotransposon	2659374	2663971	.	-	.	ID=LTR_retrotransposon4;Parent=repeat_region4;ltr_similarity=85.05;seq_number=0
seq0	LTRharvest	long_terminal_repeat	2659374	2659694	.	-	.	Parent=LTR_retrotransposon4
seq0	LTRdigest	RR_tract	2659667	2659676	.	-	.	Parent=LTR_retrotransposon4
seq0	LTRharvest	long_terminal_repeat	2663653	2663971	.	-	.	Parent=LTR_retrotransposon4
seq0	LTRharvest	target_site_duplication	2663972	2663975	.	-	.	Parent=repeat_region4
###
seq0	LTRharvest	repeat_region	3357950	3363287	.	?	.	ID=repeat_region5
seq0	LTRharvest	target_site_duplication	3357950	3357953	.	?	.	Parent=repeat_region5
seq0	LTRharvest	LTR_retrotransposon	3357954	3363283	.	?	.	ID=LTR_retrotransposon5;Parent=repeat_region5;ltr_similarity=84.68;seq_number=0
seq0	LTRharvest	long_terminal_repeat	3357954	3358064	.	?	.	Parent=LTR_retrotransposon5
seq0	LTRharvest	long_terminal_repeat	3363160	3363283	.	?	.	Parent=LTR_retrotransposon5
seq0	LTRharvest	target_site_duplication	3363284	3363287	.	?	.	Parent=repeat_region5
###
seq0	LTRharvest	repeat_region	3780760	3785725	.	+	.	ID=repeat_region6
seq0	LTRharvest	target_site_duplication	3780760	3780764	.	+	.	Parent=repeat_region6
seq0	LTRharvest	LTR_retrotransposon	3780765	3785720	.	+	.	ID=LTR_retrotransposon6;Parent=repeat_region6;ltr_similarity=100.00;seq_number=0
seq0	LTRharvest	long_terminal_repeat	3780765	3781204	.	+	.	Parent=LTR_retrotransposon6
seq0	LTRdigest	protein_match	3782804	3783155	2.1e-28	+	.	Parent=LTR_retrotransposon6;reading_frame=2;name=rve
seq0	LTRdigest	RR_tract	3785272	3785280	.	+	.	Parent=LTR_retrotransposon6
seq0	LTRharvest	long_terminal_repeat	3785281	3785720	.	+	.	Parent=LTR_retrotransposon6
seq0	LTRharvest	target_site_duplication	3785721	3785725	.	+	.	Parent=repeat_region6
###
seq0	LTRharvest	repeat_region	3907114	3911677	.	?	.	ID=repeat_region7
seq0	LTRharvest	target_site_duplication	3907114	3907117	.	?	.	Parent=repeat_region7
seq0	LTRharvest	LTR_retrotransposon	3907118	3911673	.	?	.	ID=LTR_retrotransposon7;Parent=repeat_region7;ltr_similarity=87.31;seq_number=0
seq0	LTRharvest	long_terminal_repeat	3907118	3907314	.	?	.	Parent=LTR_retrotransposon7
seq0	LTRharvest	long_terminal_repeat	3911483	3911673	.	?	.	Parent=LTR_retrotransposon7
seq0	LTRharvest	target_site_duplication	3911674	3911677	.	?	.	Parent=repeat_region7
###
seq0	LTRharvest	repeat_region	4081624	4091090	.	?	.	ID=repeat_region8
seq0	LTRharvest	target_site_duplication	4081624	4081627	.	?	.	Parent=repeat_region8
seq0	LTRharvest	LTR_retrotransposon	4081628	4091086	.	?	.	ID=LTR_retrotransposon8;Parent=repeat_region8;ltr_similarity=83.02;seq_number=0
seq0	LTRharvest	long_terminal_repeat	4081628	4081733	.	?	.	Parent=LTR_retrotransposon8
seq0	LTRharvest	long_terminal_repeat	4090985	4091086	.	?	.	Parent=LTR_retrotransposon8
seq0	LTRharvest	target_site_duplication	4091087	4091090	.	?	.	Parent=repeat_region8
###
seq0	LTRharvest	repeat_region	4119026	4126621	.	?	.	ID=repeat_region9
seq0	LTRharvest	target_site_duplication	4119026	4119029	.	?	.	Parent=repeat_region9
seq0	LTRharvest	LTR_retrotransposon	4119030	4126617	.	?	.	ID=LTR_retrotransposon9;Parent=repeat_region9;ltr_similarity=87.50;seq_number=0
seq0	LTRharvest	long_terminal_repeat	4119030	4119157	.	?	.	Parent=LTR_retrotransposon9
seq0	LTRharvest	long_terminal_repeat	4126498	4126617	.	?	.	Parent=LTR_retrotransposon9
seq0	LTRharvest	target_site_duplication	4126618	4126621	.	?	.	Parent=repeat_region9
###
seq0	LTRharvest	repeat_region	4405993	4411122	.	?	.	ID=repeat_region10
seq0	LTRharvest	target_site_duplication	4405993	4405996	.	?	.	Parent=repeat_region10
seq0	LTRharvest	LTR_retrotransposon	4405997	4411118	.	?	.	ID=LTR_retrotransposon10;Parent=repeat_region10;ltr_similarity=92.98;seq_number=0
seq0	LTRharvest	long_terminal_repeat	4405997	4406167	.	?	.	Parent=LTR_retrotransposon10
seq0	LTRharvest	long_terminal_repeat	4410948	4411118	.	?	.	Parent=LTR_retrotransposon10
seq0	LTRharvest	target_site_duplication	4411119	4411122	.	?	.	Parent=repeat_region10
###
seq0	LTRharvest	repeat_region	5691755	5696707	.	+	.	ID=repeat_region11
seq0	LTRharvest	target_site_duplication	5691755	5691758	.	+	.	Parent=repeat_region11
seq0	LTRharvest	LTR_retrotransposon	5691759	5696703	.	+	.	ID=LTR_retrotransposon11;Parent=repeat_region11;ltr_similarity=89.76;seq_number=0
seq0	LTRharvest	long_terminal_repeat	5691759	5691959	.	+	.	Parent=LTR_retrotransposon11
seq0	LTRdigest	protein_match	5692381	5692723	2.3e-17	+	.	Parent=LTR_retrotransposon11;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	protein_match	5693929	5694262	2.1e-19	+	.	Parent=LTR_retrotransposon11;reading_frame=1;name=rve
seq0	LTRharvest	long_terminal_repeat	5696499	5696703	.	+	.	Parent=LTR_retrotransposon11
seq0	LTRharvest	target_site_duplication	5696704	5696707	.	+	.	Parent=repeat_region11
###
seq0	LTRharvest	repeat_region	5897838	5902843	.	?	.	ID=repeat_region12
seq0	LTRharvest	target_site_duplication	5897838	5897841	.	?	.	Parent=repeat_region12
seq0	LTRharvest	LTR_retrotransposon	5897842	5902839	.	?	.	ID=LTR_retrotransposon12;Parent=repeat_region12;ltr_similarity=82.67;seq_number=0
seq0	LTRharvest	long_terminal_repeat	5897842	5898141	.	?	.	Parent=LTR_retrotransposon12
seq0	LTRharvest	long_terminal_repeat	5902552	5902839	.	?	.	Parent=LTR_retrotransposon12
seq0	LTRharvest	target_site_duplication	5902840	5902843	.	?	.	Parent=repeat_region12
###
seq0	LTRharvest	repeat_region	5920831	5927117	.	?	.	ID=repeat_region13
seq0	LTRharvest	target_site_duplication	5920831	5920834	.	?	.	Parent=repeat_region13
seq0	LTRharvest	LTR_retrotransposon	5920835	5927113	.	?	.	ID=LTR_retrotransposon13;Parent=repeat_region13;ltr_similarity=90.88;seq_number=0
seq0	LTRharvest	long_terminal_repeat	5920835	5921108	.	?	.	Parent=LTR_retrotransposon13
seq0	LTRharvest	long_terminal_repeat	5926845	5927113	.	?	.	Parent=LTR_retrotransposon13
seq0	LTRharvest	target_site_duplication	5927114	5927117	.	?	.	Parent=repeat_region13
###
seq0	LTRharvest	repeat_region	6009300	6014080	.	-	.	ID=repeat_region14
seq0	LTRharvest	target_site_duplication	6009300	6009303	.	-	.	Parent=repeat_region14
seq0	LTRharvest	LTR_retrotransposon	6009304	6014076	.	-	.	ID=LTR_retrotransposon14;Parent=repeat_region14;ltr_similarity=94.39;seq_number=0
seq0	LTRharvest	long_terminal_repeat	6009304	6009575	.	-	.	Parent=LTR_retrotransposon14
seq0	LTRdigest	protein_match	6011863	6012214	1.7e-27	-	.	Parent=LTR_retrotransposon14;reading_frame=2;name=rve
seq0	LTRharvest	long_terminal_repeat	6013792	6014076	.	-	.	Parent=LTR_retrotransposon14
seq0	LTRharvest	target_site_duplication	6014077	6014080	.	-	.	Parent=repeat_region14
###
seq0	LTRharvest	repeat_region	6191399	6197521	.	?	.	ID=repeat_region15
seq0	LTRharvest	target_site_duplication	6191399	6191402	.	?	.	Parent=repeat_region15
seq0	LTRharvest	LTR_retrotransposon	6191403	6197517	.	?	.	ID=LTR_retrotransposon15;Parent=repeat_region15;ltr_similarity=96.23;seq_number=0
seq0	LTRharvest	long_terminal_repeat	6191403	6191508	.	?	.	Parent=LTR_retrotransposon15
seq0	LTRharvest	long_terminal_repeat	6197414	6197517	.	?	.	Parent=LTR_retrotransposon15
seq0	LTRharvest	target_site_duplication	6197518	6197521	.	?	.	Parent=repeat_region15
###
seq0	LTRharvest	repeat_region	6538413	6543541	.	-	.	ID=repeat_region16
seq0	LTRharvest	target_site_duplication	6538413	6538417	.	-	.	Parent=repeat_region16
seq0	LTRharvest	LTR_retrotransposon	6538418	6543536	.	-	.	ID=LTR_retrotransposon16;Parent=repeat_region16;ltr_similarity=100.00;seq_number=0
seq0	LTRharvest	long_terminal_repeat	6538418	6538580	.	-	.	Parent=LTR_retrotransposon16
seq0	LTRdigest	RR_tract	6538553	6538570	.	-	.	Parent=LTR_retrotransposon16
seq0	LTRharvest	long_terminal_repeat	6543374	6543536	.	-	.	Parent=LTR_retrotransposon16
seq0	LTRharvest	target_site_duplication	6543537	6543541	.	-	.	Parent=repeat_region16
###
seq0	LTRharvest	repeat_region	6719063	6724315	.	?	.	ID=repeat_region17
seq0	LTRharvest	target_site_duplication	6719063	6719066	.	?	.	Parent=repeat_region17
seq0	LTRharvest	LTR_retrotransposon	6719067	6724311	.	?	.	ID=LTR_retrotransposon17;Parent=repeat_region17;ltr_similarity=94.59;seq_number=0
seq0	LTRharvest	long_terminal_repeat	6719067	6719324	.	?	.	Parent=LTR_retrotransposon17
seq0	LTRharvest	long_terminal_repeat	6724053	6724311	.	?	.	Parent=LTR_retrotransposon17
seq0	LTRharvest	target_site_duplication	6724312	6724315	.	?	.	Parent=repeat_region17
###
seq0	LTRharvest	repeat_region	6767250	6773972	.	?	.	ID=repeat_region18
seq0	LTRharvest	target_site_duplication	6767250	6767254	.	?	.	Parent=repeat_region18
seq0	LTRharvest	LTR_retrotransposon	6767255	6773967	.	?	.	ID=LTR_retrotransposon18;Parent=repeat_region18;ltr_similarity=91.43;seq_number=0
seq0	LTRharvest	long_terminal_repeat	6767255	6767954	.	?	.	Parent=LTR_retrotransposon18
seq0	LTRharvest	long_terminal_repeat	6773276	6773967	.	?	.	Parent=LTR_retrotransposon18
seq0	LTRharvest	target_site_duplication	6773968	6773972	.	?	.	Parent=repeat_region18
###
seq0	LTRharvest	repeat_region	6825171	6830225	.	?	.	ID=repeat_region19
seq0	LTRharvest	target_site_duplication	6825171	6825175	.	?	.	Parent=repeat_region19
seq0	LTRharvest	LTR_retrotransposon	6825176	6830220	.	?	.	ID=LTR_retrotransposon19;Parent=repeat_region19;ltr_similarity=87.61;seq_number=0
seq0	LTRharvest	long_terminal_repeat	6825176	6825287	.	?	.	Parent=LTR_retrotransposon19
seq0	LTRharvest	long_terminal_repeat	6830108	6830220	.	?	.	Parent=LTR_retrotransposon19
seq0	LTRharvest	target_site_duplication	6830221	6830225	.	?	.	Parent=repeat_region19
###
seq0	LTRharvest	repeat_region	7025893	7047016	.	?	.	ID=repeat_region20
seq0	LTRharvest	target_site_duplication	7025893	7025896	.	?	.	Parent=repeat_region20
seq0	LTRharvest	LTR_retrotransposon	7025897	7047012	.	?	.	ID=LTR_retrotransposon20;Parent=repeat_region20;ltr_similarity=93.55;seq_number=0
seq0	LTRharvest	long_terminal_repeat	7025897	7026051	.	?	.	Parent=LTR_retrotransposon20
seq0	LTRharvest	long_terminal_repeat	7046860	7047012	.	?	.	Parent=LTR_retrotransposon20
seq0	LTRharvest	target_site_duplication	7047013	7047016	.	?	.	Parent=repeat_region20
###
seq0	LTRharvest	repeat_region	8445390	8466738	.	-	.	ID=repeat_region21
seq0	LTRharvest	target_site_duplication	8445390	8445393	.	-	.	Parent=repeat_region21
seq0	LTRharvest	LTR_retrotransposon	8445394	8466734	.	-	.	ID=LTR_retrotransposon21;Parent=repeat_region21;ltr_similarity=91.48;seq_number=0
seq0	LTRharvest	long_terminal_repeat	8445394	8445874	.	-	.	Parent=LTR_retrotransposon21
seq0	LTRdigest	RR_tract	8445854	8445871	.	-	.	Parent=LTR_retrotransposon21
seq0	LTRharvest	long_terminal_repeat	8466257	8466734	.	-	.	Parent=LTR_retrotransposon21
seq0	LTRharvest	target_site_duplication	8466735	8466738	.	-	.	Parent=repeat_region21
###
seq0	LTRharvest	repeat_region	8578707	8588765	.	?	.	ID=repeat_region22
seq0	LTRharvest	target_site_duplication	8578707	8578710	.	?	.	Parent=repeat_region22
seq0	LTRharvest	LTR_retrotransposon	8578711	8588761	.	?	.	ID=LTR_retrotransposon22;Parent=repeat_region22;ltr_similarity=84.67;seq_number=0
seq0	LTRharvest	long_terminal_repeat	8578711	8579006	.	?	.	Parent=LTR_retrotransposon22
seq0	LTRharvest	long_terminal_repeat	8588462	8588761	.	?	.	Parent=LTR_retrotransposon22
seq0	LTRharvest	target_site_duplication	8588762	8588765	.	?	.	Parent=repeat_region22
###
seq0	LTRharvest	repeat_region	8643646	8649292	.	?	.	ID=repeat_region23
seq0	LTRharvest	target_site_duplication	8643646	8643649	.	?	.	Parent=repeat_region23
seq0	LTRharvest	LTR_retrotransposon	8643650	8649288	.	?	.	ID=LTR_retrotransposon23;Parent=repeat_region23;ltr_similarity=87.10;seq_number=0
seq0	LTRharvest	long_terminal_repeat	8643650	8643771	.	?	.	Parent=LTR_retrotransposon23
seq0	LTRharvest	long_terminal_repeat	8649165	8649288	.	?	.	Parent=LTR_retrotransposon23
seq0	LTRharvest	target_site_duplication	8649289	8649292	.	?	.	Parent=repeat_region23
###
seq0	LTRharvest	repeat_region	9368335	9373320	.	-	.	ID=repeat_region24
seq0	LTRharvest	target_site_duplication	9368335	9368343	.	-	.	Parent=repeat_region24
seq0	LTRharvest	LTR_retrotransposon	9368344	9373311	.	-	.	ID=LTR_retrotransposon24;Parent=repeat_region24;ltr_similarity=97.24;seq_number=0
seq0	LTRharvest	long_terminal_repeat	9368344	9368521	.	-	.	Parent=LTR_retrotransposon24
seq0	LTRdigest	RR_tract	9368494	9368501	.	-	.	Parent=LTR_retrotransposon24
seq0	LTRdigest	protein_match	9370762	9371098	8.1e-19	-	.	Parent=LTR_retrotransposon24;reading_frame=2;name=rve
seq0	LTRdigest	protein_match	9372292	9372541	1.7e-10	-	.	Parent=LTR_retrotransposon24;reading_frame=2;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	9373131	9373311	.	-	.	Parent=LTR_retrotransposon24
seq0	LTRharvest	target_site_duplication	9373312	9373320	.	-	.	Parent=repeat_region24
###
seq0	LTRharvest	repeat_region	9475997	9480639	.	+	.	ID=repeat_region25
seq0	LTRharvest	target_site_duplication	9475997	9476001	.	+	.	Parent=repeat_region25
seq0	LTRharvest	LTR_retrotransposon	9476002	9480634	.	+	.	ID=LTR_retrotransposon25;Parent=repeat_region25;ltr_similarity=98.33;seq_number=0
seq0	LTRharvest	long_terminal_repeat	9476002	9476121	.	+	.	Parent=LTR_retrotransposon25
seq0	LTRdigest	protein_match	9476461	9476737	5.2e-08	+	.	Parent=LTR_retrotransposon25;reading_frame=0;name=Retrotrans_gag
seq0	LTRdigest	protein_match	9477748	9478081	5.8e-23	+	.	Parent=LTR_retrotransposon25;reading_frame=0;name=rve
seq0	LTRharvest	long_terminal_repeat	9480515	9480634	.	+	.	Parent=LTR_retrotransposon25
seq0	LTRharvest	target_site_duplication	9480635	9480639	.	+	.	Parent=repeat_region25
###
seq0	LTRharvest	repeat_region	10121574	10125773	.	+	.	ID=repeat_region26
seq0	LTRharvest	target_site_duplication	10121574	10121578	.	+	.	Parent=repeat_region26
seq0	LTRharvest	LTR_retrotransposon	10121579	10125768	.	+	.	ID=LTR_retrotransposon26;Parent=repeat_region26;ltr_similarity=84.80;seq_number=0
seq0	LTRharvest	long_terminal_repeat	10121579	10121749	.	+	.	Parent=LTR_retrotransposon26
seq0	LTRdigest	RR_tract	10125583	10125593	.	+	.	Parent=LTR_retrotransposon26
seq0	LTRharvest	long_terminal_repeat	10125602	10125768	.	+	.	Parent=LTR_retrotransposon26
seq0	LTRharvest	target_site_duplication	10125769	10125773	.	+	.	Parent=repeat_region26
###
seq0	LTRharvest	repeat_region	10696715	10701593	.	+	.	ID=repeat_region27
seq0	LTRharvest	target_site_duplication	10696715	10696718	.	+	.	Parent=repeat_region27
seq0	LTRharvest	LTR_retrotransposon	10696719	10701589	.	+	.	ID=LTR_retrotransposon27;Parent=repeat_region27;ltr_similarity=92.63;seq_number=0
seq0	LTRharvest	long_terminal_repeat	10696719	10696906	.	+	.	Parent=LTR_retrotransposon27
seq0	LTRdigest	protein_match	10697407	10697734	7.2e-22	+	.	Parent=LTR_retrotransposon27;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	protein_match	10698871	10699198	6.2e-21	+	.	Parent=LTR_retrotransposon27;reading_frame=1;name=rve
seq0	LTRharvest	long_terminal_repeat	10701400	10701589	.	+	.	Parent=LTR_retrotransposon27
seq0	LTRharvest	target_site_duplication	10701590	10701593	.	+	.	Parent=repeat_region27
###
seq0	LTRharvest	repeat_region	11125141	11133108	.	?	.	ID=repeat_region28
seq0	LTRharvest	target_site_duplication	11125141	11125144	.	?	.	Parent=repeat_region28
seq0	LTRharvest	LTR_retrotransposon	11125145	11133104	.	?	.	ID=LTR_retrotransposon28;Parent=repeat_region28;ltr_similarity=78.26;seq_number=0
seq0	LTRharvest	long_terminal_repeat	11125145	11125303	.	?	.	Parent=LTR_retrotransposon28
seq0	LTRharvest	long_terminal_repeat	11132944	11133104	.	?	.	Parent=LTR_retrotransposon28
seq0	LTRharvest	target_site_duplication	11133105	11133108	.	?	.	Parent=repeat_region28
###
seq0	LTRharvest	repeat_region	11148080	11152834	.	-	.	ID=repeat_region29
seq0	LTRharvest	target_site_duplication	11148080	11148083	.	-	.	Parent=repeat_region29
seq0	LTRharvest	LTR_retrotransposon	11148084	11152830	.	-	.	ID=LTR_retrotransposon29;Parent=repeat_region29;ltr_similarity=96.37;seq_number=0
seq0	LTRharvest	long_terminal_repeat	11148084	11148386	.	-	.	Parent=LTR_retrotransposon29
seq0	LTRdigest	protein_match	11150632	11150974	5.6e-25	-	.	Parent=LTR_retrotransposon29;reading_frame=2;name=rve
seq0	LTRdigest	protein_match	11151976	11152186	1.3e-09	-	.	Parent=LTR_retrotransposon29;reading_frame=2;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	11152531	11152830	.	-	.	Parent=LTR_retrotransposon29
seq0	LTRharvest	target_site_duplication	11152831	11152834	.	-	.	Parent=repeat_region29
###
seq0	LTRharvest	repeat_region	11284899	11295623	.	?	.	ID=repeat_region30
seq0	LTRharvest	target_site_duplication	11284899	11284902	.	?	.	Parent=repeat_region30
seq0	LTRharvest	LTR_retrotransposon	11284903	11295619	.	?	.	ID=LTR_retrotransposon30;Parent=repeat_region30;ltr_similarity=90.14;seq_number=0
seq0	LTRharvest	long_terminal_repeat	11284903	11285389	.	?	.	Parent=LTR_retrotransposon30
seq0	LTRharvest	long_terminal_repeat	11295136	11295619	.	?	.	Parent=LTR_retrotransposon30
seq0	LTRharvest	target_site_duplication	11295620	11295623	.	?	.	Parent=repeat_region30
###
seq0	LTRharvest	repeat_region	11339002	11344666	.	?	.	ID=repeat_region31
seq0	LTRharvest	target_site_duplication	11339002	11339005	.	?	.	Parent=repeat_region31
seq0	LTRharvest	LTR_retrotransposon	11339006	11344662	.	?	.	ID=LTR_retrotransposon31;Parent=repeat_region31;ltr_similarity=78.60;seq_number=0
seq0	LTRharvest	long_terminal_repeat	11339006	11339459	.	?	.	Parent=LTR_retrotransposon31
seq0	LTRharvest	long_terminal_repeat	11344205	11344662	.	?	.	Parent=LTR_retrotransposon31
seq0	LTRharvest	target_site_duplication	11344663	11344666	.	?	.	Parent=repeat_region31
###
seq0	LTRharvest	repeat_region	11346526	11355065	.	+	.	ID=repeat_region32
seq0	LTRharvest	target_site_duplication	11346526	11346529	.	+	.	Parent=repeat_region32
seq0	LTRharvest	LTR_retrotransposon	11346530	11355061	.	+	.	ID=LTR_retrotransposon32;Parent=repeat_region32;ltr_similarity=83.02;seq_number=0
seq0	LTRharvest	long_terminal_repeat	11346530	11347051	.	+	.	Parent=LTR_retrotransposon32
seq0	LTRdigest	RR_tract	11354528	11354536	.	+	.	Parent=LTR_retrotransposon32
seq0	LTRharvest	long_terminal_repeat	11354532	11355061	.	+	.	Parent=LTR_retrotransposon32
seq0	LTRharvest	target_site_duplication	11355062	11355065	.	+	.	Parent=repeat_region32
###
seq0	LTRharvest	repeat_region	11697945	11705485	.	+	.	ID=repeat_region33
seq0	LTRharvest	target_site_duplication	11697945	11697949	.	+	.	Parent=repeat_region33
seq0	LTRharvest	LTR_retrotransposon	11697950	11705480	.	+	.	ID=LTR_retrotransposon33;Parent=repeat_region33;ltr_similarity=87.39;seq_number=0
seq0	LTRharvest	long_terminal_repeat	11697950	11698279	.	+	.	Parent=LTR_retrotransposon33
seq0	LTRdigest	RR_tract	11705109	11705118	.	+	.	Parent=LTR_retrotransposon33
seq0	LTRharvest	long_terminal_repeat	11705140	11705480	.	+	.	Parent=LTR_retrotransposon33
seq0	LTRharvest	target_site_duplication	11705481	11705485	.	+	.	Parent=repeat_region33
###
seq0	LTRharvest	repeat_region	11789443	11794078	.	+	.	ID=repeat_region34
seq0	LTRharvest	target_site_duplication	11789443	11789446	.	+	.	Parent=repeat_region34
seq0	LTRharvest	LTR_retrotransposon	11789447	11794074	.	+	.	ID=LTR_retrotransposon34;Parent=repeat_region34;ltr_similarity=97.12;seq_number=0
seq0	LTRharvest	long_terminal_repeat	11789447	11789724	.	+	.	Parent=LTR_retrotransposon34
seq0	LTRdigest	protein_match	11791244	11791598	1.2e-27	+	.	Parent=LTR_retrotransposon34;reading_frame=0;name=rve
seq0	LTRdigest	RR_tract	11793796	11793805	.	+	.	Parent=LTR_retrotransposon34
seq0	LTRharvest	long_terminal_repeat	11793801	11794074	.	+	.	Parent=LTR_retrotransposon34
seq0	LTRharvest	target_site_duplication	11794075	11794078	.	+	.	Parent=repeat_region34
###
seq0	LTRharvest	repeat_region	11890862	11900760	.	?	.	ID=repeat_region35
seq0	LTRharvest	target_site_duplication	11890862	11890865	.	?	.	Parent=repeat_region35
seq0	LTRharvest	LTR_retrotransposon	11890866	11900756	.	?	.	ID=LTR_retrotransposon35;Parent=repeat_region35;ltr_similarity=77.78;seq_number=0
seq0	LTRharvest	long_terminal_repeat	11890866	11891020	.	?	.	Parent=LTR_retrotransposon35
seq0	LTRharvest	long_terminal_repeat	11900595	11900756	.	?	.	Parent=LTR_retrotransposon35
seq0	LTRharvest	target_site_duplication	11900757	11900760	.	?	.	Parent=repeat_region35
###
seq0	LTRharvest	repeat_region	12194784	12199424	.	?	.	ID=repeat_region36
seq0	LTRharvest	target_site_duplication	12194784	12194787	.	?	.	Parent=repeat_region36
seq0	LTRharvest	LTR_retrotransposon	12194788	12199420	.	?	.	ID=LTR_retrotransposon36;Parent=repeat_region36;ltr_similarity=87.39;seq_number=0
seq0	LTRharvest	long_terminal_repeat	12194788	12195008	.	?	.	Parent=LTR_retrotransposon36
seq0	LTRharvest	long_terminal_repeat	12199191	12199420	.	?	.	Parent=LTR_retrotransposon36
seq0	LTRharvest	target_site_duplication	12199421	12199424	.	?	.	Parent=repeat_region36
###
seq0	LTRharvest	repeat_region	12541817	12546904	.	?	.	ID=repeat_region37
seq0	LTRharvest	target_site_duplication	12541817	12541820	.	?	.	Parent=repeat_region37
seq0	LTRharvest	LTR_retrotransposon	12541821	12546900	.	?	.	ID=LTR_retrotransposon37;Parent=repeat_region37;ltr_similarity=77.06;seq_number=0
seq0	LTRharvest	long_terminal_repeat	12541821	12541987	.	?	.	Parent=LTR_retrotransposon37
seq0	LTRharvest	long_terminal_repeat	12546731	12546900	.	?	.	Parent=LTR_retrotransposon37
seq0	LTRharvest	target_site_duplication	12546901	12546904	.	?	.	Parent=repeat_region37
###
seq0	LTRharvest	repeat_region	12664507	12673937	.	-	.	ID=repeat_region38
seq0	LTRharvest	target_site_duplication	12664507	12664510	.	-	.	Parent=repeat_region38
seq0	LTRharvest	LTR_retrotransposon	12664511	12673933	.	-	.	ID=LTR_retrotransposon38;Parent=repeat_region38;ltr_similarity=89.47;seq_number=0
seq0	LTRharvest	long_terminal_repeat	12664511	12664681	.	-	.	Parent=LTR_retrotransposon38
seq0	LTRdigest	protein_match	12668960	12669074	7e-06	-	.	Parent=LTR_retrotransposon38;reading_frame=2;name=rve
seq0	LTRdigest	protein_match	12669085	12669289	4.5e-07	-	.	Parent=LTR_retrotransposon38;reading_frame=0;name=rve
seq0	LTRdigest	protein_match	12672052	12672274	6.1e-15	-	.	Parent=LTR_retrotransposon38;reading_frame=0;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	12673776	12673933	.	-	.	Parent=LTR_retrotransposon38
seq0	LTRharvest	target_site_duplication	12673934	12673937	.	-	.	Parent=repeat_region38
###
seq0	LTRharvest	repeat_region	12871508	12878783	.	?	.	ID=repeat_region39
seq0	LTRharvest	target_site_duplication	12871508	12871511	.	?	.	Parent=repeat_region39
seq0	LTRharvest	LTR_retrotransposon	12871512	12878779	.	?	.	ID=LTR_retrotransposon39;Parent=repeat_region39;ltr_similarity=96.02;seq_number=0
seq0	LTRharvest	long_terminal_repeat	12871512	12872274	.	?	.	Parent=LTR_retrotransposon39
seq0	LTRharvest	long_terminal_repeat	12878002	12878779	.	?	.	Parent=LTR_retrotransposon39
seq0	LTRharvest	target_site_duplication	12878780	12878783	.	?	.	Parent=repeat_region39
###
seq0	LTRharvest	repeat_region	12969455	12975240	.	+	.	ID=repeat_region40
seq0	LTRharvest	target_site_duplication	12969455	12969458	.	+	.	Parent=repeat_region40
seq0	LTRharvest	LTR_retrotransposon	12969459	12975236	.	+	.	ID=LTR_retrotransposon40;Parent=repeat_region40;ltr_similarity=80.95;seq_number=0
seq0	LTRharvest	long_terminal_repeat	12969459	12969646	.	+	.	Parent=LTR_retrotransposon40
seq0	LTRdigest	RR_tract	12975025	12975035	.	+	.	Parent=LTR_retrotransposon40
seq0	LTRharvest	long_terminal_repeat	12975048	12975236	.	+	.	Parent=LTR_retrotransposon40
seq0	LTRharvest	target_site_duplication	12975237	12975240	.	+	.	Parent=repeat_region40
###
seq0	LTRharvest	repeat_region	13324757	13329595	.	+	.	ID=repeat_region41
seq0	LTRharvest	target_site_duplication	13324757	13324760	.	+	.	Parent=repeat_region41
seq0	LTRharvest	LTR_retrotransposon	13324761	13329591	.	+	.	ID=LTR_retrotransposon41;Parent=repeat_region41;ltr_similarity=88.89;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13324761	13324867	.	+	.	Parent=LTR_retrotransposon41
seq0	LTRdigest	protein_match	13326502	13326817	8.9e-12	+	.	Parent=LTR_retrotransposon41;reading_frame=1;name=rve
seq0	LTRharvest	long_terminal_repeat	13329484	13329591	.	+	.	Parent=LTR_retrotransposon41
seq0	LTRharvest	target_site_duplication	13329592	13329595	.	+	.	Parent=repeat_region41
###
seq0	LTRharvest	repeat_region	13334461	13339874	.	+	.	ID=repeat_region42
seq0	LTRharvest	target_site_duplication	13334461	13334464	.	+	.	Parent=repeat_region42
seq0	LTRharvest	LTR_retrotransposon	13334465	13339870	.	+	.	ID=LTR_retrotransposon42;Parent=repeat_region42;ltr_similarity=91.92;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13334465	13334860	.	+	.	Parent=LTR_retrotransposon42
seq0	LTRdigest	primer_binding_site	13334865	13334879	3.75	+	.	Parent=LTR_retrotransposon42;trna=Arabidopsis_thaliana_tRNA-Thr-AGT-3-1 (chr1.trna209-ThrAGT) chr1:18230479-18230552 (-) Thr (AGT) 74 bp Sc: 65.5;trnaoffset=0;pbsoffset=4;edist=1
seq0	LTRdigest	protein_match	13335417	13335681	4.5e-20	+	.	Parent=LTR_retrotransposon42;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	protein_match	13336891	13337374	1.3e-24	+	.	Parent=LTR_retrotransposon42;reading_frame=2;name=RVT_1
seq0	LTRdigest	protein_match	13338415	13338706	1.1e-07	+	.	Parent=LTR_retrotransposon42;reading_frame=2;name=rve
seq0	LTRharvest	long_terminal_repeat	13339477	13339870	.	+	.	Parent=LTR_retrotransposon42
seq0	LTRharvest	target_site_duplication	13339871	13339874	.	+	.	Parent=repeat_region42
###
seq0	LTRharvest	repeat_region	13388863	13396656	.	-	.	ID=repeat_region43
seq0	LTRharvest	target_site_duplication	13388863	13388868	.	-	.	Parent=repeat_region43
seq0	LTRharvest	LTR_retrotransposon	13388869	13396650	.	-	.	ID=LTR_retrotransposon43;Parent=repeat_region43;ltr_similarity=83.46;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13388869	13389001	.	-	.	Parent=LTR_retrotransposon43
seq0	LTRdigest	protein_match	13392736	13393462	1.4e-41	-	.	Parent=LTR_retrotransposon43;reading_frame=2;name=RVT_1
seq0	LTRharvest	long_terminal_repeat	13396527	13396650	.	-	.	Parent=LTR_retrotransposon43
seq0	LTRharvest	target_site_duplication	13396651	13396656	.	-	.	Parent=repeat_region43
###
seq0	LTRharvest	repeat_region	13398495	13402666	.	+	.	ID=repeat_region44
seq0	LTRharvest	target_site_duplication	13398495	13398498	.	+	.	Parent=repeat_region44
seq0	LTRharvest	LTR_retrotransposon	13398499	13402662	.	+	.	ID=LTR_retrotransposon44;Parent=repeat_region44;ltr_similarity=85.44;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13398499	13398652	.	+	.	Parent=LTR_retrotransposon44
seq0	LTRdigest	protein_match	13399434	13399545	1.4e-06	+	.	Parent=LTR_retrotransposon44;reading_frame=2;name=Retrotrans_gag
seq0	LTRdigest	protein_match	13399543	13399714	5.2e-07	+	.	Parent=LTR_retrotransposon44;reading_frame=0;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	13402505	13402662	.	+	.	Parent=LTR_retrotransposon44
seq0	LTRharvest	target_site_duplication	13402663	13402666	.	+	.	Parent=repeat_region44
###
seq0	LTRharvest	repeat_region	13439439	13448535	.	+	.	ID=repeat_region45
seq0	LTRharvest	target_site_duplication	13439439	13439442	.	+	.	Parent=repeat_region45
seq0	LTRharvest	LTR_retrotransposon	13439443	13448531	.	+	.	ID=LTR_retrotransposon45;Parent=repeat_region45;ltr_similarity=95.50;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13439443	13440020	.	+	.	Parent=LTR_retrotransposon45
seq0	LTRdigest	protein_match	13442667	13443009	4.7e-25	+	.	Parent=LTR_retrotransposon45;reading_frame=2;name=rve
seq0	LTRdigest	RR_tract	13447942	13447954	.	+	.	Parent=LTR_retrotransposon45
seq0	LTRharvest	long_terminal_repeat	13447955	13448531	.	+	.	Parent=LTR_retrotransposon45
seq0	LTRharvest	target_site_duplication	13448532	13448535	.	+	.	Parent=repeat_region45
###
seq0	LTRharvest	repeat_region	13559838	13564830	.	+	.	ID=repeat_region46
seq0	LTRharvest	target_site_duplication	13559838	13559842	.	+	.	Parent=repeat_region46
seq0	LTRharvest	LTR_retrotransposon	13559843	13564825	.	+	.	ID=LTR_retrotransposon46;Parent=repeat_region46;ltr_similarity=98.71;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13559843	13560074	.	+	.	Parent=LTR_retrotransposon46
seq0	LTRdigest	protein_match	13560511	13560853	5.1e-18	+	.	Parent=LTR_retrotransposon46;reading_frame=2;name=Retrotrans_gag
seq0	LTRdigest	protein_match	13562059	13562392	4.5e-21	+	.	Parent=LTR_retrotransposon46;reading_frame=2;name=rve
seq0	LTRharvest	long_terminal_repeat	13564594	13564825	.	+	.	Parent=LTR_retrotransposon46
seq0	LTRharvest	target_site_duplication	13564826	13564830	.	+	.	Parent=repeat_region46
###
seq0	LTRharvest	repeat_region	13593054	13599714	.	+	.	ID=repeat_region47
seq0	LTRharvest	target_site_duplication	13593054	13593057	.	+	.	Parent=repeat_region47
seq0	LTRharvest	LTR_retrotransposon	13593058	13599710	.	+	.	ID=LTR_retrotransposon47;Parent=repeat_region47;ltr_similarity=95.35;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13593058	13594283	.	+	.	Parent=LTR_retrotransposon47
seq0	LTRdigest	primer_binding_site	13594286	13594299	7	+	.	Parent=LTR_retrotransposon47;trna=Arabidopsis_thaliana_tRNA-Asp-GTC-5-1 (chr5.trna27-AspGTC) chr5:11785055-11785129 (+) Asp (GTC) 75 bp Sc: 60.1;trnaoffset=0;pbsoffset=2;edist=1
seq0	LTRdigest	protein_match	13595064	13595343	1.4e-15	+	.	Parent=LTR_retrotransposon47;reading_frame=2;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	13598486	13599710	.	+	.	Parent=LTR_retrotransposon47
seq0	LTRharvest	target_site_duplication	13599711	13599714	.	+	.	Parent=repeat_region47
###
seq0	LTRharvest	repeat_region	13676493	13682113	.	-	.	ID=repeat_region48
seq0	LTRharvest	target_site_duplication	13676493	13676497	.	-	.	Parent=repeat_region48
seq0	LTRharvest	LTR_retrotransposon	13676498	13682108	.	-	.	ID=LTR_retrotransposon48;Parent=repeat_region48;ltr_similarity=86.84;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13676498	13676685	.	-	.	Parent=LTR_retrotransposon48
seq0	LTRdigest	RR_tract	13676658	13676680	.	-	.	Parent=LTR_retrotransposon48
seq0	LTRdigest	protein_match	13679595	13679766	3e-05	-	.	Parent=LTR_retrotransposon48;reading_frame=2;name=RVT_1
seq0	LTRharvest	long_terminal_repeat	13681919	13682108	.	-	.	Parent=LTR_retrotransposon48
seq0	LTRharvest	target_site_duplication	13682109	13682113	.	-	.	Parent=repeat_region48
###
seq0	LTRharvest	repeat_region	13818563	13823893	.	+	.	ID=repeat_region49
seq0	LTRharvest	target_site_duplication	13818563	13818566	.	+	.	Parent=repeat_region49
seq0	LTRharvest	LTR_retrotransposon	13818567	13823889	.	+	.	ID=LTR_retrotransposon49;Parent=repeat_region49;ltr_similarity=99.47;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13818567	13818943	.	+	.	Parent=LTR_retrotransposon49
seq0	LTRdigest	protein_match	13819408	13819684	4.1e-15	+	.	Parent=LTR_retrotransposon49;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	protein_match	13820905	13821382	5.1e-33	+	.	Parent=LTR_retrotransposon49;reading_frame=1;name=RVT_1
seq0	LTRdigest	protein_match	13822441	13822765	3.2e-15	+	.	Parent=LTR_retrotransposon49;reading_frame=1;name=rve
seq0	LTRdigest	RR_tract	13823498	13823510	.	+	.	Parent=LTR_retrotransposon49
seq0	LTRharvest	long_terminal_repeat	13823511	13823889	.	+	.	Parent=LTR_retrotransposon49
seq0	LTRharvest	target_site_duplication	13823890	13823893	.	+	.	Parent=repeat_region49
###
seq0	LTRharvest	repeat_region	13883091	13890939	.	+	.	ID=repeat_region50
seq0	LTRharvest	target_site_duplication	13883091	13883094	.	+	.	Parent=repeat_region50
seq0	LTRharvest	LTR_retrotransposon	13883095	13890935	.	+	.	ID=LTR_retrotransposon50;Parent=repeat_region50;ltr_similarity=95.31;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13883095	13884201	.	+	.	Parent=LTR_retrotransposon50
seq0	LTRdigest	protein_match	13885047	13885335	1.6e-29	+	.	Parent=LTR_retrotransposon50;reading_frame=2;name=Retrotrans_gag
seq0	LTRdigest	protein_match	13886250	13886730	1.5e-34	+	.	Parent=LTR_retrotransposon50;reading_frame=2;name=RVT_1
seq0	LTRdigest	protein_match	13887843	13888170	2.9e-16	+	.	Parent=LTR_retrotransposon50;reading_frame=2;name=rve
seq0	LTRdigest	RR_tract	13889797	13889805	.	+	.	Parent=LTR_retrotransposon50
seq0	LTRharvest	long_terminal_repeat	13889807	13890935	.	+	.	Parent=LTR_retrotransposon50
seq0	LTRharvest	target_site_duplication	13890936	13890939	.	+	.	Parent=repeat_region50
###
seq0	LTRharvest	repeat_region	13912837	13919014	.	+	.	ID=repeat_region51
seq0	LTRharvest	target_site_duplication	13912837	13912840	.	+	.	Parent=repeat_region51
seq0	LTRharvest	LTR_retrotransposon	13912841	13919010	.	+	.	ID=LTR_retrotransposon51;Parent=repeat_region51;ltr_similarity=92.08;seq_number=0
seq0	LTRharvest	long_terminal_repeat	13912841	13913379	.	+	.	Parent=LTR_retrotransposon51
seq0	LTRdigest	primer_binding_site	13913385	13913397	13	+	.	Parent=LTR_retrotransposon51;trna=Arabidopsis_thaliana_tRNA-Asp-GTC-5-1 (chr5.trna27-AspGTC) chr5:11785055-11785129 (+) Asp (GTC) 75 bp Sc: 60.1;trnaoffset=0;pbsoffset=5;edist=0
seq0	LTRharvest	long_terminal_repeat	13918468	13919010	.	+	.	Parent=LTR_retrotransposon51
seq0	LTRharvest	target_site_duplication	13919011	13919014	.	+	.	Parent=repeat_region51
###
seq0	LTRharvest	repeat_region	14019274	14024523	.	+	.	ID=repeat_region52
seq0	LTRharvest	target_site_duplication	14019274	14019277	.	+	.	Parent=repeat_region52
seq0	LTRharvest	LTR_retrotransposon	14019278	14024519	.	+	.	ID=LTR_retrotransposon52;Parent=repeat_region52;ltr_similarity=96.88;seq_number=0
seq0	LTRharvest	long_terminal_repeat	14019278	14019565	.	+	.	Parent=LTR_retrotransposon52
seq0	LTRdigest	protein_match	14020137	14020404	9.2e-16	+	.	Parent=LTR_retrotransposon52;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	protein_match	14021611	14022094	1.7e-33	+	.	Parent=LTR_retrotransposon52;reading_frame=2;name=RVT_1
seq0	LTRdigest	protein_match	14023203	14023485	1.3e-10	+	.	Parent=LTR_retrotransposon52;reading_frame=1;name=rve
seq0	LTRdigest	RR_tract	14024208	14024229	.	+	.	Parent=LTR_retrotransposon52
seq0	LTRharvest	long_terminal_repeat	14024233	14024519	.	+	.	Parent=LTR_retrotransposon52
seq0	LTRharvest	target_site_duplication	14024520	14024523	.	+	.	Parent=repeat_region52
###
seq0	LTRharvest	repeat_region	14179551	14183992	.	?	.	ID=repeat_region53
seq0	LTRharvest	target_site_duplication	14179551	14179554	.	?	.	Parent=repeat_region53
seq0	LTRharvest	LTR_retrotransposon	14179555	14183988	.	?	.	ID=LTR_retrotransposon53;Parent=repeat_region53;ltr_similarity=87.75;seq_number=0
seq0	LTRharvest	long_terminal_repeat	14179555	14179749	.	?	.	Parent=LTR_retrotransposon53
seq0	LTRharvest	long_terminal_repeat	14183785	14183988	.	?	.	Parent=LTR_retrotransposon53
seq0	LTRharvest	target_site_duplication	14183989	14183992	.	?	.	Parent=repeat_region53
###
seq0	LTRharvest	repeat_region	14214736	14225661	.	-	.	ID=repeat_region54
seq0	LTRharvest	target_site_duplication	14214736	14214739	.	-	.	Parent=repeat_region54
seq0	LTRharvest	LTR_retrotransposon	14214740	14225657	.	-	.	ID=LTR_retrotransposon54;Parent=repeat_region54;ltr_similarity=96.14;seq_number=0
seq0	LTRharvest	long_terminal_repeat	14214740	14216423	.	-	.	Parent=LTR_retrotransposon54
seq0	LTRdigest	protein_match	14223154	14223373	9e-16	-	.	Parent=LTR_retrotransposon54;reading_frame=1;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	14223976	14225657	.	-	.	Parent=LTR_retrotransposon54
seq0	LTRharvest	target_site_duplication	14225658	14225661	.	-	.	Parent=repeat_region54
###
seq0	LTRharvest	repeat_region	14282114	14286795	.	-	.	ID=repeat_region55
seq0	LTRharvest	target_site_duplication	14282114	14282117	.	-	.	Parent=repeat_region55
seq0	LTRharvest	LTR_retrotransposon	14282118	14286791	.	-	.	ID=LTR_retrotransposon55;Parent=repeat_region55;ltr_similarity=92.55;seq_number=0
seq0	LTRharvest	long_terminal_repeat	14282118	14282721	.	-	.	Parent=LTR_retrotransposon55
seq0	LTRdigest	RR_tract	14282734	14282741	.	-	.	Parent=LTR_retrotransposon55
seq0	LTRdigest	primer_binding_site	14286186	14286200	15	-	.	Parent=LTR_retrotransposon55;trna=Arabidopsis_thaliana_tRNA-Lys-TTT-1-1 (chr1.trna180-LysTTT) chr1:29833117-29833188 (+) Lys (TTT) 72 bp Sc: 87.3;trnaoffset=0;pbsoffset=1;edist=0
seq0	LTRharvest	long_terminal_repeat	14286202	14286791	.	-	.	Parent=LTR_retrotransposon55
seq0	LTRharvest	target_site_duplication	14286792	14286795	.	-	.	Parent=repeat_region55
###
seq0	LTRharvest	repeat_region	14745958	14750825	.	-	.	ID=repeat_region56
seq0	LTRharvest	target_site_duplication	14745958	14745961	.	-	.	Parent=repeat_region56
seq0	LTRharvest	LTR_retrotransposon	14745962	14750821	.	-	.	ID=LTR_retrotransposon56;Parent=repeat_region56;ltr_similarity=84.36;seq_number=0
seq0	LTRharvest	long_terminal_repeat	14745962	14746236	.	-	.	Parent=LTR_retrotransposon56
seq0	LTRdigest	protein_match	14748147	14748339	7.3e-10	-	.	Parent=LTR_retrotransposon56;reading_frame=1;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	14750553	14750821	.	-	.	Parent=LTR_retrotransposon56
seq0	LTRharvest	target_site_duplication	14750822	14750825	.	-	.	Parent=repeat_region56
###
seq0	LTRharvest	repeat_region	15610246	15615960	.	-	.	ID=repeat_region57
seq0	LTRharvest	target_site_duplication	15610246	15610249	.	-	.	Parent=repeat_region57
seq0	LTRharvest	LTR_retrotransposon	15610250	15615956	.	-	.	ID=LTR_retrotransposon57;Parent=repeat_region57;ltr_similarity=94.44;seq_number=0
seq0	LTRharvest	long_terminal_repeat	15610250	15610590	.	-	.	Parent=LTR_retrotransposon57
seq0	LTRdigest	RR_tract	15610563	15610572	.	-	.	Parent=LTR_retrotransposon57
seq0	LTRdigest	protein_match	15613213	15613543	5.8e-14	-	.	Parent=LTR_retrotransposon57;reading_frame=1;name=rve
seq0	LTRharvest	long_terminal_repeat	15615615	15615956	.	-	.	Parent=LTR_retrotransposon57
seq0	LTRharvest	target_site_duplication	15615957	15615960	.	-	.	Parent=repeat_region57
###
seq0	LTRharvest	repeat_region	16012597	16019704	.	-	.	ID=repeat_region58
seq0	LTRharvest	target_site_duplication	16012597	16012600	.	-	.	Parent=repeat_region58
seq0	LTRharvest	LTR_retrotransposon	16012601	16019700	.	-	.	ID=LTR_retrotransposon58;Parent=repeat_region58;ltr_similarity=97.13;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16012601	16013156	.	-	.	Parent=LTR_retrotransposon58
seq0	LTRdigest	protein_match	16015270	16015597	1.4e-16	-	.	Parent=LTR_retrotransposon58;reading_frame=2;name=rve
seq0	LTRdigest	protein_match	16016710	16017190	7.5e-30	-	.	Parent=LTR_retrotransposon58;reading_frame=2;name=RVT_1
seq0	LTRdigest	protein_match	16018025	16018313	2.6e-28	-	.	Parent=LTR_retrotransposon58;reading_frame=1;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	16019143	16019700	.	-	.	Parent=LTR_retrotransposon58
seq0	LTRharvest	target_site_duplication	16019701	16019704	.	-	.	Parent=repeat_region58
###
seq0	LTRharvest	repeat_region	16117813	16124071	.	+	.	ID=repeat_region59
seq0	LTRharvest	target_site_duplication	16117813	16117816	.	+	.	Parent=repeat_region59
seq0	LTRharvest	LTR_retrotransposon	16117817	16124067	.	+	.	ID=LTR_retrotransposon59;Parent=repeat_region59;ltr_similarity=97.28;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16117817	16118368	.	+	.	Parent=LTR_retrotransposon59
seq0	LTRdigest	RR_tract	16123512	16123524	.	+	.	Parent=LTR_retrotransposon59
seq0	LTRharvest	long_terminal_repeat	16123522	16124067	.	+	.	Parent=LTR_retrotransposon59
seq0	LTRharvest	target_site_duplication	16124068	16124071	.	+	.	Parent=repeat_region59
###
seq0	LTRharvest	repeat_region	16176832	16181682	.	+	.	ID=repeat_region60
seq0	LTRharvest	target_site_duplication	16176832	16176835	.	+	.	Parent=repeat_region60
seq0	LTRharvest	LTR_retrotransposon	16176836	16181678	.	+	.	ID=LTR_retrotransposon60;Parent=repeat_region60;ltr_similarity=85.51;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16176836	16177049	.	+	.	Parent=LTR_retrotransposon60
seq0	LTRdigest	protein_match	16178817	16179162	2e-20	+	.	Parent=LTR_retrotransposon60;reading_frame=1;name=rve
seq0	LTRharvest	long_terminal_repeat	16181467	16181678	.	+	.	Parent=LTR_retrotransposon60
seq0	LTRharvest	target_site_duplication	16181679	16181682	.	+	.	Parent=repeat_region60
###
seq0	LTRharvest	repeat_region	16387787	16398196	.	+	.	ID=repeat_region61
seq0	LTRharvest	target_site_duplication	16387787	16387792	.	+	.	Parent=repeat_region61
seq0	LTRharvest	LTR_retrotransposon	16387793	16398190	.	+	.	ID=LTR_retrotransposon61;Parent=repeat_region61;ltr_similarity=89.04;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16387793	16388151	.	+	.	Parent=LTR_retrotransposon61
seq0	LTRdigest	protein_match	16390092	16390575	6.1e-27	+	.	Parent=LTR_retrotransposon61;reading_frame=1;name=RVT_1
seq0	LTRdigest	protein_match	16391627	16391954	1.4e-10	+	.	Parent=LTR_retrotransposon61;reading_frame=0;name=rve
seq0	LTRharvest	long_terminal_repeat	16397817	16398190	.	+	.	Parent=LTR_retrotransposon61
seq0	LTRharvest	target_site_duplication	16398191	16398196	.	+	.	Parent=repeat_region61
###
seq0	LTRharvest	repeat_region	16537635	16548765	.	?	.	ID=repeat_region62
seq0	LTRharvest	target_site_duplication	16537635	16537639	.	?	.	Parent=repeat_region62
seq0	LTRharvest	LTR_retrotransposon	16537640	16548760	.	?	.	ID=LTR_retrotransposon62;Parent=repeat_region62;ltr_similarity=85.80;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16537640	16537792	.	?	.	Parent=LTR_retrotransposon62
seq0	LTRharvest	long_terminal_repeat	16548599	16548760	.	?	.	Parent=LTR_retrotransposon62
seq0	LTRharvest	target_site_duplication	16548761	16548765	.	?	.	Parent=repeat_region62
###
seq0	LTRharvest	repeat_region	16551716	16557074	.	-	.	ID=repeat_region63
seq0	LTRharvest	target_site_duplication	16551716	16551720	.	-	.	Parent=repeat_region63
seq0	LTRharvest	LTR_retrotransposon	16551721	16557069	.	-	.	ID=LTR_retrotransposon63;Parent=repeat_region63;ltr_similarity=96.50;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16551721	16552120	.	-	.	Parent=LTR_retrotransposon63
seq0	LTRdigest	protein_match	16554673	16554841	4.7e-16	-	.	Parent=LTR_retrotransposon63;reading_frame=2;name=rve
seq0	LTRharvest	long_terminal_repeat	16556671	16557069	.	-	.	Parent=LTR_retrotransposon63
seq0	LTRharvest	target_site_duplication	16557070	16557074	.	-	.	Parent=repeat_region63
###
seq0	LTRharvest	repeat_region	16569866	16575244	.	-	.	ID=repeat_region64
seq0	LTRharvest	target_site_duplication	16569866	16569869	.	-	.	Parent=repeat_region64
seq0	LTRharvest	LTR_retrotransposon	16569870	16575240	.	-	.	ID=LTR_retrotransposon64;Parent=repeat_region64;ltr_similarity=96.68;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16569870	16570797	.	-	.	Parent=LTR_retrotransposon64
seq0	LTRdigest	protein_match	16573039	16573381	3.7e-28	-	.	Parent=LTR_retrotransposon64;reading_frame=2;name=rve
seq0	LTRharvest	long_terminal_repeat	16574307	16575240	.	-	.	Parent=LTR_retrotransposon64
seq0	LTRharvest	target_site_duplication	16575241	16575244	.	-	.	Parent=repeat_region64
###
seq0	LTRharvest	repeat_region	16626032	16637238	.	-	.	ID=repeat_region65
seq0	LTRharvest	target_site_duplication	16626032	16626035	.	-	.	Parent=repeat_region65
seq0	LTRharvest	LTR_retrotransposon	16626036	16637234	.	-	.	ID=LTR_retrotransposon65;Parent=repeat_region65;ltr_similarity=96.19;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16626036	16626560	.	-	.	Parent=LTR_retrotransposon65
seq0	LTRdigest	protein_match	16631154	16631424	1.1e-13	-	.	Parent=LTR_retrotransposon65;reading_frame=2;name=rve
seq0	LTRdigest	protein_match	16632251	16632491	1.1e-06	-	.	Parent=LTR_retrotransposon65;reading_frame=0;name=RNase_H
seq0	LTRdigest	protein_match	16633193	16633424	2e-16	-	.	Parent=LTR_retrotransposon65;reading_frame=0;name=RVT_1
seq0	LTRdigest	protein_match	16635310	16635520	2.4e-09	-	.	Parent=LTR_retrotransposon65;reading_frame=1;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	16636715	16637234	.	-	.	Parent=LTR_retrotransposon65
seq0	LTRharvest	target_site_duplication	16637235	16637238	.	-	.	Parent=repeat_region65
###
seq0	LTRharvest	repeat_region	16638789	16645562	.	-	.	ID=repeat_region66
seq0	LTRharvest	target_site_duplication	16638789	16638792	.	-	.	Parent=repeat_region66
seq0	LTRharvest	LTR_retrotransposon	16638793	16645558	.	-	.	ID=LTR_retrotransposon66;Parent=repeat_region66;ltr_similarity=93.52;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16638793	16639008	.	-	.	Parent=LTR_retrotransposon66
seq0	LTRdigest	RR_tract	16639024	16639032	.	-	.	Parent=LTR_retrotransposon66
seq0	LTRdigest	protein_match	16641415	16641751	7.4e-22	-	.	Parent=LTR_retrotransposon66;reading_frame=0;name=rve
seq0	LTRdigest	protein_match	16644767	16644980	6.8e-06	-	.	Parent=LTR_retrotransposon66;reading_frame=2;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	16645343	16645558	.	-	.	Parent=LTR_retrotransposon66
seq0	LTRharvest	target_site_duplication	16645559	16645562	.	-	.	Parent=repeat_region66
###
seq0	LTRharvest	repeat_region	16674904	16683332	.	+	.	ID=repeat_region67
seq0	LTRharvest	target_site_duplication	16674904	16674907	.	+	.	Parent=repeat_region67
seq0	LTRharvest	LTR_retrotransposon	16674908	16683328	.	+	.	ID=LTR_retrotransposon67;Parent=repeat_region67;ltr_similarity=92.93;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16674908	16675277	.	+	.	Parent=LTR_retrotransposon67
seq0	LTRdigest	protein_match	16677941	16678253	3.6e-16	+	.	Parent=LTR_retrotransposon67;reading_frame=0;name=rve
seq0	LTRdigest	RR_tract	16682932	16682945	.	+	.	Parent=LTR_retrotransposon67
seq0	LTRharvest	long_terminal_repeat	16682947	16683328	.	+	.	Parent=LTR_retrotransposon67
seq0	LTRharvest	target_site_duplication	16683329	16683332	.	+	.	Parent=repeat_region67
###
seq0	LTRharvest	repeat_region	16853313	16858044	.	-	.	ID=repeat_region68
seq0	LTRharvest	target_site_duplication	16853313	16853316	.	-	.	Parent=repeat_region68
seq0	LTRharvest	LTR_retrotransposon	16853317	16858040	.	-	.	ID=LTR_retrotransposon68;Parent=repeat_region68;ltr_similarity=94.93;seq_number=0
seq0	LTRharvest	long_terminal_repeat	16853317	16853448	.	-	.	Parent=LTR_retrotransposon68
seq0	LTRdigest	protein_match	16855921	16856254	2.9e-24	-	.	Parent=LTR_retrotransposon68;reading_frame=1;name=rve
seq0	LTRdigest	protein_match	16857283	16857568	3.2e-14	-	.	Parent=LTR_retrotransposon68;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	primer_binding_site	16857888	16857898	2.64	-	.	Parent=LTR_retrotransposon68;trna=Arabidopsis_thaliana_tRNA-Ala-TGC-4-1 (chr3.trna60-AlaTGC) chr3:23036880-23036952 (+) Ala (TGC) 73 bp Sc: 63.7;trnaoffset=3;pbsoffset=4;edist=1
seq0	LTRharvest	long_terminal_repeat	16857903	16858040	.	-	.	Parent=LTR_retrotransposon68
seq0	LTRharvest	target_site_duplication	16858041	16858044	.	-	.	Parent=repeat_region68
###
seq0	LTRharvest	repeat_region	17023911	17029262	.	-	.	ID=repeat_region69
seq0	LTRharvest	target_site_duplication	17023911	17023915	.	-	.	Parent=repeat_region69
seq0	LTRharvest	LTR_retrotransposon	17023916	17029257	.	-	.	ID=LTR_retrotransposon69;Parent=repeat_region69;ltr_similarity=96.80;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17023916	17024415	.	-	.	Parent=LTR_retrotransposon69
seq0	LTRdigest	protein_match	17026835	17027180	2.2e-23	-	.	Parent=LTR_retrotransposon69;reading_frame=1;name=rve
seq0	LTRdigest	protein_match	17028198	17028435	5.9e-08	-	.	Parent=LTR_retrotransposon69;reading_frame=0;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	17028758	17029257	.	-	.	Parent=LTR_retrotransposon69
seq0	LTRharvest	target_site_duplication	17029258	17029262	.	-	.	Parent=repeat_region69
###
seq0	LTRharvest	repeat_region	17054986	17060027	.	+	.	ID=repeat_region70
seq0	LTRharvest	target_site_duplication	17054986	17054989	.	+	.	Parent=repeat_region70
seq0	LTRharvest	LTR_retrotransposon	17054990	17060023	.	+	.	ID=LTR_retrotransposon70;Parent=repeat_region70;ltr_similarity=84.05;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17054990	17055151	.	+	.	Parent=LTR_retrotransposon70
seq0	LTRdigest	protein_match	17055726	17056056	5.2e-16	+	.	Parent=LTR_retrotransposon70;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	protein_match	17057263	17057590	3.4e-19	+	.	Parent=LTR_retrotransposon70;reading_frame=2;name=rve
seq0	LTRharvest	long_terminal_repeat	17059861	17060023	.	+	.	Parent=LTR_retrotransposon70
seq0	LTRharvest	target_site_duplication	17060024	17060027	.	+	.	Parent=repeat_region70
###
seq0	LTRharvest	repeat_region	17156577	17161063	.	?	.	ID=repeat_region71
seq0	LTRharvest	target_site_duplication	17156577	17156580	.	?	.	Parent=repeat_region71
seq0	LTRharvest	LTR_retrotransposon	17156581	17161059	.	?	.	ID=LTR_retrotransposon71;Parent=repeat_region71;ltr_similarity=83.90;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17156581	17156689	.	?	.	Parent=LTR_retrotransposon71
seq0	LTRharvest	long_terminal_repeat	17160942	17161059	.	?	.	Parent=LTR_retrotransposon71
seq0	LTRharvest	target_site_duplication	17161060	17161063	.	?	.	Parent=repeat_region71
###
seq0	LTRharvest	repeat_region	17247717	17252584	.	-	.	ID=repeat_region72
seq0	LTRharvest	target_site_duplication	17247717	17247720	.	-	.	Parent=repeat_region72
seq0	LTRharvest	LTR_retrotransposon	17247721	17252580	.	-	.	ID=LTR_retrotransposon72;Parent=repeat_region72;ltr_similarity=96.15;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17247721	17247849	.	-	.	Parent=LTR_retrotransposon72
seq0	LTRdigest	protein_match	17250317	17250644	1.7e-20	-	.	Parent=LTR_retrotransposon72;reading_frame=1;name=rve
seq0	LTRdigest	protein_match	17251730	17251982	5.2e-08	-	.	Parent=LTR_retrotransposon72;reading_frame=1;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	17252451	17252580	.	-	.	Parent=LTR_retrotransposon72
seq0	LTRharvest	target_site_duplication	17252581	17252584	.	-	.	Parent=repeat_region72
###
seq0	LTRharvest	repeat_region	17255281	17265294	.	+	.	ID=repeat_region73
seq0	LTRharvest	target_site_duplication	17255281	17255284	.	+	.	Parent=repeat_region73
seq0	LTRharvest	LTR_retrotransposon	17255285	17265290	.	+	.	ID=LTR_retrotransposon73;Parent=repeat_region73;ltr_similarity=97.85;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17255285	17255701	.	+	.	Parent=LTR_retrotransposon73
seq0	LTRdigest	primer_binding_site	17255705	17255720	16	+	.	Parent=LTR_retrotransposon73;trna=Arabidopsis_thaliana_tRNA-Asn-GTT-3-1 (chr1.trna168-AsnGTT) chr1:26049478-26049551 (+) Asn (GTT) 74 bp Sc: 81.8;trnaoffset=0;pbsoffset=3;edist=0
seq0	LTRdigest	protein_match	17256549	17256825	3.2e-23	+	.	Parent=LTR_retrotransposon73;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	protein_match	17258370	17258853	1.2e-26	+	.	Parent=LTR_retrotransposon73;reading_frame=1;name=RVT_1
seq0	LTRdigest	protein_match	17260473	17260803	8.7e-21	+	.	Parent=LTR_retrotransposon73;reading_frame=1;name=rve
seq0	LTRharvest	long_terminal_repeat	17264872	17265290	.	+	.	Parent=LTR_retrotransposon73
seq0	LTRharvest	target_site_duplication	17265291	17265294	.	+	.	Parent=repeat_region73
###
seq0	LTRharvest	repeat_region	17520592	17525130	.	+	.	ID=repeat_region74
seq0	LTRharvest	target_site_duplication	17520592	17520595	.	+	.	Parent=repeat_region74
seq0	LTRharvest	LTR_retrotransposon	17520596	17525126	.	+	.	ID=LTR_retrotransposon74;Parent=repeat_region74;ltr_similarity=97.56;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17520596	17520758	.	+	.	Parent=LTR_retrotransposon74
seq0	LTRdigest	protein_match	17521253	17521577	7.2e-25	+	.	Parent=LTR_retrotransposon74;reading_frame=0;name=Retrotrans_gag
seq0	LTRdigest	protein_match	17522445	17522769	3.4e-19	+	.	Parent=LTR_retrotransposon74;reading_frame=1;name=rve
seq0	LTRharvest	long_terminal_repeat	17524963	17525126	.	+	.	Parent=LTR_retrotransposon74
seq0	LTRharvest	target_site_duplication	17525127	17525130	.	+	.	Parent=repeat_region74
###
seq0	LTRharvest	repeat_region	17528663	17536143	.	-	.	ID=repeat_region75
seq0	LTRharvest	target_site_duplication	17528663	17528666	.	-	.	Parent=repeat_region75
seq0	LTRharvest	LTR_retrotransposon	17528667	17536139	.	-	.	ID=LTR_retrotransposon75;Parent=repeat_region75;ltr_similarity=98.49;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17528667	17529197	.	-	.	Parent=LTR_retrotransposon75
seq0	LTRdigest	primer_binding_site	17535589	17535604	16	-	.	Parent=LTR_retrotransposon75;trna=Arabidopsis_thaliana_tRNA-Lys-CTT-2-3 (chr1.trna225-LysCTT) chr1:5518062-5518134 (-) Lys (CTT) 73 bp Sc: 83.1;trnaoffset=0;pbsoffset=5;edist=0
seq0	LTRharvest	long_terminal_repeat	17535610	17536139	.	-	.	Parent=LTR_retrotransposon75
seq0	LTRharvest	target_site_duplication	17536140	17536143	.	-	.	Parent=repeat_region75
###
seq0	LTRharvest	repeat_region	17574994	17592216	.	?	.	ID=repeat_region76
seq0	LTRharvest	target_site_duplication	17574994	17574997	.	?	.	Parent=repeat_region76
seq0	LTRharvest	LTR_retrotransposon	17574998	17592212	.	?	.	ID=LTR_retrotransposon76;Parent=repeat_region76;ltr_similarity=80.65;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17574998	17575245	.	?	.	Parent=LTR_retrotransposon76
seq0	LTRharvest	long_terminal_repeat	17591982	17592212	.	?	.	Parent=LTR_retrotransposon76
seq0	LTRharvest	target_site_duplication	17592213	17592216	.	?	.	Parent=repeat_region76
###
seq0	LTRharvest	repeat_region	17606456	17612340	.	?	.	ID=repeat_region77
seq0	LTRharvest	target_site_duplication	17606456	17606459	.	?	.	Parent=repeat_region77
seq0	LTRharvest	LTR_retrotransposon	17606460	17612336	.	?	.	ID=LTR_retrotransposon77;Parent=repeat_region77;ltr_similarity=93.83;seq_number=0
seq0	LTRharvest	long_terminal_repeat	17606460	17606778	.	?	.	Parent=LTR_retrotransposon77
seq0	LTRharvest	long_terminal_repeat	17612013	17612336	.	?	.	Parent=LTR_retrotransposon77
seq0	LTRharvest	target_site_duplication	17612337	17612340	.	?	.	Parent=repeat_region77
###
seq0	LTRharvest	repeat_region	18198311	18206602	.	?	.	ID=repeat_region78
seq0	LTRharvest	target_site_duplication	18198311	18198314	.	?	.	Parent=repeat_region78
seq0	LTRharvest	LTR_retrotransposon	18198315	18206598	.	?	.	ID=LTR_retrotransposon78;Parent=repeat_region78;ltr_similarity=88.82;seq_number=0
seq0	LTRharvest	long_terminal_repeat	18198315	18198941	.	?	.	Parent=LTR_retrotransposon78
seq0	LTRharvest	long_terminal_repeat	18205955	18206598	.	?	.	Parent=LTR_retrotransposon78
seq0	LTRharvest	target_site_duplication	18206599	18206602	.	?	.	Parent=repeat_region78
###
seq0	LTRharvest	repeat_region	18552989	18557999	.	-	.	ID=repeat_region79
seq0	LTRharvest	target_site_duplication	18552989	18552992	.	-	.	Parent=repeat_region79
seq0	LTRharvest	LTR_retrotransposon	18552993	18557995	.	-	.	ID=LTR_retrotransposon79;Parent=repeat_region79;ltr_similarity=83.78;seq_number=0
seq0	LTRharvest	long_terminal_repeat	18552993	18553100	.	-	.	Parent=LTR_retrotransposon79
seq0	LTRdigest	RR_tract	18553087	18553106	.	-	.	Parent=LTR_retrotransposon79
seq0	LTRharvest	long_terminal_repeat	18557885	18557995	.	-	.	Parent=LTR_retrotransposon79
seq0	LTRharvest	target_site_duplication	18557996	18557999	.	-	.	Parent=repeat_region79
###
seq0	LTRharvest	repeat_region	18639843	18648174	.	?	.	ID=repeat_region80
seq0	LTRharvest	target_site_duplication	18639843	18639848	.	?	.	Parent=repeat_region80
seq0	LTRharvest	LTR_retrotransposon	18639849	18648168	.	?	.	ID=LTR_retrotransposon80;Parent=repeat_region80;ltr_similarity=86.80;seq_number=0
seq0	LTRharvest	long_terminal_repeat	18639849	18640666	.	?	.	Parent=LTR_retrotransposon80
seq0	LTRharvest	long_terminal_repeat	18647359	18648168	.	?	.	Parent=LTR_retrotransposon80
seq0	LTRharvest	target_site_duplication	18648169	18648174	.	?	.	Parent=repeat_region80
###
seq0	LTRharvest	repeat_region	18962091	18971500	.	-	.	ID=repeat_region81
seq0	LTRharvest	target_site_duplication	18962091	18962094	.	-	.	Parent=repeat_region81
seq0	LTRharvest	LTR_retrotransposon	18962095	18971496	.	-	.	ID=LTR_retrotransposon81;Parent=repeat_region81;ltr_similarity=97.94;seq_number=0
seq0	LTRharvest	long_terminal_repeat	18962095	18962530	.	-	.	Parent=LTR_retrotransposon81
seq0	LTRdigest	protein_match	18966106	18966355	7.5e-12	-	.	Parent=LTR_retrotransposon81;reading_frame=2;name=rve
seq0	LTRdigest	protein_match	18967992	18968208	7.4e-11	-	.	Parent=LTR_retrotransposon81;reading_frame=0;name=RVT_1
seq0	LTRdigest	protein_match	18968192	18968408	2.7e-08	-	.	Parent=LTR_retrotransposon81;reading_frame=1;name=RVT_1
seq0	LTRdigest	protein_match	18969944	18970220	2.8e-18	-	.	Parent=LTR_retrotransposon81;reading_frame=1;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	18971065	18971496	.	-	.	Parent=LTR_retrotransposon81
seq0	LTRharvest	target_site_duplication	18971497	18971500	.	-	.	Parent=repeat_region81
###
seq0	LTRharvest	repeat_region	18996881	19001835	.	?	.	ID=repeat_region82
seq0	LTRharvest	target_site_duplication	18996881	18996884	.	?	.	Parent=repeat_region82
seq0	LTRharvest	LTR_retrotransposon	18996885	19001831	.	?	.	ID=LTR_retrotransposon82;Parent=repeat_region82;ltr_similarity=88.41;seq_number=0
seq0	LTRharvest	long_terminal_repeat	18996885	18997156	.	?	.	Parent=LTR_retrotransposon82
seq0	LTRharvest	long_terminal_repeat	19001556	19001831	.	?	.	Parent=LTR_retrotransposon82
seq0	LTRharvest	target_site_duplication	19001832	19001835	.	?	.	Parent=repeat_region82
###
seq0	LTRharvest	repeat_region	20085158	20090243	.	+	.	ID=repeat_region83
seq0	LTRharvest	target_site_duplication	20085158	20085161	.	+	.	Parent=repeat_region83
seq0	LTRharvest	LTR_retrotransposon	20085162	20090239	.	+	.	ID=LTR_retrotransposon83;Parent=repeat_region83;ltr_similarity=95.59;seq_number=0
seq0	LTRharvest	long_terminal_repeat	20085162	20085487	.	+	.	Parent=LTR_retrotransposon83
seq0	LTRdigest	protein_match	20085866	20086103	7.6e-07	+	.	Parent=LTR_retrotransposon83;reading_frame=2;name=Retrotrans_gag
seq0	LTRdigest	protein_match	20087120	20087465	4.7e-25	+	.	Parent=LTR_retrotransposon83;reading_frame=2;name=rve
seq0	LTRharvest	long_terminal_repeat	20089900	20090239	.	+	.	Parent=LTR_retrotransposon83
seq0	LTRharvest	target_site_duplication	20090240	20090243	.	+	.	Parent=repeat_region83
###
seq0	LTRharvest	repeat_region	21244319	21249205	.	-	.	ID=repeat_region84
seq0	LTRharvest	target_site_duplication	21244319	21244322	.	-	.	Parent=repeat_region84
seq0	LTRharvest	LTR_retrotransposon	21244323	21249201	.	-	.	ID=LTR_retrotransposon84;Parent=repeat_region84;ltr_similarity=93.15;seq_number=0
seq0	LTRharvest	long_terminal_repeat	21244323	21244468	.	-	.	Parent=LTR_retrotransposon84
seq0	LTRdigest	protein_match	21246913	21247246	4.8e-21	-	.	Parent=LTR_retrotransposon84;reading_frame=2;name=rve
seq0	LTRdigest	protein_match	21248347	21248587	4.5e-10	-	.	Parent=LTR_retrotransposon84;reading_frame=2;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	21249061	21249201	.	-	.	Parent=LTR_retrotransposon84
seq0	LTRharvest	target_site_duplication	21249202	21249205	.	-	.	Parent=repeat_region84
###
seq0	LTRharvest	repeat_region	21318899	21325513	.	+	.	ID=repeat_region85
seq0	LTRharvest	target_site_duplication	21318899	21318902	.	+	.	Parent=repeat_region85
seq0	LTRharvest	LTR_retrotransposon	21318903	21325509	.	+	.	ID=LTR_retrotransposon85;Parent=repeat_region85;ltr_similarity=91.25;seq_number=0
seq0	LTRharvest	long_terminal_repeat	21318903	21319496	.	+	.	Parent=LTR_retrotransposon85
seq0	LTRdigest	RR_tract	21324920	21324933	.	+	.	Parent=LTR_retrotransposon85
seq0	LTRharvest	long_terminal_repeat	21324929	21325509	.	+	.	Parent=LTR_retrotransposon85
seq0	LTRharvest	target_site_duplication	21325510	21325513	.	+	.	Parent=repeat_region85
###
seq0	LTRharvest	repeat_region	21346157	21351046	.	-	.	ID=repeat_region86
seq0	LTRharvest	target_site_duplication	21346157	21346161	.	-	.	Parent=repeat_region86
seq0	LTRharvest	LTR_retrotransposon	21346162	21351041	.	-	.	ID=LTR_retrotransposon86;Parent=repeat_region86;ltr_similarity=99.46;seq_number=0
seq0	LTRharvest	long_terminal_repeat	21346162	21346346	.	-	.	Parent=LTR_retrotransposon86
seq0	LTRdigest	protein_match	21348720	21349050	3.3e-24	-	.	Parent=LTR_retrotransposon86;reading_frame=2;name=rve
seq0	LTRdigest	protein_match	21350196	21350493	8.7e-11	-	.	Parent=LTR_retrotransposon86;reading_frame=2;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	21350857	21351041	.	-	.	Parent=LTR_retrotransposon86
seq0	LTRharvest	target_site_duplication	21351042	21351046	.	-	.	Parent=repeat_region86
###
seq0	LTRharvest	repeat_region	21438247	21442653	.	-	.	ID=repeat_region87
seq0	LTRharvest	target_site_duplication	21438247	21438250	.	-	.	Parent=repeat_region87
seq0	LTRharvest	LTR_retrotransposon	21438251	21442649	.	-	.	ID=LTR_retrotransposon87;Parent=repeat_region87;ltr_similarity=79.69;seq_number=0
seq0	LTRharvest	long_terminal_repeat	21438251	21438544	.	-	.	Parent=LTR_retrotransposon87
seq0	LTRdigest	RR_tract	21438568	21438575	.	-	.	Parent=LTR_retrotransposon87
seq0	LTRharvest	long_terminal_repeat	21442330	21442649	.	-	.	Parent=LTR_retrotransposon87
seq0	LTRharvest	target_site_duplication	21442650	21442653	.	-	.	Parent=repeat_region87
###
seq0	LTRharvest	repeat_region	21930872	21937602	.	?	.	ID=repeat_region88
seq0	LTRharvest	target_site_duplication	21930872	21930875	.	?	.	Parent=repeat_region88
seq0	LTRharvest	LTR_retrotransposon	21930876	21937598	.	?	.	ID=LTR_retrotransposon88;Parent=repeat_region88;ltr_similarity=85.94;seq_number=0
seq0	LTRharvest	long_terminal_repeat	21930876	21931066	.	?	.	Parent=LTR_retrotransposon88
seq0	LTRharvest	long_terminal_repeat	21937407	21937598	.	?	.	Parent=LTR_retrotransposon88
seq0	LTRharvest	target_site_duplication	21937599	21937602	.	?	.	Parent=repeat_region88
###
seq0	LTRharvest	repeat_region	21947268	21951938	.	?	.	ID=repeat_region89
seq0	LTRharvest	target_site_duplication	21947268	21947271	.	?	.	Parent=repeat_region89
seq0	LTRharvest	LTR_retrotransposon	21947272	21951934	.	?	.	ID=LTR_retrotransposon89;Parent=repeat_region89;ltr_similarity=82.89;seq_number=0
seq0	LTRharvest	long_terminal_repeat	21947272	21947415	.	?	.	Parent=LTR_retrotransposon89
seq0	LTRharvest	long_terminal_repeat	21951783	21951934	.	?	.	Parent=LTR_retrotransposon89
seq0	LTRharvest	target_site_duplication	21951935	21951938	.	?	.	Parent=repeat_region89
###
seq0	LTRharvest	repeat_region	22100639	22105333	.	-	.	ID=repeat_region90
seq0	LTRharvest	target_site_duplication	22100639	22100642	.	-	.	Parent=repeat_region90
seq0	LTRharvest	LTR_retrotransposon	22100643	22105329	.	-	.	ID=LTR_retrotransposon90;Parent=repeat_region90;ltr_similarity=97.32;seq_number=0
seq0	LTRharvest	long_terminal_repeat	22100643	22100754	.	-	.	Parent=LTR_retrotransposon90
seq0	LTRdigest	protein_match	22103220	22103556	8.8e-24	-	.	Parent=LTR_retrotransposon90;reading_frame=0;name=rve
seq0	LTRdigest	protein_match	22104576	22104840	1.1e-08	-	.	Parent=LTR_retrotransposon90;reading_frame=0;name=Retrotrans_gag
seq0	LTRharvest	long_terminal_repeat	22105218	22105329	.	-	.	Parent=LTR_retrotransposon90
seq0	LTRharvest	target_site_duplication	22105330	22105333	.	-	.	Parent=repeat_region90
###
seq0	LTRharvest	repeat_region	22272947	22280407	.	-	.	ID=repeat_region91
seq0	LTRharvest	target_site_duplication	22272947	22272950	.	-	.	Parent=repeat_region91
seq0	LTRharvest	LTR_retrotransposon	22272951	22280403	.	-	.	ID=LTR_retrotransposon91;Parent=repeat_region91;ltr_similarity=88.74;seq_number=0
seq0	LTRharvest	long_terminal_repeat	22272951	22273181	.	-	.	Parent=LTR_retrotransposon91
seq0	LTRdigest	RR_tract	22273154	22273163	.	-	.	Parent=LTR_retrotransposon91
seq0	LTRharvest	long_terminal_repeat	22280181	22280403	.	-	.	Parent=LTR_retrotransposon91
seq0	LTRharvest	target_site_duplication	22280404	22280407	.	-	.	Parent=repeat_region91
###
seq0	LTRharvest	repeat_region	22619334	22624559	.	?	.	ID=repeat_region92
seq0	LTRharvest	target_site_duplication	22619334	22619337	.	?	.	Parent=repeat_region92
seq0	LTRharvest	LTR_retrotransposon	22619338	22624555	.	?	.	ID=LTR_retrotransposon92;Parent=repeat_region92;ltr_similarity=90.46;seq_number=0
seq0	LTRharvest	long_terminal_repeat	22619338	22619723	.	?	.	Parent=LTR_retrotransposon92
seq0	LTRharvest	long_terminal_repeat	22624147	22624555	.	?	.	Parent=LTR_retrotransposon92
seq0	LTRharvest	target_site_duplication	22624556	22624559	.	?	.	Parent=repeat_region92
###
seq0	LTRharvest	repeat_region	22831586	22837370	.	+	.	ID=repeat_region93
seq0	LTRharvest	target_site_duplication	22831586	22831589	.	+	.	Parent=repeat_region93
seq0	LTRharvest	LTR_retrotransposon	22831590	22837366	.	+	.	ID=LTR_retrotransposon93;Parent=repeat_region93;ltr_similarity=83.95;seq_number=0
seq0	LTRharvest	long_terminal_repeat	22831590	22831751	.	+	.	Parent=LTR_retrotransposon93
seq0	LTRharvest	long_terminal_repeat	22837210	22837366	.	+	.	Parent=LTR_retrotransposon93
seq0	LTRdigest	RR_tract	22837219	22837236	.	+	.	Parent=LTR_retrotransposon93
seq0	LTRharvest	target_site_duplication	22837367	22837370	.	+	.	Parent=repeat_region93
###
seq0	LTRharvest	repeat_region	22941588	22946921	.	?	.	ID=repeat_region94
seq0	LTRharvest	target_site_duplication	22941588	22941591	.	?	.	Parent=repeat_region94
seq0	LTRharvest	LTR_retrotransposon	22941592	22946917	.	?	.	ID=LTR_retrotransposon94;Parent=repeat_region94;ltr_similarity=92.10;seq_number=0
seq0	LTRharvest	long_terminal_repeat	22941592	22942261	.	?	.	Parent=LTR_retrotransposon94
seq0	LTRharvest	long_terminal_repeat	22946247	22946917	.	?	.	Parent=LTR_retrotransposon94
seq0	LTRharvest	target_site_duplication	22946918	22946921	.	?	.	Parent=repeat_region94
###
seq0	LTRharvest	repeat_region	23000651	23008294	.	?	.	ID=repeat_region95
seq0	LTRharvest	target_site_duplication	23000651	23000654	.	?	.	Parent=repeat_region95
seq0	LTRharvest	LTR_retrotransposon	23000655	23008290	.	?	.	ID=LTR_retrotransposon95;Parent=repeat_region95;ltr_similarity=88.11;seq_number=0
seq0	LTRharvest	long_terminal_repeat	23000655	23001268	.	?	.	Parent=LTR_retrotransposon95
seq0	LTRharvest	long_terminal_repeat	23007682	23008290	.	?	.	Parent=LTR_retrotransposon95
seq0	LTRharvest	target_site_duplication	23008291	23008294	.	?	.	Parent=repeat_region95
###
seq0	LTRharvest	repeat_region	23118238	23123219	.	+	.	ID=repeat_region96
seq0	LTRharvest	target_site_duplication	23118238	23118241	.	+	.	Parent=repeat_region96
seq0	LTRharvest	LTR_retrotransposon	23118242	23123215	.	+	.	ID=LTR_retrotransposon96;Parent=repeat_region96;ltr_similarity=96.40;seq_number=0
seq0	LTRharvest	long_terminal_repeat	23118242	23118620	.	+	.	Parent=LTR_retrotransposon96
seq0	LTRdigest	protein_match	23118969	23119182	7.3e-09	+	.	Parent=LTR_retrotransposon96;reading_frame=1;name=Retrotrans_gag
seq0	LTRdigest	protein_match	23120335	23120533	1.2e-15	+	.	Parent=LTR_retrotransposon96;reading_frame=2;name=rve
seq0	LTRdigest	RR_tract	23122827	23122835	.	+	.	Parent=LTR_retrotransposon96
seq0	LTRharvest	long_terminal_repeat	23122827	23123215	.	+	.	Parent=LTR_retrotransposon96
seq0	LTRharvest	target_site_duplication	23123216	23123219	.	+	.	Parent=repeat_region96
###
seq0	LTRharvest	repeat_region	23569992	23575855	.	-	.	ID=repeat_region97
seq0	LTRharvest	target_site_duplication	23569992	23569995	.	-	.	Parent=repeat_region97
seq0	LTRharvest	LTR_retrotransposon	23569996	23575851	.	-	.	ID=LTR_retrotransposon97;Parent=repeat_region97;ltr_similarity=85.64;seq_number=0
seq0	LTRharvest	long_terminal_repeat	23569996	23570197	.	-	.	Parent=LTR_retrotransposon97
seq0	LTRdigest	RR_tract	23570172	23570187	.	-	.	Parent=LTR_retrotransposon97
seq0	LTRharvest	long_terminal_repeat	23575657	23575851	.	-	.	Parent=LTR_retrotransposon97
seq0	LTRharvest	target_site_duplication	23575852	23575855	.	-	.	Parent=repeat_region97
###
seq0	LTRharvest	repeat_region	23646945	23653342	.	-	.	ID=repeat_region98
seq0	LTRharvest	target_site_duplication	23646945	23646948	.	-	.	Parent=repeat_region98
seq0	LTRharvest	LTR_retrotransposon	23646949	23653338	.	-	.	ID=LTR_retrotransposon98;Parent=repeat_region98;ltr_similarity=81.15;seq_number=0
seq0	LTRharvest	long_terminal_repeat	23646949	23647065	.	-	.	Parent=LTR_retrotransposon98
seq0	LTRdigest	RR_tract	23647075	23647096	.	-	.	Parent=LTR_retrotransposon98
seq0	LTRharvest	long_terminal_repeat	23653217	23653338	.	-	.	Parent=LTR_retrotransposon98
seq0	LTRharvest	target_site_duplication	23653339	23653342	.	-	.	Parent=repeat_region98
###
seq0	LTRharvest	repeat_region	24506838	24514623	.	?	.	ID=repeat_region99
seq0	LTRharvest	target_site_duplication	24506838	24506841	.	?	.	Parent=repeat_region99
seq0	LTRharvest	LTR_retrotransposon	24506842	24514619	.	?	.	ID=LTR_retrotransposon99;Parent=repeat_region99;ltr_similarity=85.49;seq_number=0
seq0	LTRharvest	long_terminal_repeat	24506842	24507034	.	?	.	Parent=LTR_retrotransposon99
seq0	LTRharvest	long_terminal_repeat	24514429	24514619	.	?	.	Parent=LTR_retrotransposon99
seq0	LTRharvest	target_site_duplication	24514620	24514623	.	?	.	Parent=repeat_region99
###
seq0	LTRharvest	repeat_region	24873945	24879667	.	-	.	ID=repeat_region100
seq0	LTRharvest	target_site_duplication	24873945	24873948	.	-	.	Parent=repeat_region100
seq0	LTRharvest	LTR_retrotransposon	24873949	24879663	.	-	.	ID=LTR_retrotransposon100;Parent=repeat_region100;ltr_similarity=85.39;seq_number=0
seq0	LTRharvest	long_terminal_repeat	24873949	24874256	.	-	.	Parent=LTR_retrotransposon100
seq0	LTRdigest	RR_tract	24874249	24874257	.	-	.	Parent=LTR_retrotransposon100
seq0	LTRharvest	long_terminal_repeat	24879362	24879663	.	-	.	Parent=LTR_retrotransposon100
seq0	LTRharvest	target_site_duplication	24879664	24879667	.	-	.	Parent=repeat_region100
###
seq0	LTRharvest	repeat_region	24938562	24945905	.	?	.	ID=repeat_region101
seq0	LTRharvest	target_site_duplication	24938562	24938565	.	?	.	Parent=repeat_region101
seq0	LTRharvest	LTR_retrotransposon	24938566	24945901	.	?	.	ID=LTR_retrotransposon101;Parent=repeat_region101;ltr_similarity=88.51;seq_number=0
seq0	LTRharvest	long_terminal_repeat	24938566	24938861	.	?	.	Parent=LTR_retrotransposon101
seq0	LTRharvest	long_terminal_repeat	24945614	24945901	.	?	.	Parent=LTR_retrotransposon101
seq0	LTRharvest	target_site_duplication	24945902	24945905	.	?	.	Parent=repeat_region101
###
seq0	LTRharvest	repeat_region	25265016	25271113	.	?	.	ID=repeat_region102
seq0	LTRharvest	target_site_duplication	25265016	25265019	.	?	.	Parent=repeat_region102
seq0	LTRharvest	LTR_retrotransposon	25265020	25271109	.	?	.	ID=LTR_retrotransposon102;Parent=repeat_region102;ltr_similarity=78.21;seq_number=0
seq0	LTRharvest	long_terminal_repeat	25265020	25265175	.	?	.	Parent=LTR_retrotransposon102
seq0	LTRharvest	long_terminal_repeat	25270960	25271109	.	?	.	Parent=LTR_retrotransposon102
seq0	LTRharvest	target_site_duplication	25271110	25271113	.	?	.	Parent=repeat_region102
###
seq0	LTRharvest	repeat_region	26366604	26371680	.	+	.	ID=repeat_region103
seq0	LTRharvest	target_site_duplication	26366604	26366607	.	+	.	Parent=repeat_region103
seq0	LTRharvest	LTR_retrotransposon	26366608	26371676	.	+	.	ID=LTR_retrotransposon103;Parent=repeat_region103;ltr_similarity=95.75;seq_number=0
seq0	LTRharvest	long_terminal_repeat	26366608	26366819	.	+	.	Parent=LTR_retrotransposon103
seq0	LTRdigest	protein_match	26367405	26367708	2.5e-15	+	.	Parent=LTR_retrotransposon103;reading_frame=2;name=Retrotrans_gag
seq0	LTRdigest	protein_match	26368887	26369223	1.4e-23	+	.	Parent=LTR_retrotransposon103;reading_frame=2;name=rve
seq0	LTRharvest	long_terminal_repeat	26371465	26371676	.	+	.	Parent=LTR_retrotransposon103
seq0	LTRharvest	target_site_duplication	26371677	26371680	.	+	.	Parent=repeat_region103
###
seq0	LTRharvest	repeat_region	27199825	27210851	.	-	.	ID=repeat_region104
seq0	LTRharvest	target_site_duplication	27199825	27199828	.	-	.	Parent=repeat_region104
seq0	LTRharvest	LTR_retrotransposon	27199829	27210847	.	-	.	ID=LTR_retrotransposon104;Parent=repeat_region104;ltr_similarity=83.57;seq_number=0
seq0	LTRharvest	long_terminal_repeat	27199829	27199968	.	-	.	Parent=LTR_retrotransposon104
seq0	LTRdigest	RR_tract	27199981	27199994	.	-	.	Parent=LTR_retrotransposon104
seq0	LTRharvest	long_terminal_repeat	27210713	27210847	.	-	.	Parent=LTR_retrotransposon104
seq0	LTRharvest	target_site_duplication	27210848	27210851	.	-	.	Parent=repeat_region104
###
seq0	LTRharvest	repeat_region	27829433	27835763	.	?	.	ID=repeat_region105
seq0	LTRharvest	target_site_duplication	27829433	27829436	.	?	.	Parent=repeat_region105
seq0	LTRharvest	LTR_retrotransposon	27829437	27835759	.	?	.	ID=LTR_retrotransposon105;Parent=repeat_region105;ltr_similarity=83.04;seq_number=0
seq0	LTRharvest	long_terminal_repeat	27829437	27829719	.	?	.	Parent=LTR_retrotransposon105
seq0	LTRharvest	long_terminal_repeat	27835493	27835759	.	?	.	Parent=LTR_retrotransposon105
seq0	LTRharvest	target_site_duplication	27835760	27835763	.	?	.	Parent=repeat_region105
###
seq0	LTRharvest	repeat_region	27930407	27936480	.	?	.	ID=repeat_region106
seq0	LTRharvest	target_site_duplication	27930407	27930410	.	?	.	Parent=repeat_region106
seq0	LTRharvest	LTR_retrotransposon	27930411	27936476	.	?	.	ID=LTR_retrotransposon106;Parent=repeat_region106;ltr_similarity=86.23;seq_number=0
seq0	LTRharvest	long_terminal_repeat	27930411	27931100	.	?	.	Parent=LTR_retrotransposon106
seq0	LTRharvest	long_terminal_repeat	27935793	27936476	.	?	.	Parent=LTR_retrotransposon106
seq0	LTRharvest	target_site_duplication	27936477	27936480	.	?	.	Parent=repeat_region106
###
seq0	LTRharvest	repeat_region	28501875	28506086	.	?	.	ID=repeat_region107
seq0	LTRharvest	target_site_duplication	28501875	28501878	.	?	.	Parent=repeat_region107
seq0	LTRharvest	LTR_retrotransposon	28501879	28506082	.	?	.	ID=LTR_retrotransposon107;Parent=repeat_region107;ltr_similarity=79.04;seq_number=0
seq0	LTRharvest	long_terminal_repeat	28501879	28502042	.	?	.	Parent=LTR_retrotransposon107
seq0	LTRharvest	long_terminal_repeat	28505916	28506082	.	?	.	Parent=LTR_retrotransposon107
seq0	LTRharvest	target_site_duplication	28506083	28506086	.	?	.	Parent=repeat_region107
###
seq0	LTRharvest	repeat_region	29587842	29595899	.	?	.	ID=repeat_region108
seq0	LTRharvest	target_site_duplication	29587842	29587845	.	?	.	Parent=repeat_region108
seq0	LTRharvest	LTR_retrotransposon	29587846	29595895	.	?	.	ID=LTR_retrotransposon108;Parent=repeat_region108;ltr_similarity=92.81;seq_number=0
seq0	LTRharvest	long_terminal_repeat	29587846	29587984	.	?	.	Parent=LTR_retrotransposon108
seq0	LTRharvest	long_terminal_repeat	29595759	29595895	.	?	.	Parent=LTR_retrotransposon108
seq0	LTRharvest	target_site_duplication	29595896	29595899	.	?	.	Parent=repeat_region108
###
seq0	LTRharvest	repeat_region	29642079	29647530	.	?	.	ID=repeat_region109
seq0	LTRharvest	target_site_duplication	29642079	29642082	.	?	.	Parent=repeat_region109
seq0	LTRharvest	LTR_retrotransposon	29642083	29647526	.	?	.	ID=LTR_retrotransposon109;Parent=repeat_region109;ltr_similarity=91.26;seq_number=0
seq0	LTRharvest	long_terminal_repeat	29642083	29643422	.	?	.	Parent=LTR_retrotransposon109
seq0	LTRharvest	long_terminal_repeat	29646177	29647526	.	?	.	Parent=LTR_retrotransposon109
seq0	LTRharvest	target_site_duplication	29647527	29647530	.	?	.	Parent=repeat_region109
###
seq0	LTRharvest	repeat_region	29700880	29707702	.	?	.	ID=repeat_region110
seq0	LTRharvest	target_site_duplication	29700880	29700883	.	?	.	Parent=repeat_region110
seq0	LTRharvest	LTR_retrotransposon	29700884	29707698	.	?	.	ID=LTR_retrotransposon110;Parent=repeat_region110;ltr_similarity=85.59;seq_number=0
seq0	LTRharvest	long_terminal_repeat	29700884	29700998	.	?	.	Parent=LTR_retrotransposon110
seq0	LTRharvest	long_terminal_repeat	29707581	29707698	.	?	.	Parent=LTR_retrotransposon110
seq0	LTRharvest	target_site_duplication	29707699	29707702	.	?	.	Parent=repeat_region110
###
seq0	LTRharvest	repeat_region	30419862	30424332	.	-	.	ID=repeat_region111
seq0	LTRharvest	target_site_duplication	30419862	30419865	.	-	.	Parent=repeat_region111
seq0	LTRharvest	LTR_retrotransposon	30419866	30424328	.	-	.	ID=LTR_retrotransposon111;Parent=repeat_region111;ltr_similarity=91.60;seq_number=0
seq0	LTRharvest	long_terminal_repeat	30419866	30420115	.	-	.	Parent=LTR_retrotransposon111
seq0	LTRdigest	RR_tract	30420123	30420130	.	-	.	Parent=LTR_retrotransposon111
seq0	LTRharvest	long_terminal_repeat	30424084	30424328	.	-	.	Parent=LTR_retrotransposon111
seq0	LTRharvest	target_site_duplication	30424329	30424332	.	-	.	Parent=repeat_region111
###
seq1	LTRharvest	repeat_region	2076	10525	.	?	.	ID=repeat_region112
seq1	LTRharvest	target_site_duplication	2076	2079	.	?	.	Parent=repeat_region112
seq1	LTRharvest	LTR_retrotransposon	2080	10521	.	?	.	ID=LTR_retrotransposon112;Parent=repeat_region112;ltr_similarity=90.24;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2080	2243	.	?	.	Parent=LTR_retrotransposon112
seq1	LTRharvest	long_terminal_repeat	10370	10521	.	?	.	Parent=LTR_retrotransposon112
seq1	LTRharvest	target_site_duplication	10522	10525	.	?	.	Parent=repeat_region112
###
seq1	LTRharvest	repeat_region	167971	174028	.	?	.	ID=repeat_region113
seq1	LTRharvest	target_site_duplication	167971	167974	.	?	.	Parent=repeat_region113
seq1	LTRharvest	LTR_retrotransposon	167975	174024	.	?	.	ID=LTR_retrotransposon113;Parent=repeat_region113;ltr_similarity=90.93;seq_number=1
seq1	LTRharvest	long_terminal_repeat	167975	168390	.	?	.	Parent=LTR_retrotransposon113
seq1	LTRharvest	long_terminal_repeat	173606	174024	.	?	.	Parent=LTR_retrotransposon113
seq1	LTRharvest	target_site_duplication	174025	174028	.	?	.	Parent=repeat_region113
###
seq1	LTRharvest	repeat_region	593303	610017	.	+	.	ID=repeat_region114
seq1	LTRharvest	target_site_duplication	593303	593306	.	+	.	Parent=repeat_region114
seq1	LTRharvest	LTR_retrotransposon	593307	610013	.	+	.	ID=LTR_retrotransposon114;Parent=repeat_region114;ltr_similarity=71.77;seq_number=1
seq1	LTRharvest	long_terminal_repeat	593307	593428	.	+	.	Parent=LTR_retrotransposon114
seq1	LTRdigest	RR_tract	609859	609869	.	+	.	Parent=LTR_retrotransposon114
seq1	LTRharvest	long_terminal_repeat	609890	610013	.	+	.	Parent=LTR_retrotransposon114
seq1	LTRharvest	target_site_duplication	610014	610017	.	+	.	Parent=repeat_region114
###
seq1	LTRharvest	repeat_region	611686	617414	.	-	.	ID=repeat_region115
seq1	LTRharvest	target_site_duplication	611686	611689	.	-	.	Parent=repeat_region115
seq1	LTRharvest	LTR_retrotransposon	611690	617410	.	-	.	ID=LTR_retrotransposon115;Parent=repeat_region115;ltr_similarity=80.75;seq_number=1
seq1	LTRharvest	long_terminal_repeat	611690	611954	.	-	.	Parent=LTR_retrotransposon115
seq1	LTRdigest	RR_tract	611953	611962	.	-	.	Parent=LTR_retrotransposon115
seq1	LTRharvest	long_terminal_repeat	617170	617410	.	-	.	Parent=LTR_retrotransposon115
seq1	LTRharvest	target_site_duplication	617411	617414	.	-	.	Parent=repeat_region115
###
seq1	LTRharvest	repeat_region	775778	782416	.	?	.	ID=repeat_region116
seq1	LTRharvest	target_site_duplication	775778	775781	.	?	.	Parent=repeat_region116
seq1	LTRharvest	LTR_retrotransposon	775782	782412	.	?	.	ID=LTR_retrotransposon116;Parent=repeat_region116;ltr_similarity=89.14;seq_number=1
seq1	LTRharvest	long_terminal_repeat	775782	775952	.	?	.	Parent=LTR_retrotransposon116
seq1	LTRharvest	long_terminal_repeat	782238	782412	.	?	.	Parent=LTR_retrotransposon116
seq1	LTRharvest	target_site_duplication	782413	782416	.	?	.	Parent=repeat_region116
###
seq1	LTRharvest	repeat_region	909729	914343	.	-	.	ID=repeat_region117
seq1	LTRharvest	target_site_duplication	909729	909732	.	-	.	Parent=repeat_region117
seq1	LTRharvest	LTR_retrotransposon	909733	914339	.	-	.	ID=LTR_retrotransposon117;Parent=repeat_region117;ltr_similarity=94.51;seq_number=1
seq1	LTRharvest	long_terminal_repeat	909733	909896	.	-	.	Parent=LTR_retrotransposon117
seq1	LTRdigest	RR_tract	909869	909885	.	-	.	Parent=LTR_retrotransposon117
seq1	LTRharvest	long_terminal_repeat	914176	914339	.	-	.	Parent=LTR_retrotransposon117
seq1	LTRharvest	target_site_duplication	914340	914343	.	-	.	Parent=repeat_region117
###
seq1	LTRharvest	repeat_region	959962	964735	.	?	.	ID=repeat_region118
seq1	LTRharvest	target_site_duplication	959962	959965	.	?	.	Parent=repeat_region118
seq1	LTRharvest	LTR_retrotransposon	959966	964731	.	?	.	ID=LTR_retrotransposon118;Parent=repeat_region118;ltr_similarity=81.53;seq_number=1
seq1	LTRharvest	long_terminal_repeat	959966	960214	.	?	.	Parent=LTR_retrotransposon118
seq1	LTRharvest	long_terminal_repeat	964487	964731	.	?	.	Parent=LTR_retrotransposon118
seq1	LTRharvest	target_site_duplication	964732	964735	.	?	.	Parent=repeat_region118
###
seq1	LTRharvest	repeat_region	975725	990321	.	?	.	ID=repeat_region119
seq1	LTRharvest	target_site_duplication	975725	975728	.	?	.	Parent=repeat_region119
seq1	LTRharvest	LTR_retrotransposon	975729	990317	.	?	.	ID=LTR_retrotransposon119;Parent=repeat_region119;ltr_similarity=83.10;seq_number=1
seq1	LTRharvest	long_terminal_repeat	975729	975870	.	?	.	Parent=LTR_retrotransposon119
seq1	LTRharvest	long_terminal_repeat	990188	990317	.	?	.	Parent=LTR_retrotransposon119
seq1	LTRharvest	target_site_duplication	990318	990321	.	?	.	Parent=repeat_region119
###
seq1	LTRharvest	repeat_region	1235979	1250419	.	-	.	ID=repeat_region120
seq1	LTRharvest	target_site_duplication	1235979	1235982	.	-	.	Parent=repeat_region120
seq1	LTRharvest	LTR_retrotransposon	1235983	1250415	.	-	.	ID=LTR_retrotransposon120;Parent=repeat_region120;ltr_similarity=87.14;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1235983	1236192	.	-	.	Parent=LTR_retrotransposon120
seq1	LTRdigest	RR_tract	1236167	1236176	.	-	.	Parent=LTR_retrotransposon120
seq1	LTRharvest	long_terminal_repeat	1250213	1250415	.	-	.	Parent=LTR_retrotransposon120
seq1	LTRharvest	target_site_duplication	1250416	1250419	.	-	.	Parent=repeat_region120
###
seq1	LTRharvest	repeat_region	1292785	1297018	.	+	.	ID=repeat_region121
seq1	LTRharvest	target_site_duplication	1292785	1292789	.	+	.	Parent=repeat_region121
seq1	LTRharvest	LTR_retrotransposon	1292790	1297013	.	+	.	ID=LTR_retrotransposon121;Parent=repeat_region121;ltr_similarity=84.87;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1292790	1292935	.	+	.	Parent=LTR_retrotransposon121
seq1	LTRdigest	RR_tract	1296861	1296880	.	+	.	Parent=LTR_retrotransposon121
seq1	LTRharvest	long_terminal_repeat	1296862	1297013	.	+	.	Parent=LTR_retrotransposon121
seq1	LTRharvest	target_site_duplication	1297014	1297018	.	+	.	Parent=repeat_region121
###
seq1	LTRharvest	repeat_region	1388827	1393906	.	+	.	ID=repeat_region122
seq1	LTRharvest	target_site_duplication	1388827	1388831	.	+	.	Parent=repeat_region122
seq1	LTRharvest	LTR_retrotransposon	1388832	1393901	.	+	.	ID=LTR_retrotransposon122;Parent=repeat_region122;ltr_similarity=97.80;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1388832	1389013	.	+	.	Parent=LTR_retrotransposon122
seq1	LTRharvest	long_terminal_repeat	1393720	1393901	.	+	.	Parent=LTR_retrotransposon122
seq1	LTRdigest	RR_tract	1393724	1393746	.	+	.	Parent=LTR_retrotransposon122
seq1	LTRharvest	target_site_duplication	1393902	1393906	.	+	.	Parent=repeat_region122
###
seq1	LTRharvest	repeat_region	1395257	1399527	.	-	.	ID=repeat_region123
seq1	LTRharvest	target_site_duplication	1395257	1395260	.	-	.	Parent=repeat_region123
seq1	LTRharvest	LTR_retrotransposon	1395261	1399523	.	-	.	ID=LTR_retrotransposon123;Parent=repeat_region123;ltr_similarity=94.67;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1395261	1395428	.	-	.	Parent=LTR_retrotransposon123
seq1	LTRdigest	RR_tract	1395401	1395411	.	-	.	Parent=LTR_retrotransposon123
seq1	LTRharvest	long_terminal_repeat	1399355	1399523	.	-	.	Parent=LTR_retrotransposon123
seq1	LTRharvest	target_site_duplication	1399524	1399527	.	-	.	Parent=repeat_region123
###
seq1	LTRharvest	repeat_region	1523651	1531028	.	?	.	ID=repeat_region124
seq1	LTRharvest	target_site_duplication	1523651	1523654	.	?	.	Parent=repeat_region124
seq1	LTRharvest	LTR_retrotransposon	1523655	1531024	.	?	.	ID=LTR_retrotransposon124;Parent=repeat_region124;ltr_similarity=89.26;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1523655	1523767	.	?	.	Parent=LTR_retrotransposon124
seq1	LTRharvest	long_terminal_repeat	1530904	1531024	.	?	.	Parent=LTR_retrotransposon124
seq1	LTRharvest	target_site_duplication	1531025	1531028	.	?	.	Parent=repeat_region124
###
seq1	LTRharvest	repeat_region	1557136	1562066	.	-	.	ID=repeat_region125
seq1	LTRharvest	target_site_duplication	1557136	1557139	.	-	.	Parent=repeat_region125
seq1	LTRharvest	LTR_retrotransposon	1557140	1562062	.	-	.	ID=LTR_retrotransposon125;Parent=repeat_region125;ltr_similarity=83.90;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1557140	1557257	.	-	.	Parent=LTR_retrotransposon125
seq1	LTRdigest	RR_tract	1557249	1557277	.	-	.	Parent=LTR_retrotransposon125
seq1	LTRdigest	protein_match	1559530	1559854	3.7e-14	-	.	Parent=LTR_retrotransposon125;reading_frame=0;name=rve
seq1	LTRdigest	protein_match	1561008	1561332	1.2e-21	-	.	Parent=LTR_retrotransposon125;reading_frame=1;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	1561960	1562062	.	-	.	Parent=LTR_retrotransposon125
seq1	LTRharvest	target_site_duplication	1562063	1562066	.	-	.	Parent=repeat_region125
###
seq1	LTRharvest	repeat_region	1629667	1637494	.	-	.	ID=repeat_region126
seq1	LTRharvest	target_site_duplication	1629667	1629670	.	-	.	Parent=repeat_region126
seq1	LTRharvest	LTR_retrotransposon	1629671	1637490	.	-	.	ID=LTR_retrotransposon126;Parent=repeat_region126;ltr_similarity=96.31;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1629671	1630786	.	-	.	Parent=LTR_retrotransposon126
seq1	LTRdigest	protein_match	1632428	1632770	2.8e-14	-	.	Parent=LTR_retrotransposon126;reading_frame=1;name=rve
seq1	LTRdigest	protein_match	1633868	1634348	7.4e-32	-	.	Parent=LTR_retrotransposon126;reading_frame=1;name=RVT_1
seq1	LTRdigest	protein_match	1635263	1635551	9.4e-29	-	.	Parent=LTR_retrotransposon126;reading_frame=1;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	1636354	1637490	.	-	.	Parent=LTR_retrotransposon126
seq1	LTRharvest	target_site_duplication	1637491	1637494	.	-	.	Parent=repeat_region126
###
seq1	LTRharvest	repeat_region	1882603	1887825	.	+	.	ID=repeat_region127
seq1	LTRharvest	target_site_duplication	1882603	1882606	.	+	.	Parent=repeat_region127
seq1	LTRharvest	LTR_retrotransposon	1882607	1887821	.	+	.	ID=LTR_retrotransposon127;Parent=repeat_region127;ltr_similarity=98.97;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1882607	1883377	.	+	.	Parent=LTR_retrotransposon127
seq1	LTRdigest	protein_match	1884462	1885158	1.4e-45	+	.	Parent=LTR_retrotransposon127;reading_frame=1;name=RVT_1
seq1	LTRdigest	RR_tract	1887028	1887046	.	+	.	Parent=LTR_retrotransposon127
seq1	LTRharvest	long_terminal_repeat	1887044	1887821	.	+	.	Parent=LTR_retrotransposon127
seq1	LTRharvest	target_site_duplication	1887822	1887825	.	+	.	Parent=repeat_region127
###
seq1	LTRharvest	repeat_region	1970250	1974964	.	+	.	ID=repeat_region128
seq1	LTRharvest	target_site_duplication	1970250	1970253	.	+	.	Parent=repeat_region128
seq1	LTRharvest	LTR_retrotransposon	1970254	1974960	.	+	.	ID=LTR_retrotransposon128;Parent=repeat_region128;ltr_similarity=94.95;seq_number=1
seq1	LTRharvest	long_terminal_repeat	1970254	1970550	.	+	.	Parent=LTR_retrotransposon128
seq1	LTRdigest	protein_match	1972114	1972456	3.2e-27	+	.	Parent=LTR_retrotransposon128;reading_frame=0;name=rve
seq1	LTRharvest	long_terminal_repeat	1974674	1974960	.	+	.	Parent=LTR_retrotransposon128
seq1	LTRdigest	RR_tract	1974685	1974693	.	+	.	Parent=LTR_retrotransposon128
seq1	LTRharvest	target_site_duplication	1974961	1974964	.	+	.	Parent=repeat_region128
###
seq1	LTRharvest	repeat_region	2075303	2080611	.	-	.	ID=repeat_region129
seq1	LTRharvest	target_site_duplication	2075303	2075306	.	-	.	Parent=repeat_region129
seq1	LTRharvest	LTR_retrotransposon	2075307	2080607	.	-	.	ID=LTR_retrotransposon129;Parent=repeat_region129;ltr_similarity=94.59;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2075307	2075631	.	-	.	Parent=LTR_retrotransposon129
seq1	LTRdigest	RR_tract	2075648	2075656	.	-	.	Parent=LTR_retrotransposon129
seq1	LTRdigest	protein_match	2076377	2076698	2.5e-12	-	.	Parent=LTR_retrotransposon129;reading_frame=0;name=rve
seq1	LTRdigest	protein_match	2077756	2078233	1.7e-33	-	.	Parent=LTR_retrotransposon129;reading_frame=1;name=RVT_1
seq1	LTRdigest	protein_match	2079480	2079756	6.5e-09	-	.	Parent=LTR_retrotransposon129;reading_frame=2;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	2080275	2080607	.	-	.	Parent=LTR_retrotransposon129
seq1	LTRharvest	target_site_duplication	2080608	2080611	.	-	.	Parent=repeat_region129
###
seq1	LTRharvest	repeat_region	2274198	2280052	.	+	.	ID=repeat_region130
seq1	LTRharvest	target_site_duplication	2274198	2274201	.	+	.	Parent=repeat_region130
seq1	LTRharvest	LTR_retrotransposon	2274202	2280048	.	+	.	ID=LTR_retrotransposon130;Parent=repeat_region130;ltr_similarity=98.01;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2274202	2274752	.	+	.	Parent=LTR_retrotransposon130
seq1	LTRdigest	RR_tract	2279483	2279495	.	+	.	Parent=LTR_retrotransposon130
seq1	LTRharvest	long_terminal_repeat	2279497	2280048	.	+	.	Parent=LTR_retrotransposon130
seq1	LTRharvest	target_site_duplication	2280049	2280052	.	+	.	Parent=repeat_region130
###
seq1	LTRharvest	repeat_region	2302460	2307174	.	+	.	ID=repeat_region131
seq1	LTRharvest	target_site_duplication	2302460	2302463	.	+	.	Parent=repeat_region131
seq1	LTRharvest	LTR_retrotransposon	2302464	2307170	.	+	.	ID=LTR_retrotransposon131;Parent=repeat_region131;ltr_similarity=96.21;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2302464	2302753	.	+	.	Parent=LTR_retrotransposon131
seq1	LTRdigest	protein_match	2304321	2304660	1.1e-27	+	.	Parent=LTR_retrotransposon131;reading_frame=0;name=rve
seq1	LTRharvest	long_terminal_repeat	2306882	2307170	.	+	.	Parent=LTR_retrotransposon131
seq1	LTRharvest	target_site_duplication	2307171	2307174	.	+	.	Parent=repeat_region131
###
seq1	LTRharvest	repeat_region	2745595	2752277	.	+	.	ID=repeat_region132
seq1	LTRharvest	target_site_duplication	2745595	2745599	.	+	.	Parent=repeat_region132
seq1	LTRharvest	LTR_retrotransposon	2745600	2752272	.	+	.	ID=LTR_retrotransposon132;Parent=repeat_region132;ltr_similarity=95.00;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2745600	2745717	.	+	.	Parent=LTR_retrotransposon132
seq1	LTRdigest	protein_match	2749359	2749689	1.6e-17	+	.	Parent=LTR_retrotransposon132;reading_frame=0;name=rve
seq1	LTRdigest	RR_tract	2752142	2752152	.	+	.	Parent=LTR_retrotransposon132
seq1	LTRharvest	long_terminal_repeat	2752153	2752272	.	+	.	Parent=LTR_retrotransposon132
seq1	LTRharvest	target_site_duplication	2752273	2752277	.	+	.	Parent=repeat_region132
###
seq1	LTRharvest	repeat_region	2844745	2849620	.	-	.	ID=repeat_region133
seq1	LTRharvest	target_site_duplication	2844745	2844748	.	-	.	Parent=repeat_region133
seq1	LTRharvest	LTR_retrotransposon	2844749	2849616	.	-	.	ID=LTR_retrotransposon133;Parent=repeat_region133;ltr_similarity=85.42;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2844749	2845033	.	-	.	Parent=LTR_retrotransposon133
seq1	LTRdigest	protein_match	2847475	2847757	4.7e-18	-	.	Parent=LTR_retrotransposon133;reading_frame=2;name=rve
seq1	LTRharvest	long_terminal_repeat	2849322	2849616	.	-	.	Parent=LTR_retrotransposon133
seq1	LTRharvest	target_site_duplication	2849617	2849620	.	-	.	Parent=repeat_region133
###
seq1	LTRharvest	repeat_region	2858547	2864196	.	-	.	ID=repeat_region134
seq1	LTRharvest	target_site_duplication	2858547	2858550	.	-	.	Parent=repeat_region134
seq1	LTRharvest	LTR_retrotransposon	2858551	2864192	.	-	.	ID=LTR_retrotransposon134;Parent=repeat_region134;ltr_similarity=96.64;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2858551	2859321	.	-	.	Parent=LTR_retrotransposon134
seq1	LTRdigest	RR_tract	2859325	2859335	.	-	.	Parent=LTR_retrotransposon134
seq1	LTRdigest	protein_match	2861535	2861880	1.1e-23	-	.	Parent=LTR_retrotransposon134;reading_frame=2;name=rve
seq1	LTRdigest	protein_match	2862912	2863122	5.1e-09	-	.	Parent=LTR_retrotransposon134;reading_frame=2;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	2863420	2864192	.	-	.	Parent=LTR_retrotransposon134
seq1	LTRharvest	target_site_duplication	2864193	2864196	.	-	.	Parent=repeat_region134
###
seq1	LTRharvest	repeat_region	2902325	2907122	.	+	.	ID=repeat_region135
seq1	LTRharvest	target_site_duplication	2902325	2902329	.	+	.	Parent=repeat_region135
seq1	LTRharvest	LTR_retrotransposon	2902330	2907117	.	+	.	ID=LTR_retrotransposon135;Parent=repeat_region135;ltr_similarity=100.00;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2902330	2902486	.	+	.	Parent=LTR_retrotransposon135
seq1	LTRdigest	protein_match	2902920	2903214	1.6e-07	+	.	Parent=LTR_retrotransposon135;reading_frame=2;name=Retrotrans_gag
seq1	LTRdigest	protein_match	2904300	2904633	6.7e-23	+	.	Parent=LTR_retrotransposon135;reading_frame=2;name=rve
seq1	LTRdigest	RR_tract	2906952	2906960	.	+	.	Parent=LTR_retrotransposon135
seq1	LTRharvest	long_terminal_repeat	2906961	2907117	.	+	.	Parent=LTR_retrotransposon135
seq1	LTRharvest	target_site_duplication	2907118	2907122	.	+	.	Parent=repeat_region135
###
seq1	LTRharvest	repeat_region	2911993	2919586	.	?	.	ID=repeat_region136
seq1	LTRharvest	target_site_duplication	2911993	2911996	.	?	.	Parent=repeat_region136
seq1	LTRharvest	LTR_retrotransposon	2911997	2919582	.	?	.	ID=LTR_retrotransposon136;Parent=repeat_region136;ltr_similarity=83.25;seq_number=1
seq1	LTRharvest	long_terminal_repeat	2911997	2912190	.	?	.	Parent=LTR_retrotransposon136
seq1	LTRharvest	long_terminal_repeat	2919386	2919582	.	?	.	Parent=LTR_retrotransposon136
seq1	LTRharvest	target_site_duplication	2919583	2919586	.	?	.	Parent=repeat_region136
###
seq1	LTRharvest	repeat_region	3083899	3089472	.	-	.	ID=repeat_region137
seq1	LTRharvest	target_site_duplication	3083899	3083902	.	-	.	Parent=repeat_region137
seq1	LTRharvest	LTR_retrotransposon	3083903	3089468	.	-	.	ID=LTR_retrotransposon137;Parent=repeat_region137;ltr_similarity=97.06;seq_number=1
seq1	LTRharvest	long_terminal_repeat	3083903	3084406	.	-	.	Parent=LTR_retrotransposon137
seq1	LTRdigest	protein_match	3086951	3087287	3.2e-24	-	.	Parent=LTR_retrotransposon137;reading_frame=0;name=rve
seq1	LTRdigest	protein_match	3088397	3088556	2e-05	-	.	Parent=LTR_retrotransposon137;reading_frame=0;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	3088958	3089468	.	-	.	Parent=LTR_retrotransposon137
seq1	LTRharvest	target_site_duplication	3089469	3089472	.	-	.	Parent=repeat_region137
###
seq1	LTRharvest	repeat_region	3160545	3166285	.	-	.	ID=repeat_region138
seq1	LTRharvest	target_site_duplication	3160545	3160548	.	-	.	Parent=repeat_region138
seq1	LTRharvest	LTR_retrotransposon	3160549	3166281	.	-	.	ID=LTR_retrotransposon138;Parent=repeat_region138;ltr_similarity=97.50;seq_number=1
seq1	LTRharvest	long_terminal_repeat	3160549	3161267	.	-	.	Parent=LTR_retrotransposon138
seq1	LTRdigest	protein_match	3163673	3164024	6.1e-24	-	.	Parent=LTR_retrotransposon138;reading_frame=1;name=rve
seq1	LTRharvest	long_terminal_repeat	3165569	3166281	.	-	.	Parent=LTR_retrotransposon138
seq1	LTRharvest	target_site_duplication	3166282	3166285	.	-	.	Parent=repeat_region138
###
seq1	LTRharvest	repeat_region	3221677	3238919	.	-	.	ID=repeat_region139
seq1	LTRharvest	target_site_duplication	3221677	3221680	.	-	.	Parent=repeat_region139
seq1	LTRharvest	LTR_retrotransposon	3221681	3238915	.	-	.	ID=LTR_retrotransposon139;Parent=repeat_region139;ltr_similarity=90.91;seq_number=1
seq1	LTRharvest	long_terminal_repeat	3221681	3222246	.	-	.	Parent=LTR_retrotransposon139
seq1	LTRdigest	protein_match	3224686	3225457	0	-	.	Parent=LTR_retrotransposon139;reading_frame=0;name=RVT_1
seq1	LTRdigest	protein_match	3227747	3228083	1.3e-15	-	.	Parent=LTR_retrotransposon139;reading_frame=2;name=rve
seq1	LTRharvest	long_terminal_repeat	3238344	3238915	.	-	.	Parent=LTR_retrotransposon139
seq1	LTRharvest	target_site_duplication	3238916	3238919	.	-	.	Parent=repeat_region139
###
seq1	LTRharvest	repeat_region	3270275	3289113	.	?	.	ID=repeat_region140
seq1	LTRharvest	target_site_duplication	3270275	3270278	.	?	.	Parent=repeat_region140
seq1	LTRharvest	LTR_retrotransposon	3270279	3289109	.	?	.	ID=LTR_retrotransposon140;Parent=repeat_region140;ltr_similarity=96.63;seq_number=1
seq1	LTRharvest	long_terminal_repeat	3270279	3270482	.	?	.	Parent=LTR_retrotransposon140
seq1	LTRharvest	long_terminal_repeat	3288902	3289109	.	?	.	Parent=LTR_retrotransposon140
seq1	LTRharvest	target_site_duplication	3289110	3289113	.	?	.	Parent=repeat_region140
###
seq1	LTRharvest	repeat_region	3367925	3386293	.	-	.	ID=repeat_region141
seq1	LTRharvest	target_site_duplication	3367925	3367928	.	-	.	Parent=repeat_region141
seq1	LTRharvest	LTR_retrotransposon	3367929	3386289	.	-	.	ID=LTR_retrotransposon141;Parent=repeat_region141;ltr_similarity=91.15;seq_number=1
seq1	LTRharvest	long_terminal_repeat	3367929	3368154	.	-	.	Parent=LTR_retrotransposon141
seq1	LTRdigest	protein_match	3379197	3379437	1.7e-05	-	.	Parent=LTR_retrotransposon141;reading_frame=0;name=rve
seq1	LTRharvest	long_terminal_repeat	3386067	3386289	.	-	.	Parent=LTR_retrotransposon141
seq1	LTRharvest	target_site_duplication	3386290	3386293	.	-	.	Parent=repeat_region141
###
seq1	LTRharvest	repeat_region	3426170	3451004	.	+	.	ID=repeat_region142
seq1	LTRharvest	target_site_duplication	3426170	3426173	.	+	.	Parent=repeat_region142
seq1	LTRharvest	LTR_retrotransposon	3426174	3451000	.	+	.	ID=LTR_retrotransposon142;Parent=repeat_region142;ltr_similarity=93.36;seq_number=1
seq1	LTRharvest	long_terminal_repeat	3426174	3426392	.	+	.	Parent=LTR_retrotransposon142
seq1	LTRdigest	RR_tract	3450748	3450763	.	+	.	Parent=LTR_retrotransposon142
seq1	LTRharvest	long_terminal_repeat	3450775	3451000	.	+	.	Parent=LTR_retrotransposon142
seq1	LTRharvest	target_site_duplication	3451001	3451004	.	+	.	Parent=repeat_region142
###
seq1	LTRharvest	repeat_region	3539973	3559410	.	-	.	ID=repeat_region143
seq1	LTRharvest	target_site_duplication	3539973	3539976	.	-	.	Parent=repeat_region143
seq1	LTRharvest	LTR_retrotransposon	3539977	3559406	.	-	.	ID=LTR_retrotransposon143;Parent=repeat_region143;ltr_similarity=85.17;seq_number=1
seq1	LTRharvest	long_terminal_repeat	3539977	3540235	.	-	.	Parent=LTR_retrotransposon143
seq1	LTRdigest	protein_match	3550215	3550494	4.4e-22	-	.	Parent=LTR_retrotransposon143;reading_frame=2;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	3559144	3559406	.	-	.	Parent=LTR_retrotransposon143
seq1	LTRharvest	target_site_duplication	3559407	3559410	.	-	.	Parent=repeat_region143
###
seq1	LTRharvest	repeat_region	4080724	4088159	.	?	.	ID=repeat_region144
seq1	LTRharvest	target_site_duplication	4080724	4080727	.	?	.	Parent=repeat_region144
seq1	LTRharvest	LTR_retrotransposon	4080728	4088155	.	?	.	ID=LTR_retrotransposon144;Parent=repeat_region144;ltr_similarity=84.25;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4080728	4080854	.	?	.	Parent=LTR_retrotransposon144
seq1	LTRharvest	long_terminal_repeat	4088031	4088155	.	?	.	Parent=LTR_retrotransposon144
seq1	LTRharvest	target_site_duplication	4088156	4088159	.	?	.	Parent=repeat_region144
###
seq1	LTRharvest	repeat_region	4090705	4096107	.	-	.	ID=repeat_region145
seq1	LTRharvest	target_site_duplication	4090705	4090708	.	-	.	Parent=repeat_region145
seq1	LTRharvest	LTR_retrotransposon	4090709	4096103	.	-	.	ID=LTR_retrotransposon145;Parent=repeat_region145;ltr_similarity=91.22;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4090709	4091059	.	-	.	Parent=LTR_retrotransposon145
seq1	LTRdigest	protein_match	4093189	4093669	1.3e-31	-	.	Parent=LTR_retrotransposon145;reading_frame=1;name=RVT_1
seq1	LTRdigest	protein_match	4094849	4095113	4.9e-15	-	.	Parent=LTR_retrotransposon145;reading_frame=0;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	4095751	4096103	.	-	.	Parent=LTR_retrotransposon145
seq1	LTRharvest	target_site_duplication	4096104	4096107	.	-	.	Parent=repeat_region145
###
seq1	LTRharvest	repeat_region	4110942	4115701	.	+	.	ID=repeat_region146
seq1	LTRharvest	target_site_duplication	4110942	4110946	.	+	.	Parent=repeat_region146
seq1	LTRharvest	LTR_retrotransposon	4110947	4115696	.	+	.	ID=LTR_retrotransposon146;Parent=repeat_region146;ltr_similarity=91.46;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4110947	4111191	.	+	.	Parent=LTR_retrotransposon146
seq1	LTRdigest	protein_match	4112488	4112827	3.2e-20	+	.	Parent=LTR_retrotransposon146;reading_frame=2;name=rve
seq1	LTRdigest	protein_match	4113951	4114143	2.8e-05	+	.	Parent=LTR_retrotransposon146;reading_frame=1;name=RVT_1
seq1	LTRharvest	long_terminal_repeat	4115451	4115696	.	+	.	Parent=LTR_retrotransposon146
seq1	LTRharvest	target_site_duplication	4115697	4115701	.	+	.	Parent=repeat_region146
###
seq1	LTRharvest	repeat_region	4116018	4120745	.	+	.	ID=repeat_region147
seq1	LTRharvest	target_site_duplication	4116018	4116022	.	+	.	Parent=repeat_region147
seq1	LTRharvest	LTR_retrotransposon	4116023	4120740	.	+	.	ID=LTR_retrotransposon147;Parent=repeat_region147;ltr_similarity=93.77;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4116023	4116311	.	+	.	Parent=LTR_retrotransposon147
seq1	LTRdigest	protein_match	4117891	4118242	9.6e-26	+	.	Parent=LTR_retrotransposon147;reading_frame=2;name=rve
seq1	LTRdigest	RR_tract	4120451	4120461	.	+	.	Parent=LTR_retrotransposon147
seq1	LTRharvest	long_terminal_repeat	4120462	4120740	.	+	.	Parent=LTR_retrotransposon147
seq1	LTRharvest	target_site_duplication	4120741	4120745	.	+	.	Parent=repeat_region147
###
seq1	LTRharvest	repeat_region	4161045	4173980	.	-	.	ID=repeat_region148
seq1	LTRharvest	target_site_duplication	4161045	4161049	.	-	.	Parent=repeat_region148
seq1	LTRharvest	LTR_retrotransposon	4161050	4173975	.	-	.	ID=LTR_retrotransposon148;Parent=repeat_region148;ltr_similarity=94.88;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4161050	4162259	.	-	.	Parent=LTR_retrotransposon148
seq1	LTRdigest	protein_match	4171757	4171985	9.1e-12	-	.	Parent=LTR_retrotransposon148;reading_frame=1;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	4172768	4173975	.	-	.	Parent=LTR_retrotransposon148
seq1	LTRharvest	target_site_duplication	4173976	4173980	.	-	.	Parent=repeat_region148
###
seq1	LTRharvest	repeat_region	4230739	4236517	.	+	.	ID=repeat_region149
seq1	LTRharvest	target_site_duplication	4230739	4230742	.	+	.	Parent=repeat_region149
seq1	LTRharvest	LTR_retrotransposon	4230743	4236513	.	+	.	ID=LTR_retrotransposon149;Parent=repeat_region149;ltr_similarity=96.88;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4230743	4231512	.	+	.	Parent=LTR_retrotransposon149
seq1	LTRdigest	protein_match	4233058	4233280	1.7e-06	+	.	Parent=LTR_retrotransposon149;reading_frame=2;name=rve
seq1	LTRdigest	protein_match	4233281	4233401	3.2e-10	+	.	Parent=LTR_retrotransposon149;reading_frame=0;name=rve
seq1	LTRharvest	long_terminal_repeat	4235748	4236513	.	+	.	Parent=LTR_retrotransposon149
seq1	LTRharvest	target_site_duplication	4236514	4236517	.	+	.	Parent=repeat_region149
###
seq1	LTRharvest	repeat_region	4408334	4413621	.	-	.	ID=repeat_region150
seq1	LTRharvest	target_site_duplication	4408334	4408337	.	-	.	Parent=repeat_region150
seq1	LTRharvest	LTR_retrotransposon	4408338	4413617	.	-	.	ID=LTR_retrotransposon150;Parent=repeat_region150;ltr_similarity=88.86;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4408338	4408747	.	-	.	Parent=LTR_retrotransposon150
seq1	LTRdigest	protein_match	4411773	4412106	1.6e-18	-	.	Parent=LTR_retrotransposon150;reading_frame=2;name=rve
seq1	LTRharvest	long_terminal_repeat	4413205	4413617	.	-	.	Parent=LTR_retrotransposon150
seq1	LTRharvest	target_site_duplication	4413618	4413621	.	-	.	Parent=repeat_region150
###
seq1	LTRharvest	repeat_region	4542916	4547702	.	+	.	ID=repeat_region151
seq1	LTRharvest	target_site_duplication	4542916	4542919	.	+	.	Parent=repeat_region151
seq1	LTRharvest	LTR_retrotransposon	4542920	4547698	.	+	.	ID=LTR_retrotransposon151;Parent=repeat_region151;ltr_similarity=86.89;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4542920	4543125	.	+	.	Parent=LTR_retrotransposon151
seq1	LTRdigest	protein_match	4547003	4547489	3.1e-29	+	.	Parent=LTR_retrotransposon151;reading_frame=0;name=RVT_1
seq1	LTRdigest	RR_tract	4547496	4547515	.	+	.	Parent=LTR_retrotransposon151
seq1	LTRharvest	long_terminal_repeat	4547498	4547698	.	+	.	Parent=LTR_retrotransposon151
seq1	LTRharvest	target_site_duplication	4547699	4547702	.	+	.	Parent=repeat_region151
###
seq1	LTRharvest	repeat_region	4558513	4566129	.	-	.	ID=repeat_region152
seq1	LTRharvest	target_site_duplication	4558513	4558516	.	-	.	Parent=repeat_region152
seq1	LTRharvest	LTR_retrotransposon	4558517	4566125	.	-	.	ID=LTR_retrotransposon152;Parent=repeat_region152;ltr_similarity=94.22;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4558517	4559018	.	-	.	Parent=LTR_retrotransposon152
seq1	LTRdigest	protein_match	4560663	4560984	4.3e-10	-	.	Parent=LTR_retrotransposon152;reading_frame=2;name=rve
seq1	LTRdigest	protein_match	4562122	4562575	3.6e-33	-	.	Parent=LTR_retrotransposon152;reading_frame=1;name=RVT_1
seq1	LTRdigest	protein_match	4563879	4564089	3.7e-15	-	.	Parent=LTR_retrotransposon152;reading_frame=2;name=Retrotrans_gag
seq1	LTRdigest	protein_match	4564058	4564163	1.4e-05	-	.	Parent=LTR_retrotransposon152;reading_frame=0;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	4565631	4566125	.	-	.	Parent=LTR_retrotransposon152
seq1	LTRharvest	target_site_duplication	4566126	4566129	.	-	.	Parent=repeat_region152
###
seq1	LTRharvest	repeat_region	4682597	4690779	.	-	.	ID=repeat_region153
seq1	LTRharvest	target_site_duplication	4682597	4682600	.	-	.	Parent=repeat_region153
seq1	LTRharvest	LTR_retrotransposon	4682601	4690775	.	-	.	ID=LTR_retrotransposon153;Parent=repeat_region153;ltr_similarity=85.45;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4682601	4682930	.	-	.	Parent=LTR_retrotransposon153
seq1	LTRdigest	RR_tract	4682920	4682927	.	-	.	Parent=LTR_retrotransposon153
seq1	LTRharvest	long_terminal_repeat	4690453	4690775	.	-	.	Parent=LTR_retrotransposon153
seq1	LTRharvest	target_site_duplication	4690776	4690779	.	-	.	Parent=repeat_region153
###
seq1	LTRharvest	repeat_region	4693477	4698782	.	?	.	ID=repeat_region154
seq1	LTRharvest	target_site_duplication	4693477	4693481	.	?	.	Parent=repeat_region154
seq1	LTRharvest	LTR_retrotransposon	4693482	4698777	.	?	.	ID=LTR_retrotransposon154;Parent=repeat_region154;ltr_similarity=97.28;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4693482	4694323	.	?	.	Parent=LTR_retrotransposon154
seq1	LTRharvest	long_terminal_repeat	4697933	4698777	.	?	.	Parent=LTR_retrotransposon154
seq1	LTRharvest	target_site_duplication	4698778	4698782	.	?	.	Parent=repeat_region154
###
seq1	LTRharvest	repeat_region	4737959	4753537	.	-	.	ID=repeat_region155
seq1	LTRharvest	target_site_duplication	4737959	4737962	.	-	.	Parent=repeat_region155
seq1	LTRharvest	LTR_retrotransposon	4737963	4753533	.	-	.	ID=LTR_retrotransposon155;Parent=repeat_region155;ltr_similarity=80.50;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4737963	4738419	.	-	.	Parent=LTR_retrotransposon155
seq1	LTRdigest	protein_match	4739760	4740036	6.9e-22	-	.	Parent=LTR_retrotransposon155;reading_frame=0;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	4753057	4753533	.	-	.	Parent=LTR_retrotransposon155
seq1	LTRharvest	target_site_duplication	4753534	4753537	.	-	.	Parent=repeat_region155
###
seq1	LTRharvest	repeat_region	4775681	4780525	.	-	.	ID=repeat_region156
seq1	LTRharvest	target_site_duplication	4775681	4775684	.	-	.	Parent=repeat_region156
seq1	LTRharvest	LTR_retrotransposon	4775685	4780521	.	-	.	ID=LTR_retrotransposon156;Parent=repeat_region156;ltr_similarity=93.60;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4775685	4776356	.	-	.	Parent=LTR_retrotransposon156
seq1	LTRdigest	protein_match	4778967	4779150	2.8e-15	-	.	Parent=LTR_retrotransposon156;reading_frame=0;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	4779850	4780521	.	-	.	Parent=LTR_retrotransposon156
seq1	LTRharvest	target_site_duplication	4780522	4780525	.	-	.	Parent=repeat_region156
###
seq1	LTRharvest	repeat_region	4818682	4826107	.	+	.	ID=repeat_region157
seq1	LTRharvest	target_site_duplication	4818682	4818685	.	+	.	Parent=repeat_region157
seq1	LTRharvest	LTR_retrotransposon	4818686	4826103	.	+	.	ID=LTR_retrotransposon157;Parent=repeat_region157;ltr_similarity=93.02;seq_number=1
seq1	LTRharvest	long_terminal_repeat	4818686	4818943	.	+	.	Parent=LTR_retrotransposon157
seq1	LTRdigest	protein_match	4820610	4820919	1.5e-15	+	.	Parent=LTR_retrotransposon157;reading_frame=1;name=rve
seq1	LTRdigest	RR_tract	4825840	4825848	.	+	.	Parent=LTR_retrotransposon157
seq1	LTRharvest	long_terminal_repeat	4825849	4826103	.	+	.	Parent=LTR_retrotransposon157
seq1	LTRharvest	target_site_duplication	4826104	4826107	.	+	.	Parent=repeat_region157
###
seq1	LTRharvest	repeat_region	5040985	5048397	.	+	.	ID=repeat_region158
seq1	LTRharvest	target_site_duplication	5040985	5040988	.	+	.	Parent=repeat_region158
seq1	LTRharvest	LTR_retrotransposon	5040989	5048393	.	+	.	ID=LTR_retrotransposon158;Parent=repeat_region158;ltr_similarity=91.38;seq_number=1
seq1	LTRharvest	long_terminal_repeat	5040989	5041510	.	+	.	Parent=LTR_retrotransposon158
seq1	LTRdigest	primer_binding_site	5041516	5041530	3	+	.	Parent=LTR_retrotransposon158;trna=Arabidopsis_thaliana_tRNA-Lys-TTT-1-1 (chr1.trna180-LysTTT) chr1:29833117-29833188 (+) Lys (TTT) 72 bp Sc: 87.3;trnaoffset=0;pbsoffset=5;edist=1
seq1	LTRdigest	protein_match	5043491	5043968	2.4e-20	+	.	Parent=LTR_retrotransposon158;reading_frame=0;name=RVT_1
seq1	LTRharvest	long_terminal_repeat	5047894	5048393	.	+	.	Parent=LTR_retrotransposon158
seq1	LTRharvest	target_site_duplication	5048394	5048397	.	+	.	Parent=repeat_region158
###
seq1	LTRharvest	repeat_region	5073844	5078424	.	+	.	ID=repeat_region159
seq1	LTRharvest	target_site_duplication	5073844	5073847	.	+	.	Parent=repeat_region159
seq1	LTRharvest	LTR_retrotransposon	5073848	5078420	.	+	.	ID=LTR_retrotransposon159;Parent=repeat_region159;ltr_similarity=97.65;seq_number=1
seq1	LTRharvest	long_terminal_repeat	5073848	5074358	.	+	.	Parent=LTR_retrotransposon159
seq1	LTRdigest	protein_match	5075920	5076268	1.1e-20	+	.	Parent=LTR_retrotransposon159;reading_frame=2;name=rve
seq1	LTRdigest	RR_tract	5077882	5077889	.	+	.	Parent=LTR_retrotransposon159
seq1	LTRharvest	long_terminal_repeat	5077910	5078420	.	+	.	Parent=LTR_retrotransposon159
seq1	LTRharvest	target_site_duplication	5078421	5078424	.	+	.	Parent=repeat_region159
###
seq1	LTRharvest	repeat_region	5394706	5399654	.	+	.	ID=repeat_region160
seq1	LTRharvest	target_site_duplication	5394706	5394709	.	+	.	Parent=repeat_region160
seq1	LTRharvest	LTR_retrotransposon	5394710	5399650	.	+	.	ID=LTR_retrotransposon160;Parent=repeat_region160;ltr_similarity=95.11;seq_number=1
seq1	LTRharvest	long_terminal_repeat	5394710	5395036	.	+	.	Parent=LTR_retrotransposon160
seq1	LTRdigest	protein_match	5396314	5396647	2e-11	+	.	Parent=LTR_retrotransposon160;reading_frame=2;name=rve
seq1	LTRdigest	RR_tract	5399318	5399326	.	+	.	Parent=LTR_retrotransposon160
seq1	LTRharvest	long_terminal_repeat	5399326	5399650	.	+	.	Parent=LTR_retrotransposon160
seq1	LTRharvest	target_site_duplication	5399651	5399654	.	+	.	Parent=repeat_region160
###
seq1	LTRharvest	repeat_region	6023861	6032909	.	-	.	ID=repeat_region161
seq1	LTRharvest	target_site_duplication	6023861	6023867	.	-	.	Parent=repeat_region161
seq1	LTRharvest	LTR_retrotransposon	6023868	6032902	.	-	.	ID=LTR_retrotransposon161;Parent=repeat_region161;ltr_similarity=94.68;seq_number=1
seq1	LTRharvest	long_terminal_repeat	6023868	6024050	.	-	.	Parent=LTR_retrotransposon161
seq1	LTRdigest	RR_tract	6024024	6024032	.	-	.	Parent=LTR_retrotransposon161
seq1	LTRdigest	protein_match	6026557	6026803	2.1e-13	-	.	Parent=LTR_retrotransposon161;reading_frame=0;name=rve
seq1	LTRdigest	protein_match	6032042	6032336	7.3e-07	-	.	Parent=LTR_retrotransposon161;reading_frame=2;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	6032715	6032902	.	-	.	Parent=LTR_retrotransposon161
seq1	LTRharvest	target_site_duplication	6032903	6032909	.	-	.	Parent=repeat_region161
###
seq1	LTRharvest	repeat_region	6256491	6260940	.	+	.	ID=repeat_region162
seq1	LTRharvest	target_site_duplication	6256491	6256495	.	+	.	Parent=repeat_region162
seq1	LTRharvest	LTR_retrotransposon	6256496	6260935	.	+	.	ID=LTR_retrotransposon162;Parent=repeat_region162;ltr_similarity=93.57;seq_number=1
seq1	LTRharvest	long_terminal_repeat	6256496	6256663	.	+	.	Parent=LTR_retrotransposon162
seq1	LTRdigest	protein_match	6258663	6259053	8.1e-24	+	.	Parent=LTR_retrotransposon162;reading_frame=1;name=RVT_1
seq1	LTRdigest	protein_match	6259551	6259839	2.2e-09	+	.	Parent=LTR_retrotransposon162;reading_frame=1;name=rve
seq1	LTRharvest	long_terminal_repeat	6260765	6260935	.	+	.	Parent=LTR_retrotransposon162
seq1	LTRharvest	target_site_duplication	6260936	6260940	.	+	.	Parent=repeat_region162
###
seq1	LTRharvest	repeat_region	6422225	6427299	.	-	.	ID=repeat_region163
seq1	LTRharvest	target_site_duplication	6422225	6422228	.	-	.	Parent=repeat_region163
seq1	LTRharvest	LTR_retrotransposon	6422229	6427295	.	-	.	ID=LTR_retrotransposon163;Parent=repeat_region163;ltr_similarity=96.46;seq_number=1
seq1	LTRharvest	long_terminal_repeat	6422229	6422612	.	-	.	Parent=LTR_retrotransposon163
seq1	LTRdigest	protein_match	6425048	6425399	1.3e-22	-	.	Parent=LTR_retrotransposon163;reading_frame=0;name=rve
seq1	LTRdigest	protein_match	6426383	6426605	4.7e-09	-	.	Parent=LTR_retrotransposon163;reading_frame=0;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	6426901	6427295	.	-	.	Parent=LTR_retrotransposon163
seq1	LTRharvest	target_site_duplication	6427296	6427299	.	-	.	Parent=repeat_region163
###
seq1	LTRharvest	repeat_region	6819001	6823735	.	+	.	ID=repeat_region164
seq1	LTRharvest	target_site_duplication	6819001	6819005	.	+	.	Parent=repeat_region164
seq1	LTRharvest	LTR_retrotransposon	6819006	6823730	.	+	.	ID=LTR_retrotransposon164;Parent=repeat_region164;ltr_similarity=99.27;seq_number=1
seq1	LTRharvest	long_terminal_repeat	6819006	6819278	.	+	.	Parent=LTR_retrotransposon164
seq1	LTRdigest	protein_match	6820918	6821110	9.6e-07	+	.	Parent=LTR_retrotransposon164;reading_frame=1;name=rve
seq1	LTRdigest	protein_match	6821073	6821259	7.9e-14	+	.	Parent=LTR_retrotransposon164;reading_frame=0;name=rve
seq1	LTRdigest	RR_tract	6823450	6823458	.	+	.	Parent=LTR_retrotransposon164
seq1	LTRharvest	long_terminal_repeat	6823459	6823730	.	+	.	Parent=LTR_retrotransposon164
seq1	LTRharvest	target_site_duplication	6823731	6823735	.	+	.	Parent=repeat_region164
###
seq1	LTRharvest	repeat_region	6837310	6843326	.	+	.	ID=repeat_region165
seq1	LTRharvest	target_site_duplication	6837310	6837313	.	+	.	Parent=repeat_region165
seq1	LTRharvest	LTR_retrotransposon	6837314	6843322	.	+	.	ID=LTR_retrotransposon165;Parent=repeat_region165;ltr_similarity=92.16;seq_number=1
seq1	LTRharvest	long_terminal_repeat	6837314	6837734	.	+	.	Parent=LTR_retrotransposon165
seq1	LTRdigest	protein_match	6839346	6839634	7.4e-24	+	.	Parent=LTR_retrotransposon165;reading_frame=1;name=rve
seq1	LTRharvest	long_terminal_repeat	6842916	6843322	.	+	.	Parent=LTR_retrotransposon165
seq1	LTRharvest	target_site_duplication	6843323	6843326	.	+	.	Parent=repeat_region165
###
seq1	LTRharvest	repeat_region	6894102	6899942	.	-	.	ID=repeat_region166
seq1	LTRharvest	target_site_duplication	6894102	6894105	.	-	.	Parent=repeat_region166
seq1	LTRharvest	LTR_retrotransposon	6894106	6899938	.	-	.	ID=LTR_retrotransposon166;Parent=repeat_region166;ltr_similarity=73.71;seq_number=1
seq1	LTRharvest	long_terminal_repeat	6894106	6894337	.	-	.	Parent=LTR_retrotransposon166
seq1	LTRdigest	RR_tract	6894336	6894349	.	-	.	Parent=LTR_retrotransposon166
seq1	LTRharvest	long_terminal_repeat	6899735	6899938	.	-	.	Parent=LTR_retrotransposon166
seq1	LTRharvest	target_site_duplication	6899939	6899942	.	-	.	Parent=repeat_region166
###
seq1	LTRharvest	repeat_region	7157621	7166653	.	+	.	ID=repeat_region167
seq1	LTRharvest	target_site_duplication	7157621	7157624	.	+	.	Parent=repeat_region167
seq1	LTRharvest	LTR_retrotransposon	7157625	7166649	.	+	.	ID=LTR_retrotransposon167;Parent=repeat_region167;ltr_similarity=90.24;seq_number=1
seq1	LTRharvest	long_terminal_repeat	7157625	7157919	.	+	.	Parent=LTR_retrotransposon167
seq1	LTRdigest	RR_tract	7166351	7166360	.	+	.	Parent=LTR_retrotransposon167
seq1	LTRharvest	long_terminal_repeat	7166353	7166649	.	+	.	Parent=LTR_retrotransposon167
seq1	LTRharvest	target_site_duplication	7166650	7166653	.	+	.	Parent=repeat_region167
###
seq1	LTRharvest	repeat_region	7224080	7229142	.	-	.	ID=repeat_region168
seq1	LTRharvest	target_site_duplication	7224080	7224083	.	-	.	Parent=repeat_region168
seq1	LTRharvest	LTR_retrotransposon	7224084	7229138	.	-	.	ID=LTR_retrotransposon168;Parent=repeat_region168;ltr_similarity=89.81;seq_number=1
seq1	LTRharvest	long_terminal_repeat	7224084	7224333	.	-	.	Parent=LTR_retrotransposon168
seq1	LTRdigest	protein_match	7226752	7227085	2.7e-17	-	.	Parent=LTR_retrotransposon168;reading_frame=1;name=rve
seq1	LTRdigest	protein_match	7228309	7228483	6.9e-09	-	.	Parent=LTR_retrotransposon168;reading_frame=1;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	7228874	7229138	.	-	.	Parent=LTR_retrotransposon168
seq1	LTRharvest	target_site_duplication	7229139	7229142	.	-	.	Parent=repeat_region168
###
seq1	LTRharvest	repeat_region	7373360	7379272	.	?	.	ID=repeat_region169
seq1	LTRharvest	target_site_duplication	7373360	7373363	.	?	.	Parent=repeat_region169
seq1	LTRharvest	LTR_retrotransposon	7373364	7379268	.	?	.	ID=LTR_retrotransposon169;Parent=repeat_region169;ltr_similarity=89.74;seq_number=1
seq1	LTRharvest	long_terminal_repeat	7373364	7373475	.	?	.	Parent=LTR_retrotransposon169
seq1	LTRharvest	long_terminal_repeat	7379152	7379268	.	?	.	Parent=LTR_retrotransposon169
seq1	LTRharvest	target_site_duplication	7379269	7379272	.	?	.	Parent=repeat_region169
###
seq1	LTRharvest	repeat_region	7448758	7454294	.	-	.	ID=repeat_region170
seq1	LTRharvest	target_site_duplication	7448758	7448761	.	-	.	Parent=repeat_region170
seq1	LTRharvest	LTR_retrotransposon	7448762	7454290	.	-	.	ID=LTR_retrotransposon170;Parent=repeat_region170;ltr_similarity=98.26;seq_number=1
seq1	LTRharvest	long_terminal_repeat	7448762	7448932	.	-	.	Parent=LTR_retrotransposon170
seq1	LTRdigest	protein_match	7451572	7451908	8.1e-15	-	.	Parent=LTR_retrotransposon170;reading_frame=0;name=rve
seq1	LTRdigest	protein_match	7453241	7453586	8e-12	-	.	Parent=LTR_retrotransposon170;reading_frame=2;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	7454119	7454290	.	-	.	Parent=LTR_retrotransposon170
seq1	LTRharvest	target_site_duplication	7454291	7454294	.	-	.	Parent=repeat_region170
###
seq1	LTRharvest	repeat_region	8697235	8702074	.	?	.	ID=repeat_region171
seq1	LTRharvest	target_site_duplication	8697235	8697238	.	?	.	Parent=repeat_region171
seq1	LTRharvest	LTR_retrotransposon	8697239	8702070	.	?	.	ID=LTR_retrotransposon171;Parent=repeat_region171;ltr_similarity=80.08;seq_number=1
seq1	LTRharvest	long_terminal_repeat	8697239	8697479	.	?	.	Parent=LTR_retrotransposon171
seq1	LTRharvest	long_terminal_repeat	8701830	8702070	.	?	.	Parent=LTR_retrotransposon171
seq1	LTRharvest	target_site_duplication	8702071	8702074	.	?	.	Parent=repeat_region171
###
seq1	LTRharvest	repeat_region	8816045	8820898	.	-	.	ID=repeat_region172
seq1	LTRharvest	target_site_duplication	8816045	8816048	.	-	.	Parent=repeat_region172
seq1	LTRharvest	LTR_retrotransposon	8816049	8820894	.	-	.	ID=LTR_retrotransposon172;Parent=repeat_region172;ltr_similarity=94.79;seq_number=1
seq1	LTRharvest	long_terminal_repeat	8816049	8816235	.	-	.	Parent=LTR_retrotransposon172
seq1	LTRdigest	RR_tract	8816255	8816263	.	-	.	Parent=LTR_retrotransposon172
seq1	LTRdigest	protein_match	8818423	8818750	1.7e-20	-	.	Parent=LTR_retrotransposon172;reading_frame=2;name=rve
seq1	LTRdigest	protein_match	8819902	8820226	4.7e-26	-	.	Parent=LTR_retrotransposon172;reading_frame=2;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	8820703	8820894	.	-	.	Parent=LTR_retrotransposon172
seq1	LTRharvest	target_site_duplication	8820895	8820898	.	-	.	Parent=repeat_region172
###
seq1	LTRharvest	repeat_region	8873013	8891289	.	+	.	ID=repeat_region173
seq1	LTRharvest	target_site_duplication	8873013	8873016	.	+	.	Parent=repeat_region173
seq1	LTRharvest	LTR_retrotransposon	8873017	8891285	.	+	.	ID=LTR_retrotransposon173;Parent=repeat_region173;ltr_similarity=92.70;seq_number=1
seq1	LTRharvest	long_terminal_repeat	8873017	8873153	.	+	.	Parent=LTR_retrotransposon173
seq1	LTRdigest	RR_tract	8891137	8891158	.	+	.	Parent=LTR_retrotransposon173
seq1	LTRharvest	long_terminal_repeat	8891150	8891285	.	+	.	Parent=LTR_retrotransposon173
seq1	LTRharvest	target_site_duplication	8891286	8891289	.	+	.	Parent=repeat_region173
###
seq1	LTRharvest	repeat_region	9187488	9195284	.	-	.	ID=repeat_region174
seq1	LTRharvest	target_site_duplication	9187488	9187491	.	-	.	Parent=repeat_region174
seq1	LTRharvest	LTR_retrotransposon	9187492	9195280	.	-	.	ID=LTR_retrotransposon174;Parent=repeat_region174;ltr_similarity=98.63;seq_number=1
seq1	LTRharvest	long_terminal_repeat	9187492	9188217	.	-	.	Parent=LTR_retrotransposon174
seq1	LTRdigest	protein_match	9189228	9189357	2.8e-05	-	.	Parent=LTR_retrotransposon174;reading_frame=1;name=RVT_1
seq1	LTRdigest	protein_match	9190569	9190914	1.6e-23	-	.	Parent=LTR_retrotransposon174;reading_frame=1;name=rve
seq1	LTRharvest	long_terminal_repeat	9194552	9195280	.	-	.	Parent=LTR_retrotransposon174
seq1	LTRharvest	target_site_duplication	9195281	9195284	.	-	.	Parent=repeat_region174
###
seq1	LTRharvest	repeat_region	9306568	9319038	.	?	.	ID=repeat_region175
seq1	LTRharvest	target_site_duplication	9306568	9306571	.	?	.	Parent=repeat_region175
seq1	LTRharvest	LTR_retrotransposon	9306572	9319034	.	?	.	ID=LTR_retrotransposon175;Parent=repeat_region175;ltr_similarity=82.21;seq_number=1
seq1	LTRharvest	long_terminal_repeat	9306572	9306734	.	?	.	Parent=LTR_retrotransposon175
seq1	LTRharvest	long_terminal_repeat	9318881	9319034	.	?	.	Parent=LTR_retrotransposon175
seq1	LTRharvest	target_site_duplication	9319035	9319038	.	?	.	Parent=repeat_region175
###
seq1	LTRharvest	repeat_region	9927677	9932563	.	-	.	ID=repeat_region176
seq1	LTRharvest	target_site_duplication	9927677	9927680	.	-	.	Parent=repeat_region176
seq1	LTRharvest	LTR_retrotransposon	9927681	9932559	.	-	.	ID=LTR_retrotransposon176;Parent=repeat_region176;ltr_similarity=95.07;seq_number=1
seq1	LTRharvest	long_terminal_repeat	9927681	9927822	.	-	.	Parent=LTR_retrotransposon176
seq1	LTRdigest	RR_tract	9927842	9927853	.	-	.	Parent=LTR_retrotransposon176
seq1	LTRdigest	protein_match	9930318	9930651	1.8e-23	-	.	Parent=LTR_retrotransposon176;reading_frame=0;name=rve
seq1	LTRdigest	protein_match	9931740	9932052	6.1e-08	-	.	Parent=LTR_retrotransposon176;reading_frame=0;name=Retrotrans_gag
seq1	LTRharvest	long_terminal_repeat	9932425	9932559	.	-	.	Parent=LTR_retrotransposon176
seq1	LTRharvest	target_site_duplication	9932560	9932563	.	-	.	Parent=repeat_region176
###
seq1	LTRharvest	repeat_region	10464644	10471485	.	?	.	ID=repeat_region177
seq1	LTRharvest	target_site_duplication	10464644	10464647	.	?	.	Parent=repeat_region177
seq1	LTRharvest	LTR_retrotransposon	10464648	10471481	.	?	.	ID=LTR_retrotransposon177;Parent=repeat_region177;ltr_similarity=84.97;seq_number=1
seq1	LTRharvest	long_terminal_repeat	10464648	10464800	.	?	.	Parent=LTR_retrotransposon177
seq1	LTRharvest	long_terminal_repeat	10471341	10471481	.	?	.	Parent=LTR_retrotransposon177
seq1	LTRharvest	target_site_duplication	10471482	10471485	.	?	.	Parent=repeat_region177
###
seq1	LTRharvest	repeat_region	10483662	10492022	.	-	.	ID=repeat_region178
seq1	LTRharvest	target_site_duplication	10483662	10483665	.	-	.	Parent=repeat_region178
seq1	LTRharvest	LTR_retrotransposon	10483666	10492018	.	-	.	ID=LTR_retrotransposon178;Parent=repeat_region178;ltr_similarity=84.87;seq_number=1
seq1	LTRharvest	long_terminal_repeat	10483666	10483784	.	-	.	Parent=LTR_retrotransposon178
seq1	LTRdigest	protein_match	10491068	10491401	1.3e-23	-	.	Parent=LTR_retrotransposon178;reading_frame=2;name=rve
seq1	LTRharvest	long_terminal_repeat	10491916	10492018	.	-	.	Parent=LTR_retrotransposon178
seq1	LTRharvest	target_site_duplication	10492019	10492022	.	-	.	Parent=repeat_region178
###
seq1	LTRharvest	repeat_region	10637407	10647339	.	?	.	ID=repeat_region179
seq1	LTRharvest	target_site_duplication	10637407	10637410	.	?	.	Parent=repeat_region179
seq1	LTRharvest	LTR_retrotransposon	10637411	10647335	.	?	.	ID=LTR_retrotransposon179;Parent=repeat_region179;ltr_similarity=77.35;seq_number=1
seq1	LTRharvest	long_terminal_repeat	10637411	10637719	.	?	.	Parent=LTR_retrotransposon179
seq1	LTRharvest	long_terminal_repeat	10647045	10647335	.	?	.	Parent=LTR_retrotransposon179
seq1	LTRharvest	target_site_duplication	10647336	10647339	.	?	.	Parent=repeat_region179
###
seq1	LTRharvest	repeat_region	11435727	11443095	.	?	.	ID=repeat_region180
seq1	LTRharvest	target_site_duplication	11435727	11435731	.	?	.	Parent=repeat_region180
seq1	LTRharvest	LTR_retrotransposon	11435732	11443090	.	?	.	ID=LTR_retrotransposon180;Parent=repeat_region180;ltr_similarity=90.28;seq_number=1
seq1	LTRharvest	long_terminal_repeat	11435732	11436262	.	?	.	Parent=LTR_retrotransposon180
seq1	LTRharvest	long_terminal_repeat	11442556	11443090	.	?	.	Parent=LTR_retrotransposon180
seq1	LTRharvest	target_site_duplication	11443091	11443095	.	?	.	Parent=repeat_region180
###
seq1	LTRharvest	repeat_region	11721101	11726619	.	-	.	ID=repeat_region181
seq1	LTRharvest	target_site_duplication	11721101	11721104	.	-	.	Parent=repeat_region181
seq1	LTRharvest	LTR_retrotransposon	11721105	11726615	.	-	.	ID=LTR_retrotransposon181;Parent=repeat_region181;ltr_similarity=88.24;seq_number=1
seq1	LTRharvest	long_terminal_repeat	11721105	11721325	.	-	.	Parent=LTR_retrotransposon181
seq1	LTRdigest	primer_binding_site	11726393	11726403	10.9	-	.	Parent=LTR_retrotransposon181;trna=Arabidopsis_thaliana_tRNA-Ser-GCT-9-2 (chr2.trna13-SerGCT) chr2:3494382-3494469 (+) Ser (GCT) 88 bp Sc: 43.1;trnaoffset=1;pbsoffset=0;edist=1
seq1	LTRharvest	long_terminal_repeat	11726404	11726615	.	-	.	Parent=LTR_retrotransposon181
seq1	LTRharvest	target_site_duplication	11726616	11726619	.	-	.	Parent=repeat_region181
###
seq1	LTRharvest	repeat_region	12445630	12457169	.	-	.	ID=repeat_region182
seq1	LTRharvest	target_site_duplication	12445630	12445634	.	-	.	Parent=repeat_region182
seq1	LTRharvest	LTR_retrotransposon	12445635	12457164	.	-	.	ID=LTR_retrotransposon182;Parent=repeat_region182;ltr_similarity=72.96;seq_number=1
seq1	LTRharvest	long_terminal_repeat	12445635	12445793	.	-	.	Parent=LTR_retrotransposon182
seq1	LTRdigest	protein_match	12450706	12451486	0	-	.	Parent=LTR_retrotransposon182;reading_frame=2;name=RVT_1
seq1	LTRharvest	long_terminal_repeat	12457017	12457164	.	-	.	Parent=LTR_retrotransposon182
seq1	LTRharvest	target_site_duplication	12457165	12457169	.	-	.	Parent=repeat_region182
###
seq1	LTRharvest	repeat_region	12620239	12625081	.	-	.	ID=repeat_region183
seq1	LTRharvest	target_site_duplication	12620239	12620242	.	-	.	Parent=repeat_region183
seq1	LTRharvest	LTR_retrotransposon	12620243	12625077	.	-	.	ID=LTR_retrotransposon183;Parent=repeat_region183;ltr_similarity=79.48;seq_number=1
seq1	LTRharvest	long_terminal_repeat	12620243	12620452	.	-	.	Parent=LTR_retrotransposon183
seq1	LTRdigest	RR_tract	12620461	12620477	.	-	.	Parent=LTR_retrotransposon183
seq1	LTRharvest	long_terminal_repeat	12624849	12625077	.	-	.	Parent=LTR_retrotransposon183
seq1	LTRharvest	target_site_duplication	12625078	12625081	.	-	.	Parent=repeat_region183
###
seq1	LTRharvest	repeat_region	13508549	13515943	.	+	.	ID=repeat_region184
seq1	LTRharvest	target_site_duplication	13508549	13508553	.	+	.	Parent=repeat_region184
seq1	LTRharvest	LTR_retrotransposon	13508554	13515938	.	+	.	ID=LTR_retrotransposon184;Parent=repeat_region184;ltr_similarity=94.23;seq_number=1
seq1	LTRharvest	long_terminal_repeat	13508554	13509170	.	+	.	Parent=LTR_retrotransposon184
seq1	LTRdigest	RR_tract	13515291	13515302	.	+	.	Parent=LTR_retrotransposon184
seq1	LTRharvest	long_terminal_repeat	13515315	13515938	.	+	.	Parent=LTR_retrotransposon184
seq1	LTRharvest	target_site_duplication	13515939	13515943	.	+	.	Parent=repeat_region184
###
seq1	LTRharvest	repeat_region	13664988	13669874	.	?	.	ID=repeat_region185
seq1	LTRharvest	target_site_duplication	13664988	13664991	.	?	.	Parent=repeat_region185
seq1	LTRharvest	LTR_retrotransposon	13664992	13669870	.	?	.	ID=LTR_retrotransposon185;Parent=repeat_region185;ltr_similarity=77.78;seq_number=1
seq1	LTRharvest	long_terminal_repeat	13664992	13665113	.	?	.	Parent=LTR_retrotransposon185
seq1	LTRharvest	long_terminal_repeat	13669727	13669870	.	?	.	Parent=LTR_retrotransposon185
seq1	LTRharvest	target_site_duplication	13669871	13669874	.	?	.	Parent=repeat_region185
###
seq1	LTRharvest	repeat_region	14026296	14032823	.	-	.	ID=repeat_region186
seq1	LTRharvest	target_site_duplication	14026296	14026299	.	-	.	Parent=repeat_region186
seq1	LTRharvest	LTR_retrotransposon	14026300	14032819	.	-	.	ID=LTR_retrotransposon186;Parent=repeat_region186;ltr_similarity=83.23;seq_number=1
seq1	LTRharvest	long_terminal_repeat	14026300	14026466	.	-	.	Parent=LTR_retrotransposon186
seq1	LTRdigest	RR_tract	14026443	14026458	.	-	.	Parent=LTR_retrotransposon186
seq1	LTRharvest	long_terminal_repeat	14032657	14032819	.	-	.	Parent=LTR_retrotransposon186
seq1	LTRharvest	target_site_duplication	14032820	14032823	.	-	.	Parent=repeat_region186
###
seq1	LTRharvest	repeat_region	14406567	14412859	.	?	.	ID=repeat_region187
seq1	LTRharvest	target_site_duplication	14406567	14406570	.	?	.	Parent=repeat_region187
seq1	LTRharvest	LTR_retrotransposon	14406571	14412855	.	?	.	ID=LTR_retrotransposon187;Parent=repeat_region187;ltr_similarity=84.00;seq_number=1
seq1	LTRharvest	long_terminal_repeat	14406571	14406688	.	?	.	Parent=LTR_retrotransposon187
seq1	LTRharvest	long_terminal_repeat	14412731	14412855	.	?	.	Parent=LTR_retrotransposon187
seq1	LTRharvest	target_site_duplication	14412856	14412859	.	?	.	Parent=repeat_region187
###
seq1	LTRharvest	repeat_region	16280708	16302424	.	?	.	ID=repeat_region188
seq1	LTRharvest	target_site_duplication	16280708	16280711	.	?	.	Parent=repeat_region188
seq1	LTRharvest	LTR_retrotransposon	16280712	16302420	.	?	.	ID=LTR_retrotransposon188;Parent=repeat_region188;ltr_similarity=77.68;seq_number=1
seq1	LTRharvest	long_terminal_repeat	16280712	16280937	.	?	.	Parent=LTR_retrotransposon188
seq1	LTRharvest	long_terminal_repeat	16302188	16302420	.	?	.	Parent=LTR_retrotransposon188
seq1	LTRharvest	target_site_duplication	16302421	16302424	.	?	.	Parent=repeat_region188
###
seq1	LTRharvest	repeat_region	17136144	17141215	.	+	.	ID=repeat_region189
seq1	LTRharvest	target_site_duplication	17136144	17136147	.	+	.	Parent=repeat_region189
seq1	LTRharvest	LTR_retrotransposon	17136148	17141211	.	+	.	ID=LTR_retrotransposon189;Parent=repeat_region189;ltr_similarity=80.56;seq_number=1
seq1	LTRharvest	long_terminal_repeat	17136148	17136399	.	+	.	Parent=LTR_retrotransposon189
seq1	LTRdigest	RR_tract	17140965	17140978	.	+	.	Parent=LTR_retrotransposon189
seq1	LTRharvest	long_terminal_repeat	17140974	17141211	.	+	.	Parent=LTR_retrotransposon189
seq1	LTRharvest	target_site_duplication	17141212	17141215	.	+	.	Parent=repeat_region189
###
seq1	LTRharvest	repeat_region	17252345	17258541	.	?	.	ID=repeat_region190
seq1	LTRharvest	target_site_duplication	17252345	17252348	.	?	.	Parent=repeat_region190
seq1	LTRharvest	LTR_retrotransposon	17252349	17258537	.	?	.	ID=LTR_retrotransposon190;Parent=repeat_region190;ltr_similarity=88.03;seq_number=1
seq1	LTRharvest	long_terminal_repeat	17252349	17252487	.	?	.	Parent=LTR_retrotransposon190
seq1	LTRharvest	long_terminal_repeat	17258396	17258537	.	?	.	Parent=LTR_retrotransposon190
seq1	LTRharvest	target_site_duplication	17258538	17258541	.	?	.	Parent=repeat_region190
###
seq1	LTRharvest	repeat_region	17270933	17278591	.	-	.	ID=repeat_region191
seq1	LTRharvest	target_site_duplication	17270933	17270936	.	-	.	Parent=repeat_region191
seq1	LTRharvest	LTR_retrotransposon	17270937	17278587	.	-	.	ID=LTR_retrotransposon191;Parent=repeat_region191;ltr_similarity=95.81;seq_number=1
seq1	LTRharvest	long_terminal_repeat	17270937	17271603	.	-	.	Parent=LTR_retrotransposon191
seq1	LTRdigest	RR_tract	17271597	17271607	.	-	.	Parent=LTR_retrotransposon191
seq1	LTRharvest	long_terminal_repeat	17277920	17278587	.	-	.	Parent=LTR_retrotransposon191
seq1	LTRharvest	target_site_duplication	17278588	17278591	.	-	.	Parent=repeat_region191
###
seq1	LTRharvest	repeat_region	17676475	17684205	.	?	.	ID=repeat_region192
seq1	LTRharvest	target_site_duplication	17676475	17676478	.	?	.	Parent=repeat_region192
seq1	LTRharvest	LTR_retrotransposon	17676479	17684201	.	?	.	ID=LTR_retrotransposon192;Parent=repeat_region192;ltr_similarity=78.26;seq_number=1
seq1	LTRharvest	long_terminal_repeat	17676479	17676616	.	?	.	Parent=LTR_retrotransposon192
seq1	LTRharvest	long_terminal_repeat	17684065	17684201	.	?	.	Parent=LTR_retrotransposon192
seq1	LTRharvest	target_site_duplication	17684202	17684205	.	?	.	Parent=repeat_region192
###
seq1	LTRharvest	repeat_region	18347442	18355359	.	?	.	ID=repeat_region193
seq1	LTRharvest	target_site_duplication	18347442	18347445	.	?	.	Parent=repeat_region193
seq1	LTRharvest	LTR_retrotransposon	18347446	18355355	.	?	.	ID=LTR_retrotransposon193;Parent=repeat_region193;ltr_similarity=85.27;seq_number=1
seq1	LTRharvest	long_terminal_repeat	18347446	18347574	.	?	.	Parent=LTR_retrotransposon193
seq1	LTRharvest	long_terminal_repeat	18355230	18355355	.	?	.	Parent=LTR_retrotransposon193
seq1	LTRharvest	target_site_duplication	18355356	18355359	.	?	.	Parent=repeat_region193
###
seq1	LTRharvest	repeat_region	18659183	18664906	.	?	.	ID=repeat_region194
seq1	LTRharvest	target_site_duplication	18659183	18659186	.	?	.	Parent=repeat_region194
seq1	LTRharvest	LTR_retrotransposon	18659187	18664902	.	?	.	ID=LTR_retrotransposon194;Parent=repeat_region194;ltr_similarity=95.87;seq_number=1
seq1	LTRharvest	long_terminal_repeat	18659187	18659607	.	?	.	Parent=LTR_retrotransposon194
seq1	LTRharvest	long_terminal_repeat	18664467	18664902	.	?	.	Parent=LTR_retrotransposon194
seq1	LTRharvest	target_site_duplication	18664903	18664906	.	?	.	Parent=repeat_region194
###
seq2	LTRharvest	repeat_region	780900	798853	.	-	.	ID=repeat_region195
seq2	LTRharvest	target_site_duplication	780900	780903	.	-	.	Parent=repeat_region195
seq2	LTRharvest	LTR_retrotransposon	780904	798849	.	-	.	ID=LTR_retrotransposon195;Parent=repeat_region195;ltr_similarity=95.42;seq_number=2
seq2	LTRharvest	long_terminal_repeat	780904	781187	.	-	.	Parent=LTR_retrotransposon195
seq2	LTRdigest	RR_tract	781206	781213	.	-	.	Parent=LTR_retrotransposon195
seq2	LTRharvest	long_terminal_repeat	798567	798849	.	-	.	Parent=LTR_retrotransposon195
seq2	LTRharvest	target_site_duplication	798850	798853	.	-	.	Parent=repeat_region195
###
seq2	LTRharvest	repeat_region	1526146	1535735	.	?	.	ID=repeat_region196
seq2	LTRharvest	target_site_duplication	1526146	1526150	.	?	.	Parent=repeat_region196
seq2	LTRharvest	LTR_retrotransposon	1526151	1535730	.	?	.	ID=LTR_retrotransposon196;Parent=repeat_region196;ltr_similarity=98.03;seq_number=2
seq2	LTRharvest	long_terminal_repeat	1526151	1526758	.	?	.	Parent=LTR_retrotransposon196
seq2	LTRharvest	long_terminal_repeat	1535129	1535730	.	?	.	Parent=LTR_retrotransposon196
seq2	LTRharvest	target_site_duplication	1535731	1535735	.	?	.	Parent=repeat_region196
###
seq2	LTRharvest	repeat_region	1657647	1681993	.	?	.	ID=repeat_region197
seq2	LTRharvest	target_site_duplication	1657647	1657650	.	?	.	Parent=repeat_region197
seq2	LTRharvest	LTR_retrotransposon	1657651	1681989	.	?	.	ID=LTR_retrotransposon197;Parent=repeat_region197;ltr_similarity=93.02;seq_number=2
seq2	LTRharvest	long_terminal_repeat	1657651	1657943	.	?	.	Parent=LTR_retrotransposon197
seq2	LTRharvest	long_terminal_repeat	1681689	1681989	.	?	.	Parent=LTR_retrotransposon197
seq2	LTRharvest	target_site_duplication	1681990	1681993	.	?	.	Parent=repeat_region197
###
seq2	LTRharvest	repeat_region	3110401	3124910	.	+	.	ID=repeat_region198
seq2	LTRharvest	target_site_duplication	3110401	3110404	.	+	.	Parent=repeat_region198
seq2	LTRharvest	LTR_retrotransposon	3110405	3124906	.	+	.	ID=LTR_retrotransposon198;Parent=repeat_region198;ltr_similarity=98.06;seq_number=2
seq2	LTRharvest	long_terminal_repeat	3110405	3110659	.	+	.	Parent=LTR_retrotransposon198
seq2	LTRharvest	long_terminal_repeat	3124649	3124906	.	+	.	Parent=LTR_retrotransposon198
seq2	LTRdigest	RR_tract	3124656	3124668	.	+	.	Parent=LTR_retrotransposon198
seq2	LTRharvest	target_site_duplication	3124907	3124910	.	+	.	Parent=repeat_region198
###
seq2	LTRharvest	repeat_region	3807301	3812648	.	-	.	ID=repeat_region199
seq2	LTRharvest	target_site_duplication	3807301	3807305	.	-	.	Parent=repeat_region199
seq2	LTRharvest	LTR_retrotransposon	3807306	3812643	.	-	.	ID=LTR_retrotransposon199;Parent=repeat_region199;ltr_similarity=99.74;seq_number=2
seq2	LTRharvest	long_terminal_repeat	3807306	3807689	.	-	.	Parent=LTR_retrotransposon199
seq2	LTRdigest	protein_match	3808437	3808761	3.9e-15	-	.	Parent=LTR_retrotransposon199;reading_frame=0;name=rve
seq2	LTRdigest	protein_match	3809820	3810297	5.1e-33	-	.	Parent=LTR_retrotransposon199;reading_frame=0;name=RVT_1
seq2	LTRdigest	protein_match	3811518	3811794	4.1e-15	-	.	Parent=LTR_retrotransposon199;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	3812260	3812643	.	-	.	Parent=LTR_retrotransposon199
seq2	LTRharvest	target_site_duplication	3812644	3812648	.	-	.	Parent=repeat_region199
###
seq2	LTRharvest	repeat_region	6188736	6193288	.	?	.	ID=repeat_region200
seq2	LTRharvest	target_site_duplication	6188736	6188740	.	?	.	Parent=repeat_region200
seq2	LTRharvest	LTR_retrotransposon	6188741	6193283	.	?	.	ID=LTR_retrotransposon200;Parent=repeat_region200;ltr_similarity=79.08;seq_number=2
seq2	LTRharvest	long_terminal_repeat	6188741	6188975	.	?	.	Parent=LTR_retrotransposon200
seq2	LTRharvest	long_terminal_repeat	6193045	6193283	.	?	.	Parent=LTR_retrotransposon200
seq2	LTRharvest	target_site_duplication	6193284	6193288	.	?	.	Parent=repeat_region200
###
seq2	LTRharvest	repeat_region	6372405	6378611	.	+	.	ID=repeat_region201
seq2	LTRharvest	target_site_duplication	6372405	6372408	.	+	.	Parent=repeat_region201
seq2	LTRharvest	LTR_retrotransposon	6372409	6378607	.	+	.	ID=LTR_retrotransposon201;Parent=repeat_region201;ltr_similarity=98.71;seq_number=2
seq2	LTRharvest	long_terminal_repeat	6372409	6373650	.	+	.	Parent=LTR_retrotransposon201
seq2	LTRharvest	long_terminal_repeat	6377363	6378607	.	+	.	Parent=LTR_retrotransposon201
seq2	LTRdigest	RR_tract	6377366	6377380	.	+	.	Parent=LTR_retrotransposon201
seq2	LTRharvest	target_site_duplication	6378608	6378611	.	+	.	Parent=repeat_region201
###
seq2	LTRharvest	repeat_region	7354081	7359063	.	+	.	ID=repeat_region202
seq2	LTRharvest	target_site_duplication	7354081	7354084	.	+	.	Parent=repeat_region202
seq2	LTRharvest	LTR_retrotransposon	7354085	7359059	.	+	.	ID=LTR_retrotransposon202;Parent=repeat_region202;ltr_similarity=80.30;seq_number=2
seq2	LTRharvest	long_terminal_repeat	7354085	7354208	.	+	.	Parent=LTR_retrotransposon202
seq2	LTRharvest	long_terminal_repeat	7358928	7359059	.	+	.	Parent=LTR_retrotransposon202
seq2	LTRdigest	RR_tract	7358943	7358952	.	+	.	Parent=LTR_retrotransposon202
seq2	LTRharvest	target_site_duplication	7359060	7359063	.	+	.	Parent=repeat_region202
###
seq2	LTRharvest	repeat_region	7728272	7733248	.	-	.	ID=repeat_region203
seq2	LTRharvest	target_site_duplication	7728272	7728275	.	-	.	Parent=repeat_region203
seq2	LTRharvest	LTR_retrotransposon	7728276	7733244	.	-	.	ID=LTR_retrotransposon203;Parent=repeat_region203;ltr_similarity=76.08;seq_number=2
seq2	LTRharvest	long_terminal_repeat	7728276	7728484	.	-	.	Parent=LTR_retrotransposon203
seq2	LTRdigest	RR_tract	7728479	7728488	.	-	.	Parent=LTR_retrotransposon203
seq2	LTRharvest	long_terminal_repeat	7733049	7733244	.	-	.	Parent=LTR_retrotransposon203
seq2	LTRharvest	target_site_duplication	7733245	7733248	.	-	.	Parent=repeat_region203
###
seq2	LTRharvest	repeat_region	7760611	7765160	.	-	.	ID=repeat_region204
seq2	LTRharvest	target_site_duplication	7760611	7760614	.	-	.	Parent=repeat_region204
seq2	LTRharvest	LTR_retrotransposon	7760615	7765156	.	-	.	ID=LTR_retrotransposon204;Parent=repeat_region204;ltr_similarity=82.01;seq_number=2
seq2	LTRharvest	long_terminal_repeat	7760615	7760748	.	-	.	Parent=LTR_retrotransposon204
seq2	LTRdigest	RR_tract	7760721	7760729	.	-	.	Parent=LTR_retrotransposon204
seq2	LTRharvest	long_terminal_repeat	7765018	7765156	.	-	.	Parent=LTR_retrotransposon204
seq2	LTRharvest	target_site_duplication	7765157	7765160	.	-	.	Parent=repeat_region204
###
seq2	LTRharvest	repeat_region	8046318	8051050	.	-	.	ID=repeat_region205
seq2	LTRharvest	target_site_duplication	8046318	8046322	.	-	.	Parent=repeat_region205
seq2	LTRharvest	LTR_retrotransposon	8046323	8051045	.	-	.	ID=LTR_retrotransposon205;Parent=repeat_region205;ltr_similarity=84.62;seq_number=2
seq2	LTRharvest	long_terminal_repeat	8046323	8046439	.	-	.	Parent=LTR_retrotransposon205
seq2	LTRdigest	RR_tract	8046441	8046449	.	-	.	Parent=LTR_retrotransposon205
seq2	LTRharvest	long_terminal_repeat	8050937	8051045	.	-	.	Parent=LTR_retrotransposon205
seq2	LTRharvest	target_site_duplication	8051046	8051050	.	-	.	Parent=repeat_region205
###
seq2	LTRharvest	repeat_region	8537350	8543564	.	+	.	ID=repeat_region206
seq2	LTRharvest	target_site_duplication	8537350	8537354	.	+	.	Parent=repeat_region206
seq2	LTRharvest	LTR_retrotransposon	8537355	8543559	.	+	.	ID=LTR_retrotransposon206;Parent=repeat_region206;ltr_similarity=96.96;seq_number=2
seq2	LTRharvest	long_terminal_repeat	8537355	8538176	.	+	.	Parent=LTR_retrotransposon206
seq2	LTRdigest	protein_match	8538870	8539161	7.6e-24	+	.	Parent=LTR_retrotransposon206;reading_frame=0;name=Retrotrans_gag
seq2	LTRdigest	protein_match	8540410	8540641	8.5e-14	+	.	Parent=LTR_retrotransposon206;reading_frame=1;name=RVT_1
seq2	LTRdigest	protein_match	8540670	8540889	1.8e-15	+	.	Parent=LTR_retrotransposon206;reading_frame=0;name=RVT_1
seq2	LTRdigest	protein_match	8541922	8542138	1e-07	+	.	Parent=LTR_retrotransposon206;reading_frame=1;name=rve
seq2	LTRdigest	RR_tract	8542729	8542737	.	+	.	Parent=LTR_retrotransposon206
seq2	LTRharvest	long_terminal_repeat	8542738	8543559	.	+	.	Parent=LTR_retrotransposon206
seq2	LTRharvest	target_site_duplication	8543560	8543564	.	+	.	Parent=repeat_region206
###
seq2	LTRharvest	repeat_region	8632389	8638604	.	?	.	ID=repeat_region207
seq2	LTRharvest	target_site_duplication	8632389	8632392	.	?	.	Parent=repeat_region207
seq2	LTRharvest	LTR_retrotransposon	8632393	8638600	.	?	.	ID=LTR_retrotransposon207;Parent=repeat_region207;ltr_similarity=80.49;seq_number=2
seq2	LTRharvest	long_terminal_repeat	8632393	8632546	.	?	.	Parent=LTR_retrotransposon207
seq2	LTRharvest	long_terminal_repeat	8638437	8638600	.	?	.	Parent=LTR_retrotransposon207
seq2	LTRharvest	target_site_duplication	8638601	8638604	.	?	.	Parent=repeat_region207
###
seq2	LTRharvest	repeat_region	9226628	9231382	.	+	.	ID=repeat_region208
seq2	LTRharvest	target_site_duplication	9226628	9226632	.	+	.	Parent=repeat_region208
seq2	LTRharvest	LTR_retrotransposon	9226633	9231377	.	+	.	ID=LTR_retrotransposon208;Parent=repeat_region208;ltr_similarity=98.97;seq_number=2
seq2	LTRharvest	long_terminal_repeat	9226633	9226922	.	+	.	Parent=LTR_retrotransposon208
seq2	LTRdigest	protein_match	9228524	9228866	8.7e-28	+	.	Parent=LTR_retrotransposon208;reading_frame=1;name=rve
seq2	LTRdigest	RR_tract	9231077	9231086	.	+	.	Parent=LTR_retrotransposon208
seq2	LTRharvest	long_terminal_repeat	9231088	9231377	.	+	.	Parent=LTR_retrotransposon208
seq2	LTRharvest	target_site_duplication	9231378	9231382	.	+	.	Parent=repeat_region208
###
seq2	LTRharvest	repeat_region	9243111	9251766	.	+	.	ID=repeat_region209
seq2	LTRharvest	target_site_duplication	9243111	9243114	.	+	.	Parent=repeat_region209
seq2	LTRharvest	LTR_retrotransposon	9243115	9251762	.	+	.	ID=LTR_retrotransposon209;Parent=repeat_region209;ltr_similarity=96.57;seq_number=2
seq2	LTRharvest	long_terminal_repeat	9243115	9243492	.	+	.	Parent=LTR_retrotransposon209
seq2	LTRdigest	RR_tract	9251384	9251397	.	+	.	Parent=LTR_retrotransposon209
seq2	LTRharvest	long_terminal_repeat	9251384	9251762	.	+	.	Parent=LTR_retrotransposon209
seq2	LTRharvest	target_site_duplication	9251763	9251766	.	+	.	Parent=repeat_region209
###
seq2	LTRharvest	repeat_region	9387848	9393280	.	+	.	ID=repeat_region210
seq2	LTRharvest	target_site_duplication	9387848	9387851	.	+	.	Parent=repeat_region210
seq2	LTRharvest	LTR_retrotransposon	9387852	9393276	.	+	.	ID=LTR_retrotransposon210;Parent=repeat_region210;ltr_similarity=92.38;seq_number=2
seq2	LTRharvest	long_terminal_repeat	9387852	9388061	.	+	.	Parent=LTR_retrotransposon210
seq2	LTRdigest	primer_binding_site	9388058	9388068	11	+	.	Parent=LTR_retrotransposon210;trna=Arabidopsis_thaliana_tRNA-Met-CAT-1-1 (chr1.trna166-MetCAT) chr1:25941164-25941235 (+) Met (CAT) 72 bp Sc: 66.0;trnaoffset=0;pbsoffset=4;edist=0
seq2	LTRdigest	protein_match	9388610	9388844	1.5e-09	+	.	Parent=LTR_retrotransposon210;reading_frame=2;name=Retrotrans_gag
seq2	LTRdigest	protein_match	9390363	9390690	3.7e-21	+	.	Parent=LTR_retrotransposon210;reading_frame=0;name=rve
seq2	LTRdigest	RR_tract	9393065	9393074	.	+	.	Parent=LTR_retrotransposon210
seq2	LTRharvest	long_terminal_repeat	9393070	9393276	.	+	.	Parent=LTR_retrotransposon210
seq2	LTRharvest	target_site_duplication	9393277	9393280	.	+	.	Parent=repeat_region210
###
seq2	LTRharvest	repeat_region	9404660	9410417	.	?	.	ID=repeat_region211
seq2	LTRharvest	target_site_duplication	9404660	9404663	.	?	.	Parent=repeat_region211
seq2	LTRharvest	LTR_retrotransposon	9404664	9410413	.	?	.	ID=LTR_retrotransposon211;Parent=repeat_region211;ltr_similarity=87.47;seq_number=2
seq2	LTRharvest	long_terminal_repeat	9404664	9405110	.	?	.	Parent=LTR_retrotransposon211
seq2	LTRharvest	long_terminal_repeat	9409967	9410413	.	?	.	Parent=LTR_retrotransposon211
seq2	LTRharvest	target_site_duplication	9410414	9410417	.	?	.	Parent=repeat_region211
###
seq2	LTRharvest	repeat_region	9604456	9613220	.	+	.	ID=repeat_region212
seq2	LTRharvest	target_site_duplication	9604456	9604459	.	+	.	Parent=repeat_region212
seq2	LTRharvest	LTR_retrotransposon	9604460	9613216	.	+	.	ID=LTR_retrotransposon212;Parent=repeat_region212;ltr_similarity=92.79;seq_number=2
seq2	LTRharvest	long_terminal_repeat	9604460	9605849	.	+	.	Parent=LTR_retrotransposon212
seq2	LTRdigest	RR_tract	9611806	9611821	.	+	.	Parent=LTR_retrotransposon212
seq2	LTRharvest	long_terminal_repeat	9611816	9613216	.	+	.	Parent=LTR_retrotransposon212
seq2	LTRharvest	target_site_duplication	9613217	9613220	.	+	.	Parent=repeat_region212
###
seq2	LTRharvest	repeat_region	9692207	9697536	.	-	.	ID=repeat_region213
seq2	LTRharvest	target_site_duplication	9692207	9692210	.	-	.	Parent=repeat_region213
seq2	LTRharvest	LTR_retrotransposon	9692211	9697532	.	-	.	ID=LTR_retrotransposon213;Parent=repeat_region213;ltr_similarity=94.91;seq_number=2
seq2	LTRharvest	long_terminal_repeat	9692211	9692735	.	-	.	Parent=LTR_retrotransposon213
seq2	LTRdigest	protein_match	9695107	9695452	1.1e-21	-	.	Parent=LTR_retrotransposon213;reading_frame=1;name=rve
seq2	LTRdigest	protein_match	9696475	9696712	2.1e-07	-	.	Parent=LTR_retrotransposon213;reading_frame=1;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	9697003	9697532	.	-	.	Parent=LTR_retrotransposon213
seq2	LTRharvest	target_site_duplication	9697533	9697536	.	-	.	Parent=repeat_region213
###
seq2	LTRharvest	repeat_region	10494349	10500974	.	-	.	ID=repeat_region214
seq2	LTRharvest	target_site_duplication	10494349	10494352	.	-	.	Parent=repeat_region214
seq2	LTRharvest	LTR_retrotransposon	10494353	10500970	.	-	.	ID=LTR_retrotransposon214;Parent=repeat_region214;ltr_similarity=98.11;seq_number=2
seq2	LTRharvest	long_terminal_repeat	10494353	10495030	.	-	.	Parent=LTR_retrotransposon214
seq2	LTRdigest	primer_binding_site	10500278	10500288	2.05	-	.	Parent=LTR_retrotransposon214;trna=Arabidopsis_thaliana_tRNA-Gln-CTG-2-1 (chr1.trna6-GlnCTG) chr1:892514-892585 (+) Gln (CTG) 72 bp Sc: 69.6;trnaoffset=5;pbsoffset=5;edist=1
seq2	LTRharvest	long_terminal_repeat	10500284	10500970	.	-	.	Parent=LTR_retrotransposon214
seq2	LTRharvest	target_site_duplication	10500971	10500974	.	-	.	Parent=repeat_region214
###
seq2	LTRharvest	repeat_region	10577154	10581829	.	-	.	ID=repeat_region215
seq2	LTRharvest	target_site_duplication	10577154	10577157	.	-	.	Parent=repeat_region215
seq2	LTRharvest	LTR_retrotransposon	10577158	10581825	.	-	.	ID=LTR_retrotransposon215;Parent=repeat_region215;ltr_similarity=99.32;seq_number=2
seq2	LTRharvest	long_terminal_repeat	10577158	10577450	.	-	.	Parent=LTR_retrotransposon215
seq2	LTRdigest	protein_match	10579655	10580009	1.6e-28	-	.	Parent=LTR_retrotransposon215;reading_frame=1;name=rve
seq2	LTRharvest	long_terminal_repeat	10581534	10581825	.	-	.	Parent=LTR_retrotransposon215
seq2	LTRharvest	target_site_duplication	10581826	10581829	.	-	.	Parent=repeat_region215
###
seq2	LTRharvest	repeat_region	10711156	10725827	.	+	.	ID=repeat_region216
seq2	LTRharvest	target_site_duplication	10711156	10711159	.	+	.	Parent=repeat_region216
seq2	LTRharvest	LTR_retrotransposon	10711160	10725823	.	+	.	ID=LTR_retrotransposon216;Parent=repeat_region216;ltr_similarity=77.00;seq_number=2
seq2	LTRharvest	long_terminal_repeat	10711160	10711372	.	+	.	Parent=LTR_retrotransposon216
seq2	LTRdigest	RR_tract	10725616	10725628	.	+	.	Parent=LTR_retrotransposon216
seq2	LTRharvest	long_terminal_repeat	10725620	10725823	.	+	.	Parent=LTR_retrotransposon216
seq2	LTRharvest	target_site_duplication	10725824	10725827	.	+	.	Parent=repeat_region216
###
seq2	LTRharvest	repeat_region	11016106	11020809	.	+	.	ID=repeat_region217
seq2	LTRharvest	target_site_duplication	11016106	11016110	.	+	.	Parent=repeat_region217
seq2	LTRharvest	LTR_retrotransposon	11016111	11020804	.	+	.	ID=LTR_retrotransposon217;Parent=repeat_region217;ltr_similarity=100.00;seq_number=2
seq2	LTRharvest	long_terminal_repeat	11016111	11016228	.	+	.	Parent=LTR_retrotransposon217
seq2	LTRdigest	protein_match	11016610	11016859	1.9e-08	+	.	Parent=LTR_retrotransposon217;reading_frame=1;name=Retrotrans_gag
seq2	LTRdigest	protein_match	11017885	11018221	5.9e-24	+	.	Parent=LTR_retrotransposon217;reading_frame=1;name=rve
seq2	LTRharvest	long_terminal_repeat	11020687	11020804	.	+	.	Parent=LTR_retrotransposon217
seq2	LTRharvest	target_site_duplication	11020805	11020809	.	+	.	Parent=repeat_region217
###
seq2	LTRharvest	repeat_region	11122703	11127679	.	-	.	ID=repeat_region218
seq2	LTRharvest	target_site_duplication	11122703	11122706	.	-	.	Parent=repeat_region218
seq2	LTRharvest	LTR_retrotransposon	11122707	11127675	.	-	.	ID=LTR_retrotransposon218;Parent=repeat_region218;ltr_similarity=99.29;seq_number=2
seq2	LTRharvest	long_terminal_repeat	11122707	11122846	.	-	.	Parent=LTR_retrotransposon218
seq2	LTRdigest	protein_match	11125338	11125614	2.3e-21	-	.	Parent=LTR_retrotransposon218;reading_frame=0;name=rve
seq2	LTRdigest	protein_match	11126837	11127083	4.6e-10	-	.	Parent=LTR_retrotransposon218;reading_frame=1;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	11127536	11127675	.	-	.	Parent=LTR_retrotransposon218
seq2	LTRharvest	target_site_duplication	11127676	11127679	.	-	.	Parent=repeat_region218
###
seq2	LTRharvest	repeat_region	11387797	11394406	.	+	.	ID=repeat_region219
seq2	LTRharvest	target_site_duplication	11387797	11387800	.	+	.	Parent=repeat_region219
seq2	LTRharvest	LTR_retrotransposon	11387801	11394402	.	+	.	ID=LTR_retrotransposon219;Parent=repeat_region219;ltr_similarity=91.51;seq_number=2
seq2	LTRharvest	long_terminal_repeat	11387801	11388221	.	+	.	Parent=LTR_retrotransposon219
seq2	LTRdigest	protein_match	11389771	11390140	9.2e-22	+	.	Parent=LTR_retrotransposon219;reading_frame=2;name=RVT_1
seq2	LTRdigest	protein_match	11391302	11391629	7.9e-10	+	.	Parent=LTR_retrotransposon219;reading_frame=0;name=rve
seq2	LTRharvest	long_terminal_repeat	11393979	11394402	.	+	.	Parent=LTR_retrotransposon219
seq2	LTRharvest	target_site_duplication	11394403	11394406	.	+	.	Parent=repeat_region219
###
seq2	LTRharvest	repeat_region	11652692	11657748	.	+	.	ID=repeat_region220
seq2	LTRharvest	target_site_duplication	11652692	11652696	.	+	.	Parent=repeat_region220
seq2	LTRharvest	LTR_retrotransposon	11652697	11657743	.	+	.	ID=LTR_retrotransposon220;Parent=repeat_region220;ltr_similarity=100.00;seq_number=2
seq2	LTRharvest	long_terminal_repeat	11652697	11652950	.	+	.	Parent=LTR_retrotransposon220
seq2	LTRdigest	protein_match	11653294	11653591	1.1e-10	+	.	Parent=LTR_retrotransposon220;reading_frame=0;name=Retrotrans_gag
seq2	LTRdigest	protein_match	11654698	11655034	3e-22	+	.	Parent=LTR_retrotransposon220;reading_frame=0;name=rve
seq2	LTRdigest	RR_tract	11657481	11657489	.	+	.	Parent=LTR_retrotransposon220
seq2	LTRharvest	long_terminal_repeat	11657490	11657743	.	+	.	Parent=LTR_retrotransposon220
seq2	LTRharvest	target_site_duplication	11657744	11657748	.	+	.	Parent=repeat_region220
###
seq2	LTRharvest	repeat_region	11664964	11669792	.	+	.	ID=repeat_region221
seq2	LTRharvest	target_site_duplication	11664964	11664968	.	+	.	Parent=repeat_region221
seq2	LTRharvest	LTR_retrotransposon	11664969	11669787	.	+	.	ID=LTR_retrotransposon221;Parent=repeat_region221;ltr_similarity=100.00;seq_number=2
seq2	LTRharvest	long_terminal_repeat	11664969	11665342	.	+	.	Parent=LTR_retrotransposon221
seq2	LTRdigest	protein_match	11666895	11667243	8.6e-29	+	.	Parent=LTR_retrotransposon221;reading_frame=0;name=rve
seq2	LTRdigest	RR_tract	11669405	11669413	.	+	.	Parent=LTR_retrotransposon221
seq2	LTRharvest	long_terminal_repeat	11669414	11669787	.	+	.	Parent=LTR_retrotransposon221
seq2	LTRharvest	target_site_duplication	11669788	11669792	.	+	.	Parent=repeat_region221
###
seq2	LTRharvest	repeat_region	11853467	11859853	.	+	.	ID=repeat_region222
seq2	LTRharvest	target_site_duplication	11853467	11853470	.	+	.	Parent=repeat_region222
seq2	LTRharvest	LTR_retrotransposon	11853471	11859849	.	+	.	ID=LTR_retrotransposon222;Parent=repeat_region222;ltr_similarity=70.68;seq_number=2
seq2	LTRharvest	long_terminal_repeat	11853471	11853603	.	+	.	Parent=LTR_retrotransposon222
seq2	LTRdigest	protein_match	11854890	11855115	7.9e-12	+	.	Parent=LTR_retrotransposon222;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	11859717	11859849	.	+	.	Parent=LTR_retrotransposon222
seq2	LTRharvest	target_site_duplication	11859850	11859853	.	+	.	Parent=repeat_region222
###
seq2	LTRharvest	repeat_region	12056077	12071271	.	-	.	ID=repeat_region223
seq2	LTRharvest	target_site_duplication	12056077	12056080	.	-	.	Parent=repeat_region223
seq2	LTRharvest	LTR_retrotransposon	12056081	12071267	.	-	.	ID=LTR_retrotransposon223;Parent=repeat_region223;ltr_similarity=80.00;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12056081	12056255	.	-	.	Parent=LTR_retrotransposon223
seq2	LTRdigest	protein_match	12069115	12069391	1.9e-18	-	.	Parent=LTR_retrotransposon223;reading_frame=1;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	12071108	12071267	.	-	.	Parent=LTR_retrotransposon223
seq2	LTRharvest	target_site_duplication	12071268	12071271	.	-	.	Parent=repeat_region223
###
seq2	LTRharvest	repeat_region	12275504	12287364	.	-	.	ID=repeat_region224
seq2	LTRharvest	target_site_duplication	12275504	12275507	.	-	.	Parent=repeat_region224
seq2	LTRharvest	LTR_retrotransposon	12275508	12287360	.	-	.	ID=LTR_retrotransposon224;Parent=repeat_region224;ltr_similarity=87.50;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12275508	12275610	.	-	.	Parent=LTR_retrotransposon224
seq2	LTRdigest	protein_match	12286655	12286859	2.5e-06	-	.	Parent=LTR_retrotransposon224;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	12287257	12287360	.	-	.	Parent=LTR_retrotransposon224
seq2	LTRharvest	target_site_duplication	12287361	12287364	.	-	.	Parent=repeat_region224
###
seq2	LTRharvest	repeat_region	12303473	12308750	.	-	.	ID=repeat_region225
seq2	LTRharvest	target_site_duplication	12303473	12303476	.	-	.	Parent=repeat_region225
seq2	LTRharvest	LTR_retrotransposon	12303477	12308746	.	-	.	ID=LTR_retrotransposon225;Parent=repeat_region225;ltr_similarity=91.37;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12303477	12303673	.	-	.	Parent=LTR_retrotransposon225
seq2	LTRdigest	RR_tract	12303685	12303694	.	-	.	Parent=LTR_retrotransposon225
seq2	LTRharvest	long_terminal_repeat	12308552	12308746	.	-	.	Parent=LTR_retrotransposon225
seq2	LTRharvest	target_site_duplication	12308747	12308750	.	-	.	Parent=repeat_region225
###
seq2	LTRharvest	repeat_region	12314643	12319074	.	-	.	ID=repeat_region226
seq2	LTRharvest	target_site_duplication	12314643	12314646	.	-	.	Parent=repeat_region226
seq2	LTRharvest	LTR_retrotransposon	12314647	12319070	.	-	.	ID=LTR_retrotransposon226;Parent=repeat_region226;ltr_similarity=85.90;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12314647	12314861	.	-	.	Parent=LTR_retrotransposon226
seq2	LTRdigest	RR_tract	12314869	12314877	.	-	.	Parent=LTR_retrotransposon226
seq2	LTRharvest	long_terminal_repeat	12318844	12319070	.	-	.	Parent=LTR_retrotransposon226
seq2	LTRharvest	target_site_duplication	12319071	12319074	.	-	.	Parent=repeat_region226
###
seq2	LTRharvest	repeat_region	12478082	12486331	.	+	.	ID=repeat_region227
seq2	LTRharvest	target_site_duplication	12478082	12478085	.	+	.	Parent=repeat_region227
seq2	LTRharvest	LTR_retrotransposon	12478086	12486327	.	+	.	ID=LTR_retrotransposon227;Parent=repeat_region227;ltr_similarity=96.83;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12478086	12479253	.	+	.	Parent=LTR_retrotransposon227
seq2	LTRdigest	protein_match	12480009	12480297	2.1e-28	+	.	Parent=LTR_retrotransposon227;reading_frame=0;name=Retrotrans_gag
seq2	LTRdigest	protein_match	12481609	12482089	1.6e-30	+	.	Parent=LTR_retrotransposon227;reading_frame=1;name=RVT_1
seq2	LTRdigest	protein_match	12483202	12483529	1.5e-14	+	.	Parent=LTR_retrotransposon227;reading_frame=1;name=rve
seq2	LTRdigest	RR_tract	12485161	12485169	.	+	.	Parent=LTR_retrotransposon227
seq2	LTRharvest	long_terminal_repeat	12485171	12486327	.	+	.	Parent=LTR_retrotransposon227
seq2	LTRharvest	target_site_duplication	12486328	12486331	.	+	.	Parent=repeat_region227
###
seq2	LTRharvest	repeat_region	12491753	12502110	.	-	.	ID=repeat_region228
seq2	LTRharvest	target_site_duplication	12491753	12491756	.	-	.	Parent=repeat_region228
seq2	LTRharvest	LTR_retrotransposon	12491757	12502106	.	-	.	ID=LTR_retrotransposon228;Parent=repeat_region228;ltr_similarity=94.04;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12491757	12492226	.	-	.	Parent=LTR_retrotransposon228
seq2	LTRdigest	protein_match	12497140	12497368	8.4e-07	-	.	Parent=LTR_retrotransposon228;reading_frame=1;name=rve
seq2	LTRdigest	protein_match	12498171	12498402	1.6e-05	-	.	Parent=LTR_retrotransposon228;reading_frame=2;name=RNase_H
seq2	LTRdigest	protein_match	12499104	12499416	1.7e-17	-	.	Parent=LTR_retrotransposon228;reading_frame=2;name=RVT_1
seq2	LTRdigest	protein_match	12500439	12500688	1.6e-14	-	.	Parent=LTR_retrotransposon228;reading_frame=2;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	12501642	12502106	.	-	.	Parent=LTR_retrotransposon228
seq2	LTRharvest	target_site_duplication	12502107	12502110	.	-	.	Parent=repeat_region228
###
seq2	LTRharvest	repeat_region	12502660	12508401	.	+	.	ID=repeat_region229
seq2	LTRharvest	target_site_duplication	12502660	12502663	.	+	.	Parent=repeat_region229
seq2	LTRharvest	LTR_retrotransposon	12502664	12508397	.	+	.	ID=LTR_retrotransposon229;Parent=repeat_region229;ltr_similarity=91.76;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12502664	12502930	.	+	.	Parent=LTR_retrotransposon229
seq2	LTRdigest	protein_match	12506421	12506898	3e-26	+	.	Parent=LTR_retrotransposon229;reading_frame=1;name=RVT_1
seq2	LTRharvest	long_terminal_repeat	12508135	12508397	.	+	.	Parent=LTR_retrotransposon229
seq2	LTRharvest	target_site_duplication	12508398	12508401	.	+	.	Parent=repeat_region229
###
seq2	LTRharvest	repeat_region	12549505	12555923	.	-	.	ID=repeat_region230
seq2	LTRharvest	target_site_duplication	12549505	12549508	.	-	.	Parent=repeat_region230
seq2	LTRharvest	LTR_retrotransposon	12549509	12555919	.	-	.	ID=LTR_retrotransposon230;Parent=repeat_region230;ltr_similarity=98.44;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12549509	12550408	.	-	.	Parent=LTR_retrotransposon230
seq2	LTRdigest	protein_match	12551068	12551293	8.1e-10	-	.	Parent=LTR_retrotransposon230;reading_frame=0;name=rve
seq2	LTRdigest	protein_match	12552312	12552585	1.6e-23	-	.	Parent=LTR_retrotransposon230;reading_frame=1;name=RVT_1
seq2	LTRdigest	protein_match	12552572	12552791	3.6e-14	-	.	Parent=LTR_retrotransposon230;reading_frame=2;name=RVT_1
seq2	LTRdigest	protein_match	12554054	12554354	7.3e-25	-	.	Parent=LTR_retrotransposon230;reading_frame=2;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	12555024	12555919	.	-	.	Parent=LTR_retrotransposon230
seq2	LTRharvest	target_site_duplication	12555920	12555923	.	-	.	Parent=repeat_region230
###
seq2	LTRharvest	repeat_region	12613325	12620947	.	-	.	ID=repeat_region231
seq2	LTRharvest	target_site_duplication	12613325	12613330	.	-	.	Parent=repeat_region231
seq2	LTRharvest	LTR_retrotransposon	12613331	12620941	.	-	.	ID=LTR_retrotransposon231;Parent=repeat_region231;ltr_similarity=98.84;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12613331	12614366	.	-	.	Parent=LTR_retrotransposon231
seq2	LTRdigest	protein_match	12616008	12616323	4.6e-16	-	.	Parent=LTR_retrotransposon231;reading_frame=1;name=rve
seq2	LTRdigest	protein_match	12617447	12617927	1.6e-33	-	.	Parent=LTR_retrotransposon231;reading_frame=2;name=RVT_1
seq2	LTRdigest	protein_match	12618842	12619091	2.7e-19	-	.	Parent=LTR_retrotransposon231;reading_frame=2;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	12619912	12620941	.	-	.	Parent=LTR_retrotransposon231
seq2	LTRharvest	target_site_duplication	12620942	12620947	.	-	.	Parent=repeat_region231
###
seq2	LTRharvest	repeat_region	12636496	12644006	.	-	.	ID=repeat_region232
seq2	LTRharvest	target_site_duplication	12636496	12636499	.	-	.	Parent=repeat_region232
seq2	LTRharvest	LTR_retrotransposon	12636500	12644002	.	-	.	ID=LTR_retrotransposon232;Parent=repeat_region232;ltr_similarity=83.78;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12636500	12636875	.	-	.	Parent=LTR_retrotransposon232
seq2	LTRdigest	RR_tract	12636897	12636904	.	-	.	Parent=LTR_retrotransposon232
seq2	LTRharvest	long_terminal_repeat	12643636	12644002	.	-	.	Parent=LTR_retrotransposon232
seq2	LTRharvest	target_site_duplication	12644003	12644006	.	-	.	Parent=repeat_region232
###
seq2	LTRharvest	repeat_region	12674270	12684177	.	-	.	ID=repeat_region233
seq2	LTRharvest	target_site_duplication	12674270	12674273	.	-	.	Parent=repeat_region233
seq2	LTRharvest	LTR_retrotransposon	12674274	12684173	.	-	.	ID=LTR_retrotransposon233;Parent=repeat_region233;ltr_similarity=83.19;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12674274	12674386	.	-	.	Parent=LTR_retrotransposon233
seq2	LTRdigest	protein_match	12680037	12680358	1.5e-11	-	.	Parent=LTR_retrotransposon233;reading_frame=2;name=rve
seq2	LTRharvest	long_terminal_repeat	12684061	12684173	.	-	.	Parent=LTR_retrotransposon233
seq2	LTRharvest	target_site_duplication	12684174	12684177	.	-	.	Parent=repeat_region233
###
seq2	LTRharvest	repeat_region	12695924	12704547	.	+	.	ID=repeat_region234
seq2	LTRharvest	target_site_duplication	12695924	12695927	.	+	.	Parent=repeat_region234
seq2	LTRharvest	LTR_retrotransposon	12695928	12704543	.	+	.	ID=LTR_retrotransposon234;Parent=repeat_region234;ltr_similarity=96.10;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12695928	12697878	.	+	.	Parent=LTR_retrotransposon234
seq2	LTRdigest	protein_match	12698490	12698769	1.1e-23	+	.	Parent=LTR_retrotransposon234;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	12702606	12704543	.	+	.	Parent=LTR_retrotransposon234
seq2	LTRharvest	target_site_duplication	12704544	12704547	.	+	.	Parent=repeat_region234
###
seq2	LTRharvest	repeat_region	12960385	12968472	.	-	.	ID=repeat_region235
seq2	LTRharvest	target_site_duplication	12960385	12960388	.	-	.	Parent=repeat_region235
seq2	LTRharvest	LTR_retrotransposon	12960389	12968468	.	-	.	ID=LTR_retrotransposon235;Parent=repeat_region235;ltr_similarity=95.00;seq_number=2
seq2	LTRharvest	long_terminal_repeat	12960389	12961529	.	-	.	Parent=LTR_retrotransposon235
seq2	LTRdigest	protein_match	12963222	12963549	2e-16	-	.	Parent=LTR_retrotransposon235;reading_frame=2;name=rve
seq2	LTRdigest	protein_match	12964753	12965119	1.2e-15	-	.	Parent=LTR_retrotransposon235;reading_frame=1;name=RVT_1
seq2	LTRdigest	protein_match	12966203	12966491	3.5e-29	-	.	Parent=LTR_retrotransposon235;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	12967339	12968468	.	-	.	Parent=LTR_retrotransposon235
seq2	LTRharvest	target_site_duplication	12968469	12968472	.	-	.	Parent=repeat_region235
###
seq2	LTRharvest	repeat_region	13087346	13092794	.	-	.	ID=repeat_region236
seq2	LTRharvest	target_site_duplication	13087346	13087349	.	-	.	Parent=repeat_region236
seq2	LTRharvest	LTR_retrotransposon	13087350	13092790	.	-	.	ID=LTR_retrotransposon236;Parent=repeat_region236;ltr_similarity=96.17;seq_number=2
seq2	LTRharvest	long_terminal_repeat	13087350	13088106	.	-	.	Parent=LTR_retrotransposon236
seq2	LTRdigest	protein_match	13088157	13088634	2.5e-28	-	.	Parent=LTR_retrotransposon236;reading_frame=1;name=RVT_1
seq2	LTRdigest	protein_match	13090933	13091203	4.2e-16	-	.	Parent=LTR_retrotransposon236;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	13092042	13092790	.	-	.	Parent=LTR_retrotransposon236
seq2	LTRharvest	target_site_duplication	13092791	13092794	.	-	.	Parent=repeat_region236
###
seq2	LTRharvest	repeat_region	13096159	13112101	.	+	.	ID=repeat_region237
seq2	LTRharvest	target_site_duplication	13096159	13096162	.	+	.	Parent=repeat_region237
seq2	LTRharvest	LTR_retrotransposon	13096163	13112097	.	+	.	ID=LTR_retrotransposon237;Parent=repeat_region237;ltr_similarity=86.79;seq_number=2
seq2	LTRharvest	long_terminal_repeat	13096163	13096903	.	+	.	Parent=LTR_retrotransposon237
seq2	LTRdigest	protein_match	13101327	13102098	0	+	.	Parent=LTR_retrotransposon237;reading_frame=1;name=RVT_1
seq2	LTRdigest	protein_match	13106545	13106884	1.7e-22	+	.	Parent=LTR_retrotransposon237;reading_frame=2;name=rve
seq2	LTRharvest	long_terminal_repeat	13111356	13112097	.	+	.	Parent=LTR_retrotransposon237
seq2	LTRharvest	target_site_duplication	13112098	13112101	.	+	.	Parent=repeat_region237
###
seq2	LTRharvest	repeat_region	13318006	13323177	.	-	.	ID=repeat_region238
seq2	LTRharvest	target_site_duplication	13318006	13318009	.	-	.	Parent=repeat_region238
seq2	LTRharvest	LTR_retrotransposon	13318010	13323173	.	-	.	ID=LTR_retrotransposon238;Parent=repeat_region238;ltr_similarity=90.88;seq_number=2
seq2	LTRharvest	long_terminal_repeat	13318010	13318269	.	-	.	Parent=LTR_retrotransposon238
seq2	LTRdigest	protein_match	13319103	13319379	1.2e-10	-	.	Parent=LTR_retrotransposon238;reading_frame=2;name=rve
seq2	LTRdigest	protein_match	13320441	13320918	7.5e-34	-	.	Parent=LTR_retrotransposon238;reading_frame=2;name=RVT_1
seq2	LTRdigest	protein_match	13322133	13322409	4.9e-10	-	.	Parent=LTR_retrotransposon238;reading_frame=2;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	13322900	13323173	.	-	.	Parent=LTR_retrotransposon238
seq2	LTRharvest	target_site_duplication	13323174	13323177	.	-	.	Parent=repeat_region238
###
seq2	LTRharvest	repeat_region	13334608	13342570	.	?	.	ID=repeat_region239
seq2	LTRharvest	target_site_duplication	13334608	13334611	.	?	.	Parent=repeat_region239
seq2	LTRharvest	LTR_retrotransposon	13334612	13342566	.	?	.	ID=LTR_retrotransposon239;Parent=repeat_region239;ltr_similarity=80.41;seq_number=2
seq2	LTRharvest	long_terminal_repeat	13334612	13334745	.	?	.	Parent=LTR_retrotransposon239
seq2	LTRharvest	long_terminal_repeat	13342419	13342566	.	?	.	Parent=LTR_retrotransposon239
seq2	LTRharvest	target_site_duplication	13342567	13342570	.	?	.	Parent=repeat_region239
###
seq2	LTRharvest	repeat_region	13360104	13368314	.	-	.	ID=repeat_region240
seq2	LTRharvest	target_site_duplication	13360104	13360108	.	-	.	Parent=repeat_region240
seq2	LTRharvest	LTR_retrotransposon	13360109	13368309	.	-	.	ID=LTR_retrotransposon240;Parent=repeat_region240;ltr_similarity=96.05;seq_number=2
seq2	LTRharvest	long_terminal_repeat	13360109	13360639	.	-	.	Parent=LTR_retrotransposon240
seq2	LTRdigest	protein_match	13364684	13365023	6.1e-29	-	.	Parent=LTR_retrotransposon240;reading_frame=1;name=rve
seq2	LTRharvest	long_terminal_repeat	13367779	13368309	.	-	.	Parent=LTR_retrotransposon240
seq2	LTRharvest	target_site_duplication	13368310	13368314	.	-	.	Parent=repeat_region240
###
seq2	LTRharvest	repeat_region	13369169	13374112	.	+	.	ID=repeat_region241
seq2	LTRharvest	target_site_duplication	13369169	13369173	.	+	.	Parent=repeat_region241
seq2	LTRharvest	LTR_retrotransposon	13369174	13374107	.	+	.	ID=LTR_retrotransposon241;Parent=repeat_region241;ltr_similarity=98.41;seq_number=2
seq2	LTRharvest	long_terminal_repeat	13369174	13369613	.	+	.	Parent=LTR_retrotransposon241
seq2	LTRdigest	protein_match	13371193	13371331	2.8e-07	+	.	Parent=LTR_retrotransposon241;reading_frame=0;name=rve
seq2	LTRdigest	protein_match	13371439	13371547	5e-09	+	.	Parent=LTR_retrotransposon241;reading_frame=0;name=rve
seq2	LTRdigest	RR_tract	13373658	13373666	.	+	.	Parent=LTR_retrotransposon241
seq2	LTRharvest	long_terminal_repeat	13373667	13374107	.	+	.	Parent=LTR_retrotransposon241
seq2	LTRharvest	target_site_duplication	13374108	13374112	.	+	.	Parent=repeat_region241
###
seq2	LTRharvest	repeat_region	13440032	13449246	.	-	.	ID=repeat_region242
seq2	LTRharvest	target_site_duplication	13440032	13440035	.	-	.	Parent=repeat_region242
seq2	LTRharvest	LTR_retrotransposon	13440036	13449242	.	-	.	ID=LTR_retrotransposon242;Parent=repeat_region242;ltr_similarity=94.06;seq_number=2
seq2	LTRharvest	long_terminal_repeat	13440036	13440506	.	-	.	Parent=LTR_retrotransposon242
seq2	LTRdigest	protein_match	13443147	13443480	1.1e-12	-	.	Parent=LTR_retrotransposon242;reading_frame=2;name=rve
seq2	LTRdigest	protein_match	13444229	13444469	3.4e-06	-	.	Parent=LTR_retrotransposon242;reading_frame=0;name=RNase_H
seq2	LTRdigest	protein_match	13445143	13445401	4.1e-17	-	.	Parent=LTR_retrotransposon242;reading_frame=1;name=RVT_1
seq2	LTRdigest	protein_match	13445407	13445620	1.9e-06	-	.	Parent=LTR_retrotransposon242;reading_frame=1;name=RVT_1
seq2	LTRdigest	protein_match	13447273	13447549	7.6e-17	-	.	Parent=LTR_retrotransposon242;reading_frame=1;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	13448785	13449242	.	-	.	Parent=LTR_retrotransposon242
seq2	LTRharvest	target_site_duplication	13449243	13449246	.	-	.	Parent=repeat_region242
###
seq2	LTRharvest	repeat_region	14073142	14081968	.	-	.	ID=repeat_region243
seq2	LTRharvest	target_site_duplication	14073142	14073145	.	-	.	Parent=repeat_region243
seq2	LTRharvest	LTR_retrotransposon	14073146	14081964	.	-	.	ID=LTR_retrotransposon243;Parent=repeat_region243;ltr_similarity=96.27;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14073146	14074779	.	-	.	Parent=LTR_retrotransposon243
seq2	LTRdigest	protein_match	14079503	14079782	2.1e-24	-	.	Parent=LTR_retrotransposon243;reading_frame=1;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	14080334	14081964	.	-	.	Parent=LTR_retrotransposon243
seq2	LTRharvest	target_site_duplication	14081965	14081968	.	-	.	Parent=repeat_region243
###
seq2	LTRharvest	repeat_region	14117872	14141565	.	+	.	ID=repeat_region244
seq2	LTRharvest	target_site_duplication	14117872	14117875	.	+	.	Parent=repeat_region244
seq2	LTRharvest	LTR_retrotransposon	14117876	14141561	.	+	.	ID=LTR_retrotransposon244;Parent=repeat_region244;ltr_similarity=99.12;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14117876	14119466	.	+	.	Parent=LTR_retrotransposon244
seq2	LTRdigest	protein_match	14131111	14131390	1.4e-23	+	.	Parent=LTR_retrotransposon244;reading_frame=2;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	14139972	14141561	.	+	.	Parent=LTR_retrotransposon244
seq2	LTRharvest	target_site_duplication	14141562	14141565	.	+	.	Parent=repeat_region244
###
seq2	LTRharvest	repeat_region	14272815	14285588	.	?	.	ID=repeat_region245
seq2	LTRharvest	target_site_duplication	14272815	14272823	.	?	.	Parent=repeat_region245
seq2	LTRharvest	LTR_retrotransposon	14272824	14285579	.	?	.	ID=LTR_retrotransposon245;Parent=repeat_region245;ltr_similarity=84.29;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14272824	14272963	.	?	.	Parent=LTR_retrotransposon245
seq2	LTRharvest	long_terminal_repeat	14285443	14285579	.	?	.	Parent=LTR_retrotransposon245
seq2	LTRharvest	target_site_duplication	14285580	14285588	.	?	.	Parent=repeat_region245
###
seq2	LTRharvest	repeat_region	14329870	14334140	.	+	.	ID=repeat_region246
seq2	LTRharvest	target_site_duplication	14329870	14329873	.	+	.	Parent=repeat_region246
seq2	LTRharvest	LTR_retrotransposon	14329874	14334136	.	+	.	ID=LTR_retrotransposon246;Parent=repeat_region246;ltr_similarity=90.40;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14329874	14329998	.	+	.	Parent=LTR_retrotransposon246
seq2	LTRdigest	protein_match	14331582	14331720	3.9e-05	+	.	Parent=LTR_retrotransposon246;reading_frame=1;name=rve
seq2	LTRdigest	protein_match	14331746	14331917	1.4e-11	+	.	Parent=LTR_retrotransposon246;reading_frame=0;name=rve
seq2	LTRharvest	long_terminal_repeat	14334016	14334136	.	+	.	Parent=LTR_retrotransposon246
seq2	LTRharvest	target_site_duplication	14334137	14334140	.	+	.	Parent=repeat_region246
###
seq2	LTRharvest	repeat_region	14504085	14511693	.	-	.	ID=repeat_region247
seq2	LTRharvest	target_site_duplication	14504085	14504088	.	-	.	Parent=repeat_region247
seq2	LTRharvest	LTR_retrotransposon	14504089	14511689	.	-	.	ID=LTR_retrotransposon247;Parent=repeat_region247;ltr_similarity=77.52;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14504089	14504217	.	-	.	Parent=LTR_retrotransposon247
seq2	LTRdigest	protein_match	14505371	14505854	3.1e-33	-	.	Parent=LTR_retrotransposon247;reading_frame=0;name=RVT_1
seq2	LTRdigest	protein_match	14507298	14507571	1.7e-23	-	.	Parent=LTR_retrotransposon247;reading_frame=2;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	14511568	14511689	.	-	.	Parent=LTR_retrotransposon247
seq2	LTRharvest	target_site_duplication	14511690	14511693	.	-	.	Parent=repeat_region247
###
seq2	LTRharvest	repeat_region	14579218	14584093	.	+	.	ID=repeat_region248
seq2	LTRharvest	target_site_duplication	14579218	14579221	.	+	.	Parent=repeat_region248
seq2	LTRharvest	LTR_retrotransposon	14579222	14584089	.	+	.	ID=LTR_retrotransposon248;Parent=repeat_region248;ltr_similarity=93.91;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14579222	14579707	.	+	.	Parent=LTR_retrotransposon248
seq2	LTRdigest	RR_tract	14583566	14583576	.	+	.	Parent=LTR_retrotransposon248
seq2	LTRharvest	long_terminal_repeat	14583597	14584089	.	+	.	Parent=LTR_retrotransposon248
seq2	LTRharvest	target_site_duplication	14584090	14584093	.	+	.	Parent=repeat_region248
###
seq2	LTRharvest	repeat_region	14608924	14615364	.	-	.	ID=repeat_region249
seq2	LTRharvest	target_site_duplication	14608924	14608927	.	-	.	Parent=repeat_region249
seq2	LTRharvest	LTR_retrotransposon	14608928	14615360	.	-	.	ID=LTR_retrotransposon249;Parent=repeat_region249;ltr_similarity=78.23;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14608928	14609051	.	-	.	Parent=LTR_retrotransposon249
seq2	LTRdigest	protein_match	14612518	14612611	1.4e-05	-	.	Parent=LTR_retrotransposon249;reading_frame=1;name=rve
seq2	LTRdigest	protein_match	14612606	14612858	7.4e-12	-	.	Parent=LTR_retrotransposon249;reading_frame=0;name=rve
seq2	LTRharvest	long_terminal_repeat	14615245	14615360	.	-	.	Parent=LTR_retrotransposon249
seq2	LTRharvest	target_site_duplication	14615361	14615364	.	-	.	Parent=repeat_region249
###
seq2	LTRharvest	repeat_region	14616103	14623213	.	+	.	ID=repeat_region250
seq2	LTRharvest	target_site_duplication	14616103	14616106	.	+	.	Parent=repeat_region250
seq2	LTRharvest	LTR_retrotransposon	14616107	14623209	.	+	.	ID=LTR_retrotransposon250;Parent=repeat_region250;ltr_similarity=96.43;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14616107	14616832	.	+	.	Parent=LTR_retrotransposon250
seq2	LTRdigest	RR_tract	14622471	14622483	.	+	.	Parent=LTR_retrotransposon250
seq2	LTRharvest	long_terminal_repeat	14622481	14623209	.	+	.	Parent=LTR_retrotransposon250
seq2	LTRharvest	target_site_duplication	14623210	14623213	.	+	.	Parent=repeat_region250
###
seq2	LTRharvest	repeat_region	14671136	14675861	.	+	.	ID=repeat_region251
seq2	LTRharvest	target_site_duplication	14671136	14671140	.	+	.	Parent=repeat_region251
seq2	LTRharvest	LTR_retrotransposon	14671141	14675856	.	+	.	ID=LTR_retrotransposon251;Parent=repeat_region251;ltr_similarity=97.92;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14671141	14671429	.	+	.	Parent=LTR_retrotransposon251
seq2	LTRdigest	protein_match	14673006	14673345	1.6e-22	+	.	Parent=LTR_retrotransposon251;reading_frame=2;name=rve
seq2	LTRharvest	long_terminal_repeat	14675568	14675856	.	+	.	Parent=LTR_retrotransposon251
seq2	LTRharvest	target_site_duplication	14675857	14675861	.	+	.	Parent=repeat_region251
###
seq2	LTRharvest	repeat_region	14729375	14734613	.	-	.	ID=repeat_region252
seq2	LTRharvest	target_site_duplication	14729375	14729380	.	-	.	Parent=repeat_region252
seq2	LTRharvest	LTR_retrotransposon	14729381	14734607	.	-	.	ID=LTR_retrotransposon252;Parent=repeat_region252;ltr_similarity=92.13;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14729381	14729774	.	-	.	Parent=LTR_retrotransposon252
seq2	LTRdigest	protein_match	14730326	14730671	2.1e-14	-	.	Parent=LTR_retrotransposon252;reading_frame=0;name=rve
seq2	LTRdigest	protein_match	14731745	14732054	1.8e-21	-	.	Parent=LTR_retrotransposon252;reading_frame=0;name=RVT_1
seq2	LTRdigest	protein_match	14733455	14733686	7.3e-07	-	.	Parent=LTR_retrotransposon252;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	14734215	14734607	.	-	.	Parent=LTR_retrotransposon252
seq2	LTRharvest	target_site_duplication	14734608	14734613	.	-	.	Parent=repeat_region252
###
seq2	LTRharvest	repeat_region	14762486	14785734	.	?	.	ID=repeat_region253
seq2	LTRharvest	target_site_duplication	14762486	14762489	.	?	.	Parent=repeat_region253
seq2	LTRharvest	LTR_retrotransposon	14762490	14785730	.	?	.	ID=LTR_retrotransposon253;Parent=repeat_region253;ltr_similarity=88.46;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14762490	14762671	.	?	.	Parent=LTR_retrotransposon253
seq2	LTRharvest	long_terminal_repeat	14785550	14785730	.	?	.	Parent=LTR_retrotransposon253
seq2	LTRharvest	target_site_duplication	14785731	14785734	.	?	.	Parent=repeat_region253
###
seq2	LTRharvest	repeat_region	14860986	14866195	.	+	.	ID=repeat_region254
seq2	LTRharvest	target_site_duplication	14860986	14860989	.	+	.	Parent=repeat_region254
seq2	LTRharvest	LTR_retrotransposon	14860990	14866191	.	+	.	ID=LTR_retrotransposon254;Parent=repeat_region254;ltr_similarity=90.66;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14860990	14861246	.	+	.	Parent=LTR_retrotransposon254
seq2	LTRdigest	protein_match	14862888	14863227	7.5e-23	+	.	Parent=LTR_retrotransposon254;reading_frame=2;name=rve
seq2	LTRdigest	protein_match	14864199	14864541	4.9e-06	+	.	Parent=LTR_retrotransposon254;reading_frame=2;name=RVT_1
seq2	LTRharvest	long_terminal_repeat	14865941	14866191	.	+	.	Parent=LTR_retrotransposon254
seq2	LTRharvest	target_site_duplication	14866192	14866195	.	+	.	Parent=repeat_region254
###
seq2	LTRharvest	repeat_region	14890951	14900042	.	?	.	ID=repeat_region255
seq2	LTRharvest	target_site_duplication	14890951	14890954	.	?	.	Parent=repeat_region255
seq2	LTRharvest	LTR_retrotransposon	14890955	14900038	.	?	.	ID=LTR_retrotransposon255;Parent=repeat_region255;ltr_similarity=88.10;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14890955	14891164	.	?	.	Parent=LTR_retrotransposon255
seq2	LTRharvest	long_terminal_repeat	14899837	14900038	.	?	.	Parent=LTR_retrotransposon255
seq2	LTRharvest	target_site_duplication	14900039	14900042	.	?	.	Parent=repeat_region255
###
seq2	LTRharvest	repeat_region	14956982	14962258	.	-	.	ID=repeat_region256
seq2	LTRharvest	target_site_duplication	14956982	14956985	.	-	.	Parent=repeat_region256
seq2	LTRharvest	LTR_retrotransposon	14956986	14962254	.	-	.	ID=LTR_retrotransposon256;Parent=repeat_region256;ltr_similarity=97.59;seq_number=2
seq2	LTRharvest	long_terminal_repeat	14956986	14957276	.	-	.	Parent=LTR_retrotransposon256
seq2	LTRdigest	RR_tract	14957279	14957287	.	-	.	Parent=LTR_retrotransposon256
seq2	LTRharvest	long_terminal_repeat	14961970	14962254	.	-	.	Parent=LTR_retrotransposon256
seq2	LTRharvest	target_site_duplication	14962255	14962258	.	-	.	Parent=repeat_region256
###
seq2	LTRharvest	repeat_region	15540525	15549184	.	+	.	ID=repeat_region257
seq2	LTRharvest	target_site_duplication	15540525	15540528	.	+	.	Parent=repeat_region257
seq2	LTRharvest	LTR_retrotransposon	15540529	15549180	.	+	.	ID=LTR_retrotransposon257;Parent=repeat_region257;ltr_similarity=97.01;seq_number=2
seq2	LTRharvest	long_terminal_repeat	15540529	15541024	.	+	.	Parent=LTR_retrotransposon257
seq2	LTRdigest	protein_match	15543436	15543778	1.2e-26	+	.	Parent=LTR_retrotransposon257;reading_frame=0;name=rve
seq2	LTRdigest	RR_tract	15548663	15548679	.	+	.	Parent=LTR_retrotransposon257
seq2	LTRharvest	long_terminal_repeat	15548679	15549180	.	+	.	Parent=LTR_retrotransposon257
seq2	LTRharvest	target_site_duplication	15549181	15549184	.	+	.	Parent=repeat_region257
###
seq2	LTRharvest	repeat_region	15591665	15600826	.	+	.	ID=repeat_region258
seq2	LTRharvest	target_site_duplication	15591665	15591668	.	+	.	Parent=repeat_region258
seq2	LTRharvest	LTR_retrotransposon	15591669	15600822	.	+	.	ID=LTR_retrotransposon258;Parent=repeat_region258;ltr_similarity=96.29;seq_number=2
seq2	LTRharvest	long_terminal_repeat	15591669	15592180	.	+	.	Parent=LTR_retrotransposon258
seq2	LTRdigest	protein_match	15594900	15595239	2.5e-27	+	.	Parent=LTR_retrotransposon258;reading_frame=0;name=rve
seq2	LTRdigest	RR_tract	15600300	15600319	.	+	.	Parent=LTR_retrotransposon258
seq2	LTRharvest	long_terminal_repeat	15600314	15600822	.	+	.	Parent=LTR_retrotransposon258
seq2	LTRharvest	target_site_duplication	15600823	15600826	.	+	.	Parent=repeat_region258
###
seq2	LTRharvest	repeat_region	15621868	15626858	.	+	.	ID=repeat_region259
seq2	LTRharvest	target_site_duplication	15621868	15621871	.	+	.	Parent=repeat_region259
seq2	LTRharvest	LTR_retrotransposon	15621872	15626854	.	+	.	ID=LTR_retrotransposon259;Parent=repeat_region259;ltr_similarity=95.18;seq_number=2
seq2	LTRharvest	long_terminal_repeat	15621872	15622035	.	+	.	Parent=LTR_retrotransposon259
seq2	LTRdigest	protein_match	15622566	15622809	5.4e-13	+	.	Parent=LTR_retrotransposon259;reading_frame=1;name=Retrotrans_gag
seq2	LTRdigest	protein_match	15624106	15624340	5.8e-11	+	.	Parent=LTR_retrotransposon259;reading_frame=2;name=rve
seq2	LTRharvest	long_terminal_repeat	15626689	15626854	.	+	.	Parent=LTR_retrotransposon259
seq2	LTRharvest	target_site_duplication	15626855	15626858	.	+	.	Parent=repeat_region259
###
seq2	LTRharvest	repeat_region	15768782	15773751	.	-	.	ID=repeat_region260
seq2	LTRharvest	target_site_duplication	15768782	15768785	.	-	.	Parent=repeat_region260
seq2	LTRharvest	LTR_retrotransposon	15768786	15773747	.	-	.	ID=LTR_retrotransposon260;Parent=repeat_region260;ltr_similarity=98.77;seq_number=2
seq2	LTRharvest	long_terminal_repeat	15768786	15768947	.	-	.	Parent=LTR_retrotransposon260
seq2	LTRdigest	RR_tract	15768920	15768927	.	-	.	Parent=LTR_retrotransposon260
seq2	LTRdigest	protein_match	15771240	15771567	5.1e-21	-	.	Parent=LTR_retrotransposon260;reading_frame=2;name=rve
seq2	LTRdigest	protein_match	15772731	15773055	3.2e-20	-	.	Parent=LTR_retrotransposon260;reading_frame=2;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	15773586	15773747	.	-	.	Parent=LTR_retrotransposon260
seq2	LTRharvest	target_site_duplication	15773748	15773751	.	-	.	Parent=repeat_region260
###
seq2	LTRharvest	repeat_region	15779149	15801239	.	+	.	ID=repeat_region261
seq2	LTRharvest	target_site_duplication	15779149	15779152	.	+	.	Parent=repeat_region261
seq2	LTRharvest	LTR_retrotransposon	15779153	15801235	.	+	.	ID=LTR_retrotransposon261;Parent=repeat_region261;ltr_similarity=84.42;seq_number=2
seq2	LTRharvest	long_terminal_repeat	15779153	15779338	.	+	.	Parent=LTR_retrotransposon261
seq2	LTRharvest	long_terminal_repeat	15801037	15801235	.	+	.	Parent=LTR_retrotransposon261
seq2	LTRdigest	RR_tract	15801046	15801064	.	+	.	Parent=LTR_retrotransposon261
seq2	LTRharvest	target_site_duplication	15801236	15801239	.	+	.	Parent=repeat_region261
###
seq2	LTRharvest	repeat_region	15919022	15924079	.	-	.	ID=repeat_region262
seq2	LTRharvest	target_site_duplication	15919022	15919025	.	-	.	Parent=repeat_region262
seq2	LTRharvest	LTR_retrotransposon	15919026	15924075	.	-	.	ID=LTR_retrotransposon262;Parent=repeat_region262;ltr_similarity=94.58;seq_number=2
seq2	LTRharvest	long_terminal_repeat	15919026	15919228	.	-	.	Parent=LTR_retrotransposon262
seq2	LTRdigest	RR_tract	15919233	15919244	.	-	.	Parent=LTR_retrotransposon262
seq2	LTRdigest	protein_match	15921464	15921794	1.2e-20	-	.	Parent=LTR_retrotransposon262;reading_frame=1;name=rve
seq2	LTRdigest	protein_match	15923009	15923282	2.2e-17	-	.	Parent=LTR_retrotransposon262;reading_frame=1;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	15923874	15924075	.	-	.	Parent=LTR_retrotransposon262
seq2	LTRharvest	target_site_duplication	15924076	15924079	.	-	.	Parent=repeat_region262
###
seq2	LTRharvest	repeat_region	16172243	16183075	.	+	.	ID=repeat_region263
seq2	LTRharvest	target_site_duplication	16172243	16172246	.	+	.	Parent=repeat_region263
seq2	LTRharvest	LTR_retrotransposon	16172247	16183071	.	+	.	ID=LTR_retrotransposon263;Parent=repeat_region263;ltr_similarity=87.62;seq_number=2
seq2	LTRharvest	long_terminal_repeat	16172247	16172351	.	+	.	Parent=LTR_retrotransposon263
seq2	LTRdigest	protein_match	16178392	16179106	0	+	.	Parent=LTR_retrotransposon263;reading_frame=1;name=RVT_1
seq2	LTRharvest	long_terminal_repeat	16182971	16183071	.	+	.	Parent=LTR_retrotransposon263
seq2	LTRharvest	target_site_duplication	16183072	16183075	.	+	.	Parent=repeat_region263
###
seq2	LTRharvest	repeat_region	16243292	16256900	.	+	.	ID=repeat_region264
seq2	LTRharvest	target_site_duplication	16243292	16243295	.	+	.	Parent=repeat_region264
seq2	LTRharvest	LTR_retrotransposon	16243296	16256896	.	+	.	ID=LTR_retrotransposon264;Parent=repeat_region264;ltr_similarity=83.74;seq_number=2
seq2	LTRharvest	long_terminal_repeat	16243296	16243418	.	+	.	Parent=LTR_retrotransposon264
seq2	LTRdigest	protein_match	16247621	16248317	8.41e-45	+	.	Parent=LTR_retrotransposon264;reading_frame=2;name=RVT_1
seq2	LTRharvest	long_terminal_repeat	16256788	16256896	.	+	.	Parent=LTR_retrotransposon264
seq2	LTRharvest	target_site_duplication	16256897	16256900	.	+	.	Parent=repeat_region264
###
seq2	LTRharvest	repeat_region	16809182	16814157	.	-	.	ID=repeat_region265
seq2	LTRharvest	target_site_duplication	16809182	16809186	.	-	.	Parent=repeat_region265
seq2	LTRharvest	LTR_retrotransposon	16809187	16814152	.	-	.	ID=LTR_retrotransposon265;Parent=repeat_region265;ltr_similarity=97.84;seq_number=2
seq2	LTRharvest	long_terminal_repeat	16809187	16809418	.	-	.	Parent=LTR_retrotransposon265
seq2	LTRdigest	protein_match	16811854	16812184	1.1e-20	-	.	Parent=LTR_retrotransposon265;reading_frame=0;name=rve
seq2	LTRdigest	protein_match	16813282	16813531	4.7e-06	-	.	Parent=LTR_retrotransposon265;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	16813921	16814152	.	-	.	Parent=LTR_retrotransposon265
seq2	LTRharvest	target_site_duplication	16814153	16814157	.	-	.	Parent=repeat_region265
###
seq2	LTRharvest	repeat_region	16826410	16832207	.	?	.	ID=repeat_region266
seq2	LTRharvest	target_site_duplication	16826410	16826413	.	?	.	Parent=repeat_region266
seq2	LTRharvest	LTR_retrotransposon	16826414	16832203	.	?	.	ID=LTR_retrotransposon266;Parent=repeat_region266;ltr_similarity=80.71;seq_number=2
seq2	LTRharvest	long_terminal_repeat	16826414	16826547	.	?	.	Parent=LTR_retrotransposon266
seq2	LTRharvest	long_terminal_repeat	16832064	16832203	.	?	.	Parent=LTR_retrotransposon266
seq2	LTRharvest	target_site_duplication	16832204	16832207	.	?	.	Parent=repeat_region266
###
seq2	LTRharvest	repeat_region	16885885	16894265	.	-	.	ID=repeat_region267
seq2	LTRharvest	target_site_duplication	16885885	16885888	.	-	.	Parent=repeat_region267
seq2	LTRharvest	LTR_retrotransposon	16885889	16894261	.	-	.	ID=LTR_retrotransposon267;Parent=repeat_region267;ltr_similarity=85.05;seq_number=2
seq2	LTRharvest	long_terminal_repeat	16885889	16885988	.	-	.	Parent=LTR_retrotransposon267
seq2	LTRdigest	RR_tract	16885982	16885990	.	-	.	Parent=LTR_retrotransposon267
seq2	LTRharvest	long_terminal_repeat	16894155	16894261	.	-	.	Parent=LTR_retrotransposon267
seq2	LTRharvest	target_site_duplication	16894262	16894265	.	-	.	Parent=repeat_region267
###
seq2	LTRharvest	repeat_region	16957460	16962736	.	-	.	ID=repeat_region268
seq2	LTRharvest	target_site_duplication	16957460	16957464	.	-	.	Parent=repeat_region268
seq2	LTRharvest	LTR_retrotransposon	16957465	16962731	.	-	.	ID=LTR_retrotransposon268;Parent=repeat_region268;ltr_similarity=97.17;seq_number=2
seq2	LTRharvest	long_terminal_repeat	16957465	16957957	.	-	.	Parent=LTR_retrotransposon268
seq2	LTRdigest	protein_match	16960379	16960724	1.7e-18	-	.	Parent=LTR_retrotransposon268;reading_frame=0;name=rve
seq2	LTRdigest	protein_match	16961678	16961915	2.5e-07	-	.	Parent=LTR_retrotransposon268;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	16962238	16962731	.	-	.	Parent=LTR_retrotransposon268
seq2	LTRharvest	target_site_duplication	16962732	16962736	.	-	.	Parent=repeat_region268
###
seq2	LTRharvest	repeat_region	17031070	17041110	.	-	.	ID=repeat_region269
seq2	LTRharvest	target_site_duplication	17031070	17031073	.	-	.	Parent=repeat_region269
seq2	LTRharvest	LTR_retrotransposon	17031074	17041106	.	-	.	ID=LTR_retrotransposon269;Parent=repeat_region269;ltr_similarity=81.22;seq_number=2
seq2	LTRharvest	long_terminal_repeat	17031074	17031271	.	-	.	Parent=LTR_retrotransposon269
seq2	LTRdigest	RR_tract	17031264	17031276	.	-	.	Parent=LTR_retrotransposon269
seq2	LTRharvest	long_terminal_repeat	17040894	17041106	.	-	.	Parent=LTR_retrotransposon269
seq2	LTRharvest	target_site_duplication	17041107	17041110	.	-	.	Parent=repeat_region269
###
seq2	LTRharvest	repeat_region	17235376	17239722	.	?	.	ID=repeat_region270
seq2	LTRharvest	target_site_duplication	17235376	17235379	.	?	.	Parent=repeat_region270
seq2	LTRharvest	LTR_retrotransposon	17235380	17239718	.	?	.	ID=LTR_retrotransposon270;Parent=repeat_region270;ltr_similarity=83.59;seq_number=2
seq2	LTRharvest	long_terminal_repeat	17235380	17235702	.	?	.	Parent=LTR_retrotransposon270
seq2	LTRharvest	long_terminal_repeat	17239403	17239718	.	?	.	Parent=LTR_retrotransposon270
seq2	LTRharvest	target_site_duplication	17239719	17239722	.	?	.	Parent=repeat_region270
###
seq2	LTRharvest	repeat_region	17354607	17359640	.	-	.	ID=repeat_region271
seq2	LTRharvest	target_site_duplication	17354607	17354611	.	-	.	Parent=repeat_region271
seq2	LTRharvest	LTR_retrotransposon	17354612	17359635	.	-	.	ID=LTR_retrotransposon271;Parent=repeat_region271;ltr_similarity=87.39;seq_number=2
seq2	LTRharvest	long_terminal_repeat	17354612	17354839	.	-	.	Parent=LTR_retrotransposon271
seq2	LTRdigest	RR_tract	17354824	17354832	.	-	.	Parent=LTR_retrotransposon271
seq2	LTRharvest	long_terminal_repeat	17359406	17359635	.	-	.	Parent=LTR_retrotransposon271
seq2	LTRharvest	target_site_duplication	17359636	17359640	.	-	.	Parent=repeat_region271
###
seq2	LTRharvest	repeat_region	17403580	17414145	.	?	.	ID=repeat_region272
seq2	LTRharvest	target_site_duplication	17403580	17403583	.	?	.	Parent=repeat_region272
seq2	LTRharvest	LTR_retrotransposon	17403584	17414141	.	?	.	ID=LTR_retrotransposon272;Parent=repeat_region272;ltr_similarity=81.90;seq_number=2
seq2	LTRharvest	long_terminal_repeat	17403584	17403699	.	?	.	Parent=LTR_retrotransposon272
seq2	LTRharvest	long_terminal_repeat	17414031	17414141	.	?	.	Parent=LTR_retrotransposon272
seq2	LTRharvest	target_site_duplication	17414142	17414145	.	?	.	Parent=repeat_region272
###
seq2	LTRharvest	repeat_region	17447385	17451851	.	+	.	ID=repeat_region273
seq2	LTRharvest	target_site_duplication	17447385	17447388	.	+	.	Parent=repeat_region273
seq2	LTRharvest	LTR_retrotransposon	17447389	17451847	.	+	.	ID=LTR_retrotransposon273;Parent=repeat_region273;ltr_similarity=90.83;seq_number=2
seq2	LTRharvest	long_terminal_repeat	17447389	17447606	.	+	.	Parent=LTR_retrotransposon273
seq2	LTRdigest	RR_tract	17451623	17451631	.	+	.	Parent=LTR_retrotransposon273
seq2	LTRharvest	long_terminal_repeat	17451630	17451847	.	+	.	Parent=LTR_retrotransposon273
seq2	LTRharvest	target_site_duplication	17451848	17451851	.	+	.	Parent=repeat_region273
###
seq2	LTRharvest	repeat_region	17978750	17983952	.	-	.	ID=repeat_region274
seq2	LTRharvest	target_site_duplication	17978750	17978753	.	-	.	Parent=repeat_region274
seq2	LTRharvest	LTR_retrotransposon	17978754	17983948	.	-	.	ID=LTR_retrotransposon274;Parent=repeat_region274;ltr_similarity=94.83;seq_number=2
seq2	LTRharvest	long_terminal_repeat	17978754	17979256	.	-	.	Parent=LTR_retrotransposon274
seq2	LTRdigest	protein_match	17981557	17981857	3.3e-20	-	.	Parent=LTR_retrotransposon274;reading_frame=0;name=rve
seq2	LTRharvest	long_terminal_repeat	17983427	17983948	.	-	.	Parent=LTR_retrotransposon274
seq2	LTRharvest	target_site_duplication	17983949	17983952	.	-	.	Parent=repeat_region274
###
seq2	LTRharvest	repeat_region	18151292	18168085	.	?	.	ID=repeat_region275
seq2	LTRharvest	target_site_duplication	18151292	18151295	.	?	.	Parent=repeat_region275
seq2	LTRharvest	LTR_retrotransposon	18151296	18168081	.	?	.	ID=LTR_retrotransposon275;Parent=repeat_region275;ltr_similarity=83.33;seq_number=2
seq2	LTRharvest	long_terminal_repeat	18151296	18151457	.	?	.	Parent=LTR_retrotransposon275
seq2	LTRharvest	long_terminal_repeat	18167932	18168081	.	?	.	Parent=LTR_retrotransposon275
seq2	LTRharvest	target_site_duplication	18168082	18168085	.	?	.	Parent=repeat_region275
###
seq2	LTRharvest	repeat_region	18169843	18174131	.	+	.	ID=repeat_region276
seq2	LTRharvest	target_site_duplication	18169843	18169846	.	+	.	Parent=repeat_region276
seq2	LTRharvest	LTR_retrotransposon	18169847	18174127	.	+	.	ID=LTR_retrotransposon276;Parent=repeat_region276;ltr_similarity=82.80;seq_number=2
seq2	LTRharvest	long_terminal_repeat	18169847	18170032	.	+	.	Parent=LTR_retrotransposon276
seq2	LTRdigest	RR_tract	18173936	18173953	.	+	.	Parent=LTR_retrotransposon276
seq2	LTRharvest	long_terminal_repeat	18173949	18174127	.	+	.	Parent=LTR_retrotransposon276
seq2	LTRharvest	target_site_duplication	18174128	18174131	.	+	.	Parent=repeat_region276
###
seq2	LTRharvest	repeat_region	18536565	18541117	.	?	.	ID=repeat_region277
seq2	LTRharvest	target_site_duplication	18536565	18536568	.	?	.	Parent=repeat_region277
seq2	LTRharvest	LTR_retrotransposon	18536569	18541113	.	?	.	ID=LTR_retrotransposon277;Parent=repeat_region277;ltr_similarity=92.21;seq_number=2
seq2	LTRharvest	long_terminal_repeat	18536569	18536719	.	?	.	Parent=LTR_retrotransposon277
seq2	LTRharvest	long_terminal_repeat	18540960	18541113	.	?	.	Parent=LTR_retrotransposon277
seq2	LTRharvest	target_site_duplication	18541114	18541117	.	?	.	Parent=repeat_region277
###
seq2	LTRharvest	repeat_region	18734244	18739397	.	-	.	ID=repeat_region278
seq2	LTRharvest	target_site_duplication	18734244	18734247	.	-	.	Parent=repeat_region278
seq2	LTRharvest	LTR_retrotransposon	18734248	18739393	.	-	.	ID=LTR_retrotransposon278;Parent=repeat_region278;ltr_similarity=95.88;seq_number=2
seq2	LTRharvest	long_terminal_repeat	18734248	18734417	.	-	.	Parent=LTR_retrotransposon278
seq2	LTRdigest	RR_tract	18734390	18734399	.	-	.	Parent=LTR_retrotransposon278
seq2	LTRharvest	long_terminal_repeat	18739231	18739393	.	-	.	Parent=LTR_retrotransposon278
seq2	LTRharvest	target_site_duplication	18739394	18739397	.	-	.	Parent=repeat_region278
###
seq2	LTRharvest	repeat_region	18791148	18796093	.	+	.	ID=repeat_region279
seq2	LTRharvest	target_site_duplication	18791148	18791151	.	+	.	Parent=repeat_region279
seq2	LTRharvest	LTR_retrotransposon	18791152	18796089	.	+	.	ID=LTR_retrotransposon279;Parent=repeat_region279;ltr_similarity=96.20;seq_number=2
seq2	LTRharvest	long_terminal_repeat	18791152	18791519	.	+	.	Parent=LTR_retrotransposon279
seq2	LTRdigest	protein_match	18791852	18792068	3.1e-08	+	.	Parent=LTR_retrotransposon279;reading_frame=1;name=Retrotrans_gag
seq2	LTRdigest	protein_match	18793088	18793421	5.1e-25	+	.	Parent=LTR_retrotransposon279;reading_frame=1;name=rve
seq2	LTRdigest	RR_tract	18795727	18795735	.	+	.	Parent=LTR_retrotransposon279
seq2	LTRharvest	long_terminal_repeat	18795736	18796089	.	+	.	Parent=LTR_retrotransposon279
seq2	LTRharvest	target_site_duplication	18796090	18796093	.	+	.	Parent=repeat_region279
###
seq2	LTRharvest	repeat_region	19290466	19296627	.	+	.	ID=repeat_region280
seq2	LTRharvest	target_site_duplication	19290466	19290469	.	+	.	Parent=repeat_region280
seq2	LTRharvest	LTR_retrotransposon	19290470	19296623	.	+	.	ID=LTR_retrotransposon280;Parent=repeat_region280;ltr_similarity=85.12;seq_number=2
seq2	LTRharvest	long_terminal_repeat	19290470	19290678	.	+	.	Parent=LTR_retrotransposon280
seq2	LTRharvest	long_terminal_repeat	19296409	19296623	.	+	.	Parent=LTR_retrotransposon280
seq2	LTRdigest	RR_tract	19296420	19296431	.	+	.	Parent=LTR_retrotransposon280
seq2	LTRharvest	target_site_duplication	19296624	19296627	.	+	.	Parent=repeat_region280
###
seq2	LTRharvest	repeat_region	19759345	19765044	.	?	.	ID=repeat_region281
seq2	LTRharvest	target_site_duplication	19759345	19759348	.	?	.	Parent=repeat_region281
seq2	LTRharvest	LTR_retrotransposon	19759349	19765040	.	?	.	ID=LTR_retrotransposon281;Parent=repeat_region281;ltr_similarity=80.21;seq_number=2
seq2	LTRharvest	long_terminal_repeat	19759349	19759537	.	?	.	Parent=LTR_retrotransposon281
seq2	LTRharvest	long_terminal_repeat	19764849	19765040	.	?	.	Parent=LTR_retrotransposon281
seq2	LTRharvest	target_site_duplication	19765041	19765044	.	?	.	Parent=repeat_region281
###
seq2	LTRharvest	repeat_region	20304941	20310172	.	-	.	ID=repeat_region282
seq2	LTRharvest	target_site_duplication	20304941	20304945	.	-	.	Parent=repeat_region282
seq2	LTRharvest	LTR_retrotransposon	20304946	20310167	.	-	.	ID=LTR_retrotransposon282;Parent=repeat_region282;ltr_similarity=98.54;seq_number=2
seq2	LTRharvest	long_terminal_repeat	20304946	20305287	.	-	.	Parent=LTR_retrotransposon282
seq2	LTRdigest	protein_match	20306025	20306349	2.6e-14	-	.	Parent=LTR_retrotransposon282;reading_frame=2;name=rve
seq2	LTRdigest	protein_match	20307408	20307885	6.4e-30	-	.	Parent=LTR_retrotransposon282;reading_frame=2;name=RVT_1
seq2	LTRdigest	protein_match	20309121	20309388	3.9e-15	-	.	Parent=LTR_retrotransposon282;reading_frame=2;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	20309827	20310167	.	-	.	Parent=LTR_retrotransposon282
seq2	LTRharvest	target_site_duplication	20310168	20310172	.	-	.	Parent=repeat_region282
###
seq2	LTRharvest	repeat_region	21485034	21491987	.	?	.	ID=repeat_region283
seq2	LTRharvest	target_site_duplication	21485034	21485037	.	?	.	Parent=repeat_region283
seq2	LTRharvest	LTR_retrotransposon	21485038	21491983	.	?	.	ID=LTR_retrotransposon283;Parent=repeat_region283;ltr_similarity=88.92;seq_number=2
seq2	LTRharvest	long_terminal_repeat	21485038	21485394	.	?	.	Parent=LTR_retrotransposon283
seq2	LTRharvest	long_terminal_repeat	21491623	21491983	.	?	.	Parent=LTR_retrotransposon283
seq2	LTRharvest	target_site_duplication	21491984	21491987	.	?	.	Parent=repeat_region283
###
seq2	LTRharvest	repeat_region	21576033	21593710	.	-	.	ID=repeat_region284
seq2	LTRharvest	target_site_duplication	21576033	21576036	.	-	.	Parent=repeat_region284
seq2	LTRharvest	LTR_retrotransposon	21576037	21593706	.	-	.	ID=LTR_retrotransposon284;Parent=repeat_region284;ltr_similarity=74.38;seq_number=2
seq2	LTRharvest	long_terminal_repeat	21576037	21576229	.	-	.	Parent=LTR_retrotransposon284
seq2	LTRdigest	RR_tract	21576203	21576222	.	-	.	Parent=LTR_retrotransposon284
seq2	LTRharvest	long_terminal_repeat	21593504	21593706	.	-	.	Parent=LTR_retrotransposon284
seq2	LTRharvest	target_site_duplication	21593707	21593710	.	-	.	Parent=repeat_region284
###
seq2	LTRharvest	repeat_region	21642925	21660068	.	?	.	ID=repeat_region285
seq2	LTRharvest	target_site_duplication	21642925	21642928	.	?	.	Parent=repeat_region285
seq2	LTRharvest	LTR_retrotransposon	21642929	21660064	.	?	.	ID=LTR_retrotransposon285;Parent=repeat_region285;ltr_similarity=85.36;seq_number=2
seq2	LTRharvest	long_terminal_repeat	21642929	21643290	.	?	.	Parent=LTR_retrotransposon285
seq2	LTRharvest	long_terminal_repeat	21659712	21660064	.	?	.	Parent=LTR_retrotransposon285
seq2	LTRharvest	target_site_duplication	21660065	21660068	.	?	.	Parent=repeat_region285
###
seq2	LTRharvest	repeat_region	21894817	21904627	.	-	.	ID=repeat_region286
seq2	LTRharvest	target_site_duplication	21894817	21894820	.	-	.	Parent=repeat_region286
seq2	LTRharvest	LTR_retrotransposon	21894821	21904623	.	-	.	ID=LTR_retrotransposon286;Parent=repeat_region286;ltr_similarity=81.43;seq_number=2
seq2	LTRharvest	long_terminal_repeat	21894821	21894960	.	-	.	Parent=LTR_retrotransposon286
seq2	LTRdigest	RR_tract	21894969	21894977	.	-	.	Parent=LTR_retrotransposon286
seq2	LTRharvest	long_terminal_repeat	21904490	21904623	.	-	.	Parent=LTR_retrotransposon286
seq2	LTRharvest	target_site_duplication	21904624	21904627	.	-	.	Parent=repeat_region286
###
seq2	LTRharvest	repeat_region	21971051	21975272	.	+	.	ID=repeat_region287
seq2	LTRharvest	target_site_duplication	21971051	21971054	.	+	.	Parent=repeat_region287
seq2	LTRharvest	LTR_retrotransposon	21971055	21975268	.	+	.	ID=LTR_retrotransposon287;Parent=repeat_region287;ltr_similarity=79.49;seq_number=2
seq2	LTRharvest	long_terminal_repeat	21971055	21971210	.	+	.	Parent=LTR_retrotransposon287
seq2	LTRdigest	RR_tract	21975102	21975113	.	+	.	Parent=LTR_retrotransposon287
seq2	LTRharvest	long_terminal_repeat	21975114	21975268	.	+	.	Parent=LTR_retrotransposon287
seq2	LTRharvest	target_site_duplication	21975269	21975272	.	+	.	Parent=repeat_region287
###
seq2	LTRharvest	repeat_region	22014997	22020674	.	?	.	ID=repeat_region288
seq2	LTRharvest	target_site_duplication	22014997	22015000	.	?	.	Parent=repeat_region288
seq2	LTRharvest	LTR_retrotransposon	22015001	22020670	.	?	.	ID=LTR_retrotransposon288;Parent=repeat_region288;ltr_similarity=81.52;seq_number=2
seq2	LTRharvest	long_terminal_repeat	22015001	22015184	.	?	.	Parent=LTR_retrotransposon288
seq2	LTRharvest	long_terminal_repeat	22020491	22020670	.	?	.	Parent=LTR_retrotransposon288
seq2	LTRharvest	target_site_duplication	22020671	22020674	.	?	.	Parent=repeat_region288
###
seq2	LTRharvest	repeat_region	22059530	22064334	.	+	.	ID=repeat_region289
seq2	LTRharvest	target_site_duplication	22059530	22059534	.	+	.	Parent=repeat_region289
seq2	LTRharvest	LTR_retrotransposon	22059535	22064329	.	+	.	ID=LTR_retrotransposon289;Parent=repeat_region289;ltr_similarity=99.77;seq_number=2
seq2	LTRharvest	long_terminal_repeat	22059535	22059974	.	+	.	Parent=LTR_retrotransposon289
seq2	LTRdigest	protein_match	22061574	22061925	4e-27	+	.	Parent=LTR_retrotransposon289;reading_frame=2;name=rve
seq2	LTRdigest	RR_tract	22063881	22063889	.	+	.	Parent=LTR_retrotransposon289
seq2	LTRharvest	long_terminal_repeat	22063890	22064329	.	+	.	Parent=LTR_retrotransposon289
seq2	LTRharvest	target_site_duplication	22064330	22064334	.	+	.	Parent=repeat_region289
###
seq2	LTRharvest	repeat_region	22232186	22236824	.	+	.	ID=repeat_region290
seq2	LTRharvest	target_site_duplication	22232186	22232189	.	+	.	Parent=repeat_region290
seq2	LTRharvest	LTR_retrotransposon	22232190	22236820	.	+	.	ID=LTR_retrotransposon290;Parent=repeat_region290;ltr_similarity=88.17;seq_number=2
seq2	LTRharvest	long_terminal_repeat	22232190	22232439	.	+	.	Parent=LTR_retrotransposon290
seq2	LTRdigest	protein_match	22233994	22234336	6.1e-25	+	.	Parent=LTR_retrotransposon290;reading_frame=1;name=rve
seq2	LTRdigest	RR_tract	22236550	22236558	.	+	.	Parent=LTR_retrotransposon290
seq2	LTRharvest	long_terminal_repeat	22236559	22236820	.	+	.	Parent=LTR_retrotransposon290
seq2	LTRharvest	target_site_duplication	22236821	22236824	.	+	.	Parent=repeat_region290
###
seq2	LTRharvest	repeat_region	22237225	22242470	.	-	.	ID=repeat_region291
seq2	LTRharvest	target_site_duplication	22237225	22237228	.	-	.	Parent=repeat_region291
seq2	LTRharvest	LTR_retrotransposon	22237229	22242466	.	-	.	ID=LTR_retrotransposon291;Parent=repeat_region291;ltr_similarity=99.66;seq_number=2
seq2	LTRharvest	long_terminal_repeat	22237229	22238122	.	-	.	Parent=LTR_retrotransposon291
seq2	LTRdigest	primer_binding_site	22241549	22241567	3.8	-	.	Parent=LTR_retrotransposon291;trna=Arabidopsis_thaliana_tRNA-Lys-TTT-1-1 (chr1.trna180-LysTTT) chr1:29833117-29833188 (+) Lys (TTT) 72 bp Sc: 87.3;trnaoffset=0;pbsoffset=5;edist=1
seq2	LTRharvest	long_terminal_repeat	22241573	22242466	.	-	.	Parent=LTR_retrotransposon291
seq2	LTRharvest	target_site_duplication	22242467	22242470	.	-	.	Parent=repeat_region291
###
seq2	LTRharvest	repeat_region	22334463	22341337	.	?	.	ID=repeat_region292
seq2	LTRharvest	target_site_duplication	22334463	22334466	.	?	.	Parent=repeat_region292
seq2	LTRharvest	LTR_retrotransposon	22334467	22341333	.	?	.	ID=LTR_retrotransposon292;Parent=repeat_region292;ltr_similarity=79.28;seq_number=2
seq2	LTRharvest	long_terminal_repeat	22334467	22334799	.	?	.	Parent=LTR_retrotransposon292
seq2	LTRharvest	long_terminal_repeat	22341008	22341333	.	?	.	Parent=LTR_retrotransposon292
seq2	LTRharvest	target_site_duplication	22341334	22341337	.	?	.	Parent=repeat_region292
###
seq2	LTRharvest	repeat_region	22513583	22521228	.	-	.	ID=repeat_region293
seq2	LTRharvest	target_site_duplication	22513583	22513586	.	-	.	Parent=repeat_region293
seq2	LTRharvest	LTR_retrotransposon	22513587	22521224	.	-	.	ID=LTR_retrotransposon293;Parent=repeat_region293;ltr_similarity=85.81;seq_number=2
seq2	LTRharvest	long_terminal_repeat	22513587	22513730	.	-	.	Parent=LTR_retrotransposon293
seq2	LTRdigest	protein_match	22517878	22518127	3.2e-12	-	.	Parent=LTR_retrotransposon293;reading_frame=1;name=rve
seq2	LTRdigest	protein_match	22518750	22518981	1.1e-07	-	.	Parent=LTR_retrotransposon293;reading_frame=2;name=RNase_H
seq2	LTRdigest	protein_match	22519595	22519817	9.7e-15	-	.	Parent=LTR_retrotransposon293;reading_frame=0;name=RVT_1
seq2	LTRdigest	protein_match	22519934	22520162	6.6e-17	-	.	Parent=LTR_retrotransposon293;reading_frame=0;name=Retrotrans_gag
seq2	LTRharvest	long_terminal_repeat	22521077	22521224	.	-	.	Parent=LTR_retrotransposon293
seq2	LTRharvest	target_site_duplication	22521225	22521228	.	-	.	Parent=repeat_region293
###
seq2	LTRharvest	repeat_region	22695561	22700526	.	-	.	ID=repeat_region294
seq2	LTRharvest	target_site_duplication	22695561	22695565	.	-	.	Parent=repeat_region294
seq2	LTRharvest	LTR_retrotransposon	22695566	22700521	.	-	.	ID=LTR_retrotransposon294;Parent=repeat_region294;ltr_similarity=100.00;seq_number=2
seq2	LTRharvest	long_terminal_repeat	22695566	22696005	.	-	.	Parent=LTR_retrotransposon294
seq2	LTRdigest	RR_tract	22695993	22696001	.	-	.	Parent=LTR_retrotransposon294
seq2	LTRdigest	protein_match	22698131	22698482	2.1e-28	-	.	Parent=LTR_retrotransposon294;reading_frame=2;name=rve
seq2	LTRharvest	long_terminal_repeat	22700082	22700521	.	-	.	Parent=LTR_retrotransposon294
seq2	LTRharvest	target_site_duplication	22700522	22700526	.	-	.	Parent=repeat_region294
###
seq2	LTRharvest	repeat_region	23100309	23104857	.	-	.	ID=repeat_region295
seq2	LTRharvest	target_site_duplication	23100309	23100312	.	-	.	Parent=repeat_region295
seq2	LTRharvest	LTR_retrotransposon	23100313	23104853	.	-	.	ID=LTR_retrotransposon295;Parent=repeat_region295;ltr_similarity=96.82;seq_number=2
seq2	LTRharvest	long_terminal_repeat	23100313	23100532	.	-	.	Parent=LTR_retrotransposon295
seq2	LTRdigest	protein_match	23102757	23103108	2.1e-28	-	.	Parent=LTR_retrotransposon295;reading_frame=2;name=rve
seq2	LTRharvest	long_terminal_repeat	23104635	23104853	.	-	.	Parent=LTR_retrotransposon295
seq2	LTRharvest	target_site_duplication	23104854	23104857	.	-	.	Parent=repeat_region295
###
seq3	LTRharvest	repeat_region	178042	186890	.	?	.	ID=repeat_region296
seq3	LTRharvest	target_site_duplication	178042	178045	.	?	.	Parent=repeat_region296
seq3	LTRharvest	LTR_retrotransposon	178046	186886	.	?	.	ID=LTR_retrotransposon296;Parent=repeat_region296;ltr_similarity=90.29;seq_number=3
seq3	LTRharvest	long_terminal_repeat	178046	178148	.	?	.	Parent=LTR_retrotransposon296
seq3	LTRharvest	long_terminal_repeat	186785	186886	.	?	.	Parent=LTR_retrotransposon296
seq3	LTRharvest	target_site_duplication	186887	186890	.	?	.	Parent=repeat_region296
###
seq3	LTRharvest	repeat_region	1340155	1351878	.	?	.	ID=repeat_region297
seq3	LTRharvest	target_site_duplication	1340155	1340158	.	?	.	Parent=repeat_region297
seq3	LTRharvest	LTR_retrotransposon	1340159	1351874	.	?	.	ID=LTR_retrotransposon297;Parent=repeat_region297;ltr_similarity=87.90;seq_number=3
seq3	LTRharvest	long_terminal_repeat	1340159	1340282	.	?	.	Parent=LTR_retrotransposon297
seq3	LTRharvest	long_terminal_repeat	1351752	1351874	.	?	.	Parent=LTR_retrotransposon297
seq3	LTRharvest	target_site_duplication	1351875	1351878	.	?	.	Parent=repeat_region297
###
seq3	LTRharvest	repeat_region	1473817	1478348	.	-	.	ID=repeat_region298
seq3	LTRharvest	target_site_duplication	1473817	1473820	.	-	.	Parent=repeat_region298
seq3	LTRharvest	LTR_retrotransposon	1473821	1478344	.	-	.	ID=LTR_retrotransposon298;Parent=repeat_region298;ltr_similarity=84.43;seq_number=3
seq3	LTRharvest	long_terminal_repeat	1473821	1473933	.	-	.	Parent=LTR_retrotransposon298
seq3	LTRdigest	RR_tract	1473935	1473943	.	-	.	Parent=LTR_retrotransposon298
seq3	LTRdigest	primer_binding_site	1478207	1478218	2.87	-	.	Parent=LTR_retrotransposon298;trna=Arabidopsis_thaliana_tRNA-Thr-TGT-4-1 (chr3.trna53-ThrTGT) chr3:21959510-21959580 (+) Thr (TGT) 71 bp Sc: 66.3;trnaoffset=3;pbsoffset=4;edist=1
seq3	LTRharvest	long_terminal_repeat	1478223	1478344	.	-	.	Parent=LTR_retrotransposon298
seq3	LTRharvest	target_site_duplication	1478345	1478348	.	-	.	Parent=repeat_region298
###
seq3	LTRharvest	repeat_region	1619050	1624385	.	+	.	ID=repeat_region299
seq3	LTRharvest	target_site_duplication	1619050	1619053	.	+	.	Parent=repeat_region299
seq3	LTRharvest	LTR_retrotransposon	1619054	1624381	.	+	.	ID=LTR_retrotransposon299;Parent=repeat_region299;ltr_similarity=98.70;seq_number=3
seq3	LTRharvest	long_terminal_repeat	1619054	1619283	.	+	.	Parent=LTR_retrotransposon299
seq3	LTRdigest	protein_match	1620127	1620415	3.5e-28	+	.	Parent=LTR_retrotransposon299;reading_frame=2;name=Retrotrans_gag
seq3	LTRdigest	protein_match	1621794	1622205	1.4e-29	+	.	Parent=LTR_retrotransposon299;reading_frame=1;name=RVT_1
seq3	LTRdigest	protein_match	1623317	1623623	1.4e-14	+	.	Parent=LTR_retrotransposon299;reading_frame=0;name=rve
seq3	LTRharvest	long_terminal_repeat	1624151	1624381	.	+	.	Parent=LTR_retrotransposon299
seq3	LTRharvest	target_site_duplication	1624382	1624385	.	+	.	Parent=repeat_region299
###
seq3	LTRharvest	repeat_region	1749265	1755811	.	+	.	ID=repeat_region300
seq3	LTRharvest	target_site_duplication	1749265	1749268	.	+	.	Parent=repeat_region300
seq3	LTRharvest	LTR_retrotransposon	1749269	1755807	.	+	.	ID=LTR_retrotransposon300;Parent=repeat_region300;ltr_similarity=97.12;seq_number=3
seq3	LTRharvest	long_terminal_repeat	1749269	1749855	.	+	.	Parent=LTR_retrotransposon300
seq3	LTRdigest	protein_match	1751919	1752261	1.9e-27	+	.	Parent=LTR_retrotransposon300;reading_frame=1;name=rve
seq3	LTRharvest	long_terminal_repeat	1755218	1755807	.	+	.	Parent=LTR_retrotransposon300
seq3	LTRharvest	target_site_duplication	1755808	1755811	.	+	.	Parent=repeat_region300
###
seq3	LTRharvest	repeat_region	1814104	1818637	.	-	.	ID=repeat_region301
seq3	LTRharvest	target_site_duplication	1814104	1814107	.	-	.	Parent=repeat_region301
seq3	LTRharvest	LTR_retrotransposon	1814108	1818633	.	-	.	ID=LTR_retrotransposon301;Parent=repeat_region301;ltr_similarity=90.65;seq_number=3
seq3	LTRharvest	long_terminal_repeat	1814108	1814521	.	-	.	Parent=LTR_retrotransposon301
seq3	LTRdigest	protein_match	1817466	1817745	1.1e-15	-	.	Parent=LTR_retrotransposon301;reading_frame=0;name=Retrotrans_gag
seq3	LTRharvest	long_terminal_repeat	1818206	1818633	.	-	.	Parent=LTR_retrotransposon301
seq3	LTRharvest	target_site_duplication	1818634	1818637	.	-	.	Parent=repeat_region301
###
seq3	LTRharvest	repeat_region	1943792	1955326	.	+	.	ID=repeat_region302
seq3	LTRharvest	target_site_duplication	1943792	1943796	.	+	.	Parent=repeat_region302
seq3	LTRharvest	LTR_retrotransposon	1943797	1955321	.	+	.	ID=LTR_retrotransposon302;Parent=repeat_region302;ltr_similarity=95.07;seq_number=3
seq3	LTRharvest	long_terminal_repeat	1943797	1944303	.	+	.	Parent=LTR_retrotransposon302
seq3	LTRdigest	primer_binding_site	1944309	1944323	15	+	.	Parent=LTR_retrotransposon302;trna=Arabidopsis_thaliana_tRNA-Lys-TTT-1-1 (chr1.trna180-LysTTT) chr1:29833117-29833188 (+) Lys (TTT) 72 bp Sc: 87.3;trnaoffset=0;pbsoffset=5;edist=0
seq3	LTRdigest	protein_match	1945503	1945731	3.6e-18	+	.	Parent=LTR_retrotransposon302;reading_frame=2;name=Retrotrans_gag
seq3	LTRdigest	protein_match	1947432	1947627	2.5e-06	+	.	Parent=LTR_retrotransposon302;reading_frame=2;name=RVT_1
seq3	LTRdigest	protein_match	1947644	1947908	1e-17	+	.	Parent=LTR_retrotransposon302;reading_frame=1;name=RVT_1
seq3	LTRdigest	protein_match	1949728	1949878	6.4e-06	+	.	Parent=LTR_retrotransposon302;reading_frame=0;name=rve
seq3	LTRharvest	long_terminal_repeat	1954829	1955321	.	+	.	Parent=LTR_retrotransposon302
seq3	LTRharvest	target_site_duplication	1955322	1955326	.	+	.	Parent=repeat_region302
###
seq3	LTRharvest	repeat_region	2001189	2010889	.	+	.	ID=repeat_region303
seq3	LTRharvest	target_site_duplication	2001189	2001192	.	+	.	Parent=repeat_region303
seq3	LTRharvest	LTR_retrotransposon	2001193	2010885	.	+	.	ID=LTR_retrotransposon303;Parent=repeat_region303;ltr_similarity=94.90;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2001193	2001918	.	+	.	Parent=LTR_retrotransposon303
seq3	LTRdigest	protein_match	2002880	2002997	1.4e-07	+	.	Parent=LTR_retrotransposon303;reading_frame=1;name=Retrotrans_gag
seq3	LTRdigest	protein_match	2002981	2003134	4e-06	+	.	Parent=LTR_retrotransposon303;reading_frame=0;name=Retrotrans_gag
seq3	LTRdigest	protein_match	2004836	2005055	3e-07	+	.	Parent=LTR_retrotransposon303;reading_frame=1;name=RVT_1
seq3	LTRdigest	protein_match	2005060	2005294	1.1e-10	+	.	Parent=LTR_retrotransposon303;reading_frame=0;name=RVT_1
seq3	LTRdigest	protein_match	2006864	2007197	1.1e-14	+	.	Parent=LTR_retrotransposon303;reading_frame=1;name=rve
seq3	LTRharvest	long_terminal_repeat	2010160	2010885	.	+	.	Parent=LTR_retrotransposon303
seq3	LTRharvest	target_site_duplication	2010886	2010889	.	+	.	Parent=repeat_region303
###
seq3	LTRharvest	repeat_region	2064085	2068822	.	-	.	ID=repeat_region304
seq3	LTRharvest	target_site_duplication	2064085	2064088	.	-	.	Parent=repeat_region304
seq3	LTRharvest	LTR_retrotransposon	2064089	2068818	.	-	.	ID=LTR_retrotransposon304;Parent=repeat_region304;ltr_similarity=89.61;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2064089	2064319	.	-	.	Parent=LTR_retrotransposon304
seq3	LTRdigest	protein_match	2066875	2067211	5.2e-23	-	.	Parent=LTR_retrotransposon304;reading_frame=2;name=rve
seq3	LTRharvest	long_terminal_repeat	2068598	2068818	.	-	.	Parent=LTR_retrotransposon304
seq3	LTRharvest	target_site_duplication	2068819	2068822	.	-	.	Parent=repeat_region304
###
seq3	LTRharvest	repeat_region	2188974	2194318	.	+	.	ID=repeat_region305
seq3	LTRharvest	target_site_duplication	2188974	2188977	.	+	.	Parent=repeat_region305
seq3	LTRharvest	LTR_retrotransposon	2188978	2194314	.	+	.	ID=LTR_retrotransposon305;Parent=repeat_region305;ltr_similarity=100.00;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2188978	2189368	.	+	.	Parent=LTR_retrotransposon305
seq3	LTRdigest	protein_match	2191041	2191377	2.7e-27	+	.	Parent=LTR_retrotransposon305;reading_frame=2;name=rve
seq3	LTRdigest	RR_tract	2193916	2193924	.	+	.	Parent=LTR_retrotransposon305
seq3	LTRharvest	long_terminal_repeat	2193924	2194314	.	+	.	Parent=LTR_retrotransposon305
seq3	LTRharvest	target_site_duplication	2194315	2194318	.	+	.	Parent=repeat_region305
###
seq3	LTRharvest	repeat_region	2198163	2204000	.	-	.	ID=repeat_region306
seq3	LTRharvest	target_site_duplication	2198163	2198166	.	-	.	Parent=repeat_region306
seq3	LTRharvest	LTR_retrotransposon	2198167	2203996	.	-	.	ID=LTR_retrotransposon306;Parent=repeat_region306;ltr_similarity=98.19;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2198167	2198717	.	-	.	Parent=LTR_retrotransposon306
seq3	LTRdigest	RR_tract	2198716	2198728	.	-	.	Parent=LTR_retrotransposon306
seq3	LTRharvest	long_terminal_repeat	2203444	2203996	.	-	.	Parent=LTR_retrotransposon306
seq3	LTRharvest	target_site_duplication	2203997	2204000	.	-	.	Parent=repeat_region306
###
seq3	LTRharvest	repeat_region	2243439	2261160	.	-	.	ID=repeat_region307
seq3	LTRharvest	target_site_duplication	2243439	2243442	.	-	.	Parent=repeat_region307
seq3	LTRharvest	LTR_retrotransposon	2243443	2261156	.	-	.	ID=LTR_retrotransposon307;Parent=repeat_region307;ltr_similarity=82.24;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2243443	2243656	.	-	.	Parent=LTR_retrotransposon307
seq3	LTRdigest	RR_tract	2243653	2243661	.	-	.	Parent=LTR_retrotransposon307
seq3	LTRharvest	long_terminal_repeat	2260951	2261156	.	-	.	Parent=LTR_retrotransposon307
seq3	LTRharvest	target_site_duplication	2261157	2261160	.	-	.	Parent=repeat_region307
###
seq3	LTRharvest	repeat_region	2279944	2286709	.	+	.	ID=repeat_region308
seq3	LTRharvest	target_site_duplication	2279944	2279947	.	+	.	Parent=repeat_region308
seq3	LTRharvest	LTR_retrotransposon	2279948	2286705	.	+	.	ID=LTR_retrotransposon308;Parent=repeat_region308;ltr_similarity=91.96;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2279948	2280388	.	+	.	Parent=LTR_retrotransposon308
seq3	LTRdigest	RR_tract	2286248	2286259	.	+	.	Parent=LTR_retrotransposon308
seq3	LTRharvest	long_terminal_repeat	2286258	2286705	.	+	.	Parent=LTR_retrotransposon308
seq3	LTRharvest	target_site_duplication	2286706	2286709	.	+	.	Parent=repeat_region308
###
seq3	LTRharvest	repeat_region	2302653	2307847	.	+	.	ID=repeat_region309
seq3	LTRharvest	target_site_duplication	2302653	2302656	.	+	.	Parent=repeat_region309
seq3	LTRharvest	LTR_retrotransposon	2302657	2307843	.	+	.	ID=LTR_retrotransposon309;Parent=repeat_region309;ltr_similarity=95.12;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2302657	2303148	.	+	.	Parent=LTR_retrotransposon309
seq3	LTRdigest	protein_match	2304859	2305066	9.8e-18	+	.	Parent=LTR_retrotransposon309;reading_frame=0;name=rve
seq3	LTRharvest	long_terminal_repeat	2307362	2307843	.	+	.	Parent=LTR_retrotransposon309
seq3	LTRharvest	target_site_duplication	2307844	2307847	.	+	.	Parent=repeat_region309
###
seq3	LTRharvest	repeat_region	2442380	2446885	.	?	.	ID=repeat_region310
seq3	LTRharvest	target_site_duplication	2442380	2442383	.	?	.	Parent=repeat_region310
seq3	LTRharvest	LTR_retrotransposon	2442384	2446881	.	?	.	ID=LTR_retrotransposon310;Parent=repeat_region310;ltr_similarity=83.98;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2442384	2442589	.	?	.	Parent=LTR_retrotransposon310
seq3	LTRharvest	long_terminal_repeat	2446689	2446881	.	?	.	Parent=LTR_retrotransposon310
seq3	LTRharvest	target_site_duplication	2446882	2446885	.	?	.	Parent=repeat_region310
###
seq3	LTRharvest	repeat_region	2597016	2602184	.	-	.	ID=repeat_region311
seq3	LTRharvest	target_site_duplication	2597016	2597019	.	-	.	Parent=repeat_region311
seq3	LTRharvest	LTR_retrotransposon	2597020	2602180	.	-	.	ID=LTR_retrotransposon311;Parent=repeat_region311;ltr_similarity=94.89;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2597020	2597469	.	-	.	Parent=LTR_retrotransposon311
seq3	LTRdigest	protein_match	2599894	2600236	1.8e-21	-	.	Parent=LTR_retrotransposon311;reading_frame=0;name=rve
seq3	LTRharvest	long_terminal_repeat	2601735	2602180	.	-	.	Parent=LTR_retrotransposon311
seq3	LTRharvest	target_site_duplication	2602181	2602184	.	-	.	Parent=repeat_region311
###
seq3	LTRharvest	repeat_region	2615225	2622569	.	?	.	ID=repeat_region312
seq3	LTRharvest	target_site_duplication	2615225	2615228	.	?	.	Parent=repeat_region312
seq3	LTRharvest	LTR_retrotransposon	2615229	2622565	.	?	.	ID=LTR_retrotransposon312;Parent=repeat_region312;ltr_similarity=79.87;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2615229	2615387	.	?	.	Parent=LTR_retrotransposon312
seq3	LTRharvest	long_terminal_repeat	2622424	2622565	.	?	.	Parent=LTR_retrotransposon312
seq3	LTRharvest	target_site_duplication	2622566	2622569	.	?	.	Parent=repeat_region312
###
seq3	LTRharvest	repeat_region	2763289	2771371	.	?	.	ID=repeat_region313
seq3	LTRharvest	target_site_duplication	2763289	2763292	.	?	.	Parent=repeat_region313
seq3	LTRharvest	LTR_retrotransposon	2763293	2771367	.	?	.	ID=LTR_retrotransposon313;Parent=repeat_region313;ltr_similarity=77.13;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2763293	2763465	.	?	.	Parent=LTR_retrotransposon313
seq3	LTRharvest	long_terminal_repeat	2771180	2771367	.	?	.	Parent=LTR_retrotransposon313
seq3	LTRharvest	target_site_duplication	2771368	2771371	.	?	.	Parent=repeat_region313
###
seq3	LTRharvest	repeat_region	2867758	2875917	.	-	.	ID=repeat_region314
seq3	LTRharvest	target_site_duplication	2867758	2867761	.	-	.	Parent=repeat_region314
seq3	LTRharvest	LTR_retrotransposon	2867762	2875913	.	-	.	ID=LTR_retrotransposon314;Parent=repeat_region314;ltr_similarity=96.79;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2867762	2868909	.	-	.	Parent=LTR_retrotransposon314
seq3	LTRdigest	RR_tract	2868883	2868890	.	-	.	Parent=LTR_retrotransposon314
seq3	LTRdigest	protein_match	2870570	2870897	9e-13	-	.	Parent=LTR_retrotransposon314;reading_frame=0;name=rve
seq3	LTRdigest	protein_match	2872010	2872490	1.5e-31	-	.	Parent=LTR_retrotransposon314;reading_frame=0;name=RVT_1
seq3	LTRdigest	protein_match	2873698	2873980	2.6e-23	-	.	Parent=LTR_retrotransposon314;reading_frame=1;name=Retrotrans_gag
seq3	LTRharvest	long_terminal_repeat	2874761	2875913	.	-	.	Parent=LTR_retrotransposon314
seq3	LTRharvest	target_site_duplication	2875914	2875917	.	-	.	Parent=repeat_region314
###
seq3	LTRharvest	repeat_region	2989826	2994792	.	?	.	ID=repeat_region315
seq3	LTRharvest	target_site_duplication	2989826	2989829	.	?	.	Parent=repeat_region315
seq3	LTRharvest	LTR_retrotransposon	2989830	2994788	.	?	.	ID=LTR_retrotransposon315;Parent=repeat_region315;ltr_similarity=97.90;seq_number=3
seq3	LTRharvest	long_terminal_repeat	2989830	2990401	.	?	.	Parent=LTR_retrotransposon315
seq3	LTRharvest	long_terminal_repeat	2994219	2994788	.	?	.	Parent=LTR_retrotransposon315
seq3	LTRharvest	target_site_duplication	2994789	2994792	.	?	.	Parent=repeat_region315
###
seq3	LTRharvest	repeat_region	3704581	3716729	.	-	.	ID=repeat_region316
seq3	LTRharvest	target_site_duplication	3704581	3704586	.	-	.	Parent=repeat_region316
seq3	LTRharvest	LTR_retrotransposon	3704587	3716723	.	-	.	ID=LTR_retrotransposon316;Parent=repeat_region316;ltr_similarity=91.90;seq_number=3
seq3	LTRharvest	long_terminal_repeat	3704587	3705092	.	-	.	Parent=LTR_retrotransposon316
seq3	LTRdigest	protein_match	3711304	3711637	5.5e-21	-	.	Parent=LTR_retrotransposon316;reading_frame=1;name=rve
seq3	LTRdigest	protein_match	3713324	3713807	5e-21	-	.	Parent=LTR_retrotransposon316;reading_frame=0;name=RVT_1
seq3	LTRdigest	protein_match	3715216	3715492	4.7e-20	-	.	Parent=LTR_retrotransposon316;reading_frame=1;name=Retrotrans_gag
seq3	LTRharvest	long_terminal_repeat	3716221	3716723	.	-	.	Parent=LTR_retrotransposon316
seq3	LTRharvest	target_site_duplication	3716724	3716729	.	-	.	Parent=repeat_region316
###
seq3	LTRharvest	repeat_region	3881646	3886435	.	+	.	ID=repeat_region317
seq3	LTRharvest	target_site_duplication	3881646	3881649	.	+	.	Parent=repeat_region317
seq3	LTRharvest	LTR_retrotransposon	3881650	3886431	.	+	.	ID=LTR_retrotransposon317;Parent=repeat_region317;ltr_similarity=87.30;seq_number=3
seq3	LTRharvest	long_terminal_repeat	3881650	3881823	.	+	.	Parent=LTR_retrotransposon317
seq3	LTRdigest	protein_match	3884012	3884417	1.9e-26	+	.	Parent=LTR_retrotransposon317;reading_frame=1;name=RVT_1
seq3	LTRdigest	RR_tract	3886229	3886249	.	+	.	Parent=LTR_retrotransposon317
seq3	LTRharvest	long_terminal_repeat	3886243	3886431	.	+	.	Parent=LTR_retrotransposon317
seq3	LTRharvest	target_site_duplication	3886432	3886435	.	+	.	Parent=repeat_region317
###
seq3	LTRharvest	repeat_region	3907462	3915204	.	+	.	ID=repeat_region318
seq3	LTRharvest	target_site_duplication	3907462	3907465	.	+	.	Parent=repeat_region318
seq3	LTRharvest	LTR_retrotransposon	3907466	3915200	.	+	.	ID=LTR_retrotransposon318;Parent=repeat_region318;ltr_similarity=96.72;seq_number=3
seq3	LTRharvest	long_terminal_repeat	3907466	3908075	.	+	.	Parent=LTR_retrotransposon318
seq3	LTRdigest	RR_tract	3914577	3914586	.	+	.	Parent=LTR_retrotransposon318
seq3	LTRharvest	long_terminal_repeat	3914591	3915200	.	+	.	Parent=LTR_retrotransposon318
seq3	LTRharvest	target_site_duplication	3915201	3915204	.	+	.	Parent=repeat_region318
###
seq3	LTRharvest	repeat_region	4464326	4482522	.	?	.	ID=repeat_region319
seq3	LTRharvest	target_site_duplication	4464326	4464331	.	?	.	Parent=repeat_region319
seq3	LTRharvest	LTR_retrotransposon	4464332	4482516	.	?	.	ID=LTR_retrotransposon319;Parent=repeat_region319;ltr_similarity=94.90;seq_number=3
seq3	LTRharvest	long_terminal_repeat	4464332	4465306	.	?	.	Parent=LTR_retrotransposon319
seq3	LTRharvest	long_terminal_repeat	4481536	4482516	.	?	.	Parent=LTR_retrotransposon319
seq3	LTRharvest	target_site_duplication	4482517	4482522	.	?	.	Parent=repeat_region319
###
seq3	LTRharvest	repeat_region	4623482	4628230	.	-	.	ID=repeat_region320
seq3	LTRharvest	target_site_duplication	4623482	4623485	.	-	.	Parent=repeat_region320
seq3	LTRharvest	LTR_retrotransposon	4623486	4628226	.	-	.	ID=LTR_retrotransposon320;Parent=repeat_region320;ltr_similarity=90.91;seq_number=3
seq3	LTRharvest	long_terminal_repeat	4623486	4623737	.	-	.	Parent=LTR_retrotransposon320
seq3	LTRdigest	protein_match	4625824	4625932	5.6e-09	-	.	Parent=LTR_retrotransposon320;reading_frame=2;name=rve
seq3	LTRdigest	protein_match	4625921	4626197	4.5e-17	-	.	Parent=LTR_retrotransposon320;reading_frame=1;name=rve
seq3	LTRharvest	long_terminal_repeat	4627974	4628226	.	-	.	Parent=LTR_retrotransposon320
seq3	LTRharvest	target_site_duplication	4628227	4628230	.	-	.	Parent=repeat_region320
###
seq3	LTRharvest	repeat_region	4677137	4684199	.	-	.	ID=repeat_region321
seq3	LTRharvest	target_site_duplication	4677137	4677140	.	-	.	Parent=repeat_region321
seq3	LTRharvest	LTR_retrotransposon	4677141	4684195	.	-	.	ID=LTR_retrotransposon321;Parent=repeat_region321;ltr_similarity=94.41;seq_number=3
seq3	LTRharvest	long_terminal_repeat	4677141	4678300	.	-	.	Parent=LTR_retrotransposon321
seq3	LTRdigest	protein_match	4680218	4680698	2.7e-30	-	.	Parent=LTR_retrotransposon321;reading_frame=2;name=RVT_1
seq3	LTRdigest	protein_match	4682016	4682304	1.1e-22	-	.	Parent=LTR_retrotransposon321;reading_frame=1;name=Retrotrans_gag
seq3	LTRharvest	long_terminal_repeat	4683033	4684195	.	-	.	Parent=LTR_retrotransposon321
seq3	LTRharvest	target_site_duplication	4684196	4684199	.	-	.	Parent=repeat_region321
###
seq3	LTRharvest	repeat_region	4958191	4969602	.	+	.	ID=repeat_region322
seq3	LTRharvest	target_site_duplication	4958191	4958194	.	+	.	Parent=repeat_region322
seq3	LTRharvest	LTR_retrotransposon	4958195	4969598	.	+	.	ID=LTR_retrotransposon322;Parent=repeat_region322;ltr_similarity=97.51;seq_number=3
seq3	LTRharvest	long_terminal_repeat	4958195	4960001	.	+	.	Parent=LTR_retrotransposon322
seq3	LTRdigest	primer_binding_site	4960001	4960013	13	+	.	Parent=LTR_retrotransposon322;trna=Arabidopsis_thaliana_tRNA-Asp-GTC-7-1 (chr1.trna211-AspGTC) chr1:16585702-16585776 (-) Asp (GTC) 75 bp Sc: 57.1;trnaoffset=0;pbsoffset=1;edist=1
seq3	LTRdigest	protein_match	4960527	4960806	6.8e-20	+	.	Parent=LTR_retrotransposon322;reading_frame=1;name=Retrotrans_gag
seq3	LTRharvest	long_terminal_repeat	4967795	4969598	.	+	.	Parent=LTR_retrotransposon322
seq3	LTRharvest	target_site_duplication	4969599	4969602	.	+	.	Parent=repeat_region322
###
seq3	LTRharvest	repeat_region	5127097	5135157	.	-	.	ID=repeat_region323
seq3	LTRharvest	target_site_duplication	5127097	5127100	.	-	.	Parent=repeat_region323
seq3	LTRharvest	LTR_retrotransposon	5127101	5135153	.	-	.	ID=LTR_retrotransposon323;Parent=repeat_region323;ltr_similarity=97.07;seq_number=3
seq3	LTRharvest	long_terminal_repeat	5127101	5128258	.	-	.	Parent=LTR_retrotransposon323
seq3	LTRdigest	protein_match	5129855	5130182	4.1e-17	-	.	Parent=LTR_retrotransposon323;reading_frame=0;name=rve
seq3	LTRdigest	protein_match	5131294	5131771	3.8e-27	-	.	Parent=LTR_retrotransposon323;reading_frame=1;name=RVT_1
seq3	LTRdigest	protein_match	5133011	5133188	8.8e-10	-	.	Parent=LTR_retrotransposon323;reading_frame=0;name=Retrotrans_gag
seq3	LTRharvest	long_terminal_repeat	5133993	5135153	.	-	.	Parent=LTR_retrotransposon323
seq3	LTRharvest	target_site_duplication	5135154	5135157	.	-	.	Parent=repeat_region323
###
seq3	LTRharvest	repeat_region	5291917	5297003	.	+	.	ID=repeat_region324
seq3	LTRharvest	target_site_duplication	5291917	5291920	.	+	.	Parent=repeat_region324
seq3	LTRharvest	LTR_retrotransposon	5291921	5296999	.	+	.	ID=LTR_retrotransposon324;Parent=repeat_region324;ltr_similarity=78.32;seq_number=3
seq3	LTRharvest	long_terminal_repeat	5291921	5292146	.	+	.	Parent=LTR_retrotransposon324
seq3	LTRdigest	RR_tract	5296788	5296796	.	+	.	Parent=LTR_retrotransposon324
seq3	LTRharvest	long_terminal_repeat	5296798	5296999	.	+	.	Parent=LTR_retrotransposon324
seq3	LTRharvest	target_site_duplication	5297000	5297003	.	+	.	Parent=repeat_region324
###
seq3	LTRharvest	repeat_region	5591436	5596429	.	+	.	ID=repeat_region325
seq3	LTRharvest	target_site_duplication	5591436	5591439	.	+	.	Parent=repeat_region325
seq3	LTRharvest	LTR_retrotransposon	5591440	5596425	.	+	.	ID=LTR_retrotransposon325;Parent=repeat_region325;ltr_similarity=90.96;seq_number=3
seq3	LTRharvest	long_terminal_repeat	5591440	5591627	.	+	.	Parent=LTR_retrotransposon325
seq3	LTRdigest	protein_match	5592022	5592211	5.7e-10	+	.	Parent=LTR_retrotransposon325;reading_frame=0;name=Retrotrans_gag
seq3	LTRdigest	protein_match	5593480	5593753	7.8e-15	+	.	Parent=LTR_retrotransposon325;reading_frame=0;name=rve
seq3	LTRdigest	RR_tract	5596236	5596244	.	+	.	Parent=LTR_retrotransposon325
seq3	LTRharvest	long_terminal_repeat	5596243	5596425	.	+	.	Parent=LTR_retrotransposon325
seq3	LTRharvest	target_site_duplication	5596426	5596429	.	+	.	Parent=repeat_region325
###
seq3	LTRharvest	repeat_region	5822421	5827305	.	+	.	ID=repeat_region326
seq3	LTRharvest	target_site_duplication	5822421	5822425	.	+	.	Parent=repeat_region326
seq3	LTRharvest	LTR_retrotransposon	5822426	5827300	.	+	.	ID=LTR_retrotransposon326;Parent=repeat_region326;ltr_similarity=99.26;seq_number=3
seq3	LTRharvest	long_terminal_repeat	5822426	5822560	.	+	.	Parent=LTR_retrotransposon326
seq3	LTRdigest	protein_match	5823037	5823277	1e-08	+	.	Parent=LTR_retrotransposon326;reading_frame=2;name=Retrotrans_gag
seq3	LTRdigest	protein_match	5824378	5824711	8.8e-21	+	.	Parent=LTR_retrotransposon326;reading_frame=2;name=rve
seq3	LTRdigest	RR_tract	5827157	5827165	.	+	.	Parent=LTR_retrotransposon326
seq3	LTRharvest	long_terminal_repeat	5827166	5827300	.	+	.	Parent=LTR_retrotransposon326
seq3	LTRharvest	target_site_duplication	5827301	5827305	.	+	.	Parent=repeat_region326
###
seq3	LTRharvest	repeat_region	5987004	5991996	.	+	.	ID=repeat_region327
seq3	LTRharvest	target_site_duplication	5987004	5987007	.	+	.	Parent=repeat_region327
seq3	LTRharvest	LTR_retrotransposon	5987008	5991992	.	+	.	ID=LTR_retrotransposon327;Parent=repeat_region327;ltr_similarity=95.71;seq_number=3
seq3	LTRharvest	long_terminal_repeat	5987008	5987396	.	+	.	Parent=LTR_retrotransposon327
seq3	LTRdigest	protein_match	5987731	5987944	7.8e-09	+	.	Parent=LTR_retrotransposon327;reading_frame=0;name=Retrotrans_gag
seq3	LTRdigest	protein_match	5988952	5989294	7.1e-25	+	.	Parent=LTR_retrotransposon327;reading_frame=0;name=rve
seq3	LTRdigest	RR_tract	5991588	5991596	.	+	.	Parent=LTR_retrotransposon327
seq3	LTRharvest	long_terminal_repeat	5991597	5991992	.	+	.	Parent=LTR_retrotransposon327
seq3	LTRharvest	target_site_duplication	5991993	5991996	.	+	.	Parent=repeat_region327
###
seq3	LTRharvest	repeat_region	6588721	6593813	.	+	.	ID=repeat_region328
seq3	LTRharvest	target_site_duplication	6588721	6588725	.	+	.	Parent=repeat_region328
seq3	LTRharvest	LTR_retrotransposon	6588726	6593808	.	+	.	ID=LTR_retrotransposon328;Parent=repeat_region328;ltr_similarity=98.93;seq_number=3
seq3	LTRharvest	long_terminal_repeat	6588726	6589098	.	+	.	Parent=LTR_retrotransposon328
seq3	LTRdigest	protein_match	6589429	6589654	2.7e-08	+	.	Parent=LTR_retrotransposon328;reading_frame=1;name=Retrotrans_gag
seq3	LTRdigest	protein_match	6590668	6591016	9.8e-24	+	.	Parent=LTR_retrotransposon328;reading_frame=1;name=rve
seq3	LTRharvest	long_terminal_repeat	6593436	6593808	.	+	.	Parent=LTR_retrotransposon328
seq3	LTRharvest	target_site_duplication	6593809	6593813	.	+	.	Parent=repeat_region328
###
seq3	LTRharvest	repeat_region	6594132	6598639	.	+	.	ID=repeat_region329
seq3	LTRharvest	target_site_duplication	6594132	6594135	.	+	.	Parent=repeat_region329
seq3	LTRharvest	LTR_retrotransposon	6594136	6598635	.	+	.	ID=LTR_retrotransposon329;Parent=repeat_region329;ltr_similarity=91.34;seq_number=3
seq3	LTRharvest	long_terminal_repeat	6594136	6594412	.	+	.	Parent=LTR_retrotransposon329
seq3	LTRdigest	RR_tract	6598364	6598372	.	+	.	Parent=LTR_retrotransposon329
seq3	LTRharvest	long_terminal_repeat	6598364	6598635	.	+	.	Parent=LTR_retrotransposon329
seq3	LTRharvest	target_site_duplication	6598636	6598639	.	+	.	Parent=repeat_region329
###
seq3	LTRharvest	repeat_region	6659024	6672590	.	+	.	ID=repeat_region330
seq3	LTRharvest	target_site_duplication	6659024	6659027	.	+	.	Parent=repeat_region330
seq3	LTRharvest	LTR_retrotransposon	6659028	6672586	.	+	.	ID=LTR_retrotransposon330;Parent=repeat_region330;ltr_similarity=86.64;seq_number=3
seq3	LTRharvest	long_terminal_repeat	6659028	6659272	.	+	.	Parent=LTR_retrotransposon330
seq3	LTRdigest	RR_tract	6672298	6672305	.	+	.	Parent=LTR_retrotransposon330
seq3	LTRharvest	long_terminal_repeat	6672325	6672586	.	+	.	Parent=LTR_retrotransposon330
seq3	LTRharvest	target_site_duplication	6672587	6672590	.	+	.	Parent=repeat_region330
###
seq3	LTRharvest	repeat_region	6723343	6728795	.	+	.	ID=repeat_region331
seq3	LTRharvest	target_site_duplication	6723343	6723346	.	+	.	Parent=repeat_region331
seq3	LTRharvest	LTR_retrotransposon	6723347	6728791	.	+	.	ID=LTR_retrotransposon331;Parent=repeat_region331;ltr_similarity=96.63;seq_number=3
seq3	LTRharvest	long_terminal_repeat	6723347	6723554	.	+	.	Parent=LTR_retrotransposon331
seq3	LTRdigest	protein_match	6724092	6724443	1.6e-12	+	.	Parent=LTR_retrotransposon331;reading_frame=1;name=Retrotrans_gag
seq3	LTRdigest	protein_match	6725853	6726186	2.3e-21	+	.	Parent=LTR_retrotransposon331;reading_frame=1;name=rve
seq3	LTRdigest	RR_tract	6728576	6728583	.	+	.	Parent=LTR_retrotransposon331
seq3	LTRharvest	long_terminal_repeat	6728586	6728791	.	+	.	Parent=LTR_retrotransposon331
seq3	LTRharvest	target_site_duplication	6728792	6728795	.	+	.	Parent=repeat_region331
###
seq3	LTRharvest	repeat_region	6826678	6833263	.	?	.	ID=repeat_region332
seq3	LTRharvest	target_site_duplication	6826678	6826681	.	?	.	Parent=repeat_region332
seq3	LTRharvest	LTR_retrotransposon	6826682	6833259	.	?	.	ID=LTR_retrotransposon332;Parent=repeat_region332;ltr_similarity=86.99;seq_number=3
seq3	LTRharvest	long_terminal_repeat	6826682	6827248	.	?	.	Parent=LTR_retrotransposon332
seq3	LTRharvest	long_terminal_repeat	6832691	6833259	.	?	.	Parent=LTR_retrotransposon332
seq3	LTRharvest	target_site_duplication	6833260	6833263	.	?	.	Parent=repeat_region332
###
seq3	LTRharvest	repeat_region	6914657	6919603	.	-	.	ID=repeat_region333
seq3	LTRharvest	target_site_duplication	6914657	6914661	.	-	.	Parent=repeat_region333
seq3	LTRharvest	LTR_retrotransposon	6914662	6919598	.	-	.	ID=LTR_retrotransposon333;Parent=repeat_region333;ltr_similarity=96.30;seq_number=3
seq3	LTRharvest	long_terminal_repeat	6914662	6914877	.	-	.	Parent=LTR_retrotransposon333
seq3	LTRdigest	RR_tract	6914850	6914867	.	-	.	Parent=LTR_retrotransposon333
seq3	LTRdigest	protein_match	6917264	6917594	4.1e-16	-	.	Parent=LTR_retrotransposon333;reading_frame=0;name=rve
seq3	LTRdigest	protein_match	6918725	6919019	1.6e-09	-	.	Parent=LTR_retrotransposon333;reading_frame=0;name=Retrotrans_gag
seq3	LTRharvest	long_terminal_repeat	6919383	6919598	.	-	.	Parent=LTR_retrotransposon333
seq3	LTRharvest	target_site_duplication	6919599	6919603	.	-	.	Parent=repeat_region333
###
seq3	LTRharvest	repeat_region	7298368	7305111	.	?	.	ID=repeat_region334
seq3	LTRharvest	target_site_duplication	7298368	7298371	.	?	.	Parent=repeat_region334
seq3	LTRharvest	LTR_retrotransposon	7298372	7305107	.	?	.	ID=LTR_retrotransposon334;Parent=repeat_region334;ltr_similarity=88.89;seq_number=3
seq3	LTRharvest	long_terminal_repeat	7298372	7298488	.	?	.	Parent=LTR_retrotransposon334
seq3	LTRharvest	long_terminal_repeat	7304992	7305107	.	?	.	Parent=LTR_retrotransposon334
seq3	LTRharvest	target_site_duplication	7305108	7305111	.	?	.	Parent=repeat_region334
###
seq3	LTRharvest	repeat_region	7359457	7364596	.	-	.	ID=repeat_region335
seq3	LTRharvest	target_site_duplication	7359457	7359461	.	-	.	Parent=repeat_region335
seq3	LTRharvest	LTR_retrotransposon	7359462	7364591	.	-	.	ID=LTR_retrotransposon335;Parent=repeat_region335;ltr_similarity=98.77;seq_number=3
seq3	LTRharvest	long_terminal_repeat	7359462	7359623	.	-	.	Parent=LTR_retrotransposon335
seq3	LTRdigest	RR_tract	7359596	7359613	.	-	.	Parent=LTR_retrotransposon335
seq3	LTRharvest	long_terminal_repeat	7364430	7364591	.	-	.	Parent=LTR_retrotransposon335
seq3	LTRharvest	target_site_duplication	7364592	7364596	.	-	.	Parent=repeat_region335
###
seq3	LTRharvest	repeat_region	7522900	7527334	.	+	.	ID=repeat_region336
seq3	LTRharvest	target_site_duplication	7522900	7522903	.	+	.	Parent=repeat_region336
seq3	LTRharvest	LTR_retrotransposon	7522904	7527330	.	+	.	ID=LTR_retrotransposon336;Parent=repeat_region336;ltr_similarity=81.25;seq_number=3
seq3	LTRharvest	long_terminal_repeat	7522904	7523122	.	+	.	Parent=LTR_retrotransposon336
seq3	LTRdigest	RR_tract	7527076	7527083	.	+	.	Parent=LTR_retrotransposon336
seq3	LTRharvest	long_terminal_repeat	7527107	7527330	.	+	.	Parent=LTR_retrotransposon336
seq3	LTRharvest	target_site_duplication	7527331	7527334	.	+	.	Parent=repeat_region336
###
seq3	LTRharvest	repeat_region	7816821	7821797	.	-	.	ID=repeat_region337
seq3	LTRharvest	target_site_duplication	7816821	7816825	.	-	.	Parent=repeat_region337
seq3	LTRharvest	LTR_retrotransposon	7816826	7821792	.	-	.	ID=LTR_retrotransposon337;Parent=repeat_region337;ltr_similarity=97.53;seq_number=3
seq3	LTRharvest	long_terminal_repeat	7816826	7816987	.	-	.	Parent=LTR_retrotransposon337
seq3	LTRdigest	RR_tract	7816960	7816977	.	-	.	Parent=LTR_retrotransposon337
seq3	LTRharvest	long_terminal_repeat	7821631	7821792	.	-	.	Parent=LTR_retrotransposon337
seq3	LTRharvest	target_site_duplication	7821793	7821797	.	-	.	Parent=repeat_region337
###
seq3	LTRharvest	repeat_region	8086219	8092251	.	?	.	ID=repeat_region338
seq3	LTRharvest	target_site_duplication	8086219	8086222	.	?	.	Parent=repeat_region338
seq3	LTRharvest	LTR_retrotransposon	8086223	8092247	.	?	.	ID=LTR_retrotransposon338;Parent=repeat_region338;ltr_similarity=83.62;seq_number=3
seq3	LTRharvest	long_terminal_repeat	8086223	8086399	.	?	.	Parent=LTR_retrotransposon338
seq3	LTRharvest	long_terminal_repeat	8092074	8092247	.	?	.	Parent=LTR_retrotransposon338
seq3	LTRharvest	target_site_duplication	8092248	8092251	.	?	.	Parent=repeat_region338
###
seq3	LTRharvest	repeat_region	8202627	8206969	.	?	.	ID=repeat_region339
seq3	LTRharvest	target_site_duplication	8202627	8202630	.	?	.	Parent=repeat_region339
seq3	LTRharvest	LTR_retrotransposon	8202631	8206965	.	?	.	ID=LTR_retrotransposon339;Parent=repeat_region339;ltr_similarity=88.28;seq_number=3
seq3	LTRharvest	long_terminal_repeat	8202631	8202753	.	?	.	Parent=LTR_retrotransposon339
seq3	LTRharvest	long_terminal_repeat	8206838	8206965	.	?	.	Parent=LTR_retrotransposon339
seq3	LTRharvest	target_site_duplication	8206966	8206969	.	?	.	Parent=repeat_region339
###
seq3	LTRharvest	repeat_region	8313591	8319070	.	+	.	ID=repeat_region340
seq3	LTRharvest	target_site_duplication	8313591	8313594	.	+	.	Parent=repeat_region340
seq3	LTRharvest	LTR_retrotransposon	8313595	8319066	.	+	.	ID=LTR_retrotransposon340;Parent=repeat_region340;ltr_similarity=90.69;seq_number=3
seq3	LTRharvest	long_terminal_repeat	8313595	8313841	.	+	.	Parent=LTR_retrotransposon340
seq3	LTRdigest	protein_match	8314369	8314603	2.4e-09	+	.	Parent=LTR_retrotransposon340;reading_frame=0;name=Retrotrans_gag
seq3	LTRdigest	protein_match	8316094	8316427	1.4e-22	+	.	Parent=LTR_retrotransposon340;reading_frame=0;name=rve
seq3	LTRharvest	long_terminal_repeat	8318828	8319066	.	+	.	Parent=LTR_retrotransposon340
seq3	LTRdigest	RR_tract	8318837	8318846	.	+	.	Parent=LTR_retrotransposon340
seq3	LTRharvest	target_site_duplication	8319067	8319070	.	+	.	Parent=repeat_region340
###
seq3	LTRharvest	repeat_region	8589983	8597168	.	-	.	ID=repeat_region341
seq3	LTRharvest	target_site_duplication	8589983	8589986	.	-	.	Parent=repeat_region341
seq3	LTRharvest	LTR_retrotransposon	8589987	8597164	.	-	.	ID=LTR_retrotransposon341;Parent=repeat_region341;ltr_similarity=87.27;seq_number=3
seq3	LTRharvest	long_terminal_repeat	8589987	8590096	.	-	.	Parent=LTR_retrotransposon341
seq3	LTRdigest	RR_tract	8590071	8590079	.	-	.	Parent=LTR_retrotransposon341
seq3	LTRharvest	long_terminal_repeat	8597063	8597164	.	-	.	Parent=LTR_retrotransposon341
seq3	LTRharvest	target_site_duplication	8597165	8597168	.	-	.	Parent=repeat_region341
###
seq3	LTRharvest	repeat_region	8852909	8857294	.	?	.	ID=repeat_region342
seq3	LTRharvest	target_site_duplication	8852909	8852912	.	?	.	Parent=repeat_region342
seq3	LTRharvest	LTR_retrotransposon	8852913	8857290	.	?	.	ID=LTR_retrotransposon342;Parent=repeat_region342;ltr_similarity=78.34;seq_number=3
seq3	LTRharvest	long_terminal_repeat	8852913	8853062	.	?	.	Parent=LTR_retrotransposon342
seq3	LTRharvest	long_terminal_repeat	8857134	8857290	.	?	.	Parent=LTR_retrotransposon342
seq3	LTRharvest	target_site_duplication	8857291	8857294	.	?	.	Parent=repeat_region342
###
seq3	LTRharvest	repeat_region	9163505	9172992	.	-	.	ID=repeat_region343
seq3	LTRharvest	target_site_duplication	9163505	9163508	.	-	.	Parent=repeat_region343
seq3	LTRharvest	LTR_retrotransposon	9163509	9172988	.	-	.	ID=LTR_retrotransposon343;Parent=repeat_region343;ltr_similarity=88.69;seq_number=3
seq3	LTRharvest	long_terminal_repeat	9163509	9163729	.	-	.	Parent=LTR_retrotransposon343
seq3	LTRdigest	RR_tract	9163734	9163749	.	-	.	Parent=LTR_retrotransposon343
seq3	LTRharvest	long_terminal_repeat	9172779	9172988	.	-	.	Parent=LTR_retrotransposon343
seq3	LTRharvest	target_site_duplication	9172989	9172992	.	-	.	Parent=repeat_region343
###
seq3	LTRharvest	repeat_region	9182948	9188019	.	?	.	ID=repeat_region344
seq3	LTRharvest	target_site_duplication	9182948	9182951	.	?	.	Parent=repeat_region344
seq3	LTRharvest	LTR_retrotransposon	9182952	9188015	.	?	.	ID=LTR_retrotransposon344;Parent=repeat_region344;ltr_similarity=95.18;seq_number=3
seq3	LTRharvest	long_terminal_repeat	9182952	9183455	.	?	.	Parent=LTR_retrotransposon344
seq3	LTRharvest	long_terminal_repeat	9187497	9188015	.	?	.	Parent=LTR_retrotransposon344
seq3	LTRharvest	target_site_duplication	9188016	9188019	.	?	.	Parent=repeat_region344
###
seq3	LTRharvest	repeat_region	9570494	9575608	.	+	.	ID=repeat_region345
seq3	LTRharvest	target_site_duplication	9570494	9570497	.	+	.	Parent=repeat_region345
seq3	LTRharvest	LTR_retrotransposon	9570498	9575604	.	+	.	ID=LTR_retrotransposon345;Parent=repeat_region345;ltr_similarity=93.46;seq_number=3
seq3	LTRharvest	long_terminal_repeat	9570498	9570646	.	+	.	Parent=LTR_retrotransposon345
seq3	LTRdigest	RR_tract	9575446	9575454	.	+	.	Parent=LTR_retrotransposon345
seq3	LTRharvest	long_terminal_repeat	9575452	9575604	.	+	.	Parent=LTR_retrotransposon345
seq3	LTRharvest	target_site_duplication	9575605	9575608	.	+	.	Parent=repeat_region345
###
seq3	LTRharvest	repeat_region	9732601	9737735	.	-	.	ID=repeat_region346
seq3	LTRharvest	target_site_duplication	9732601	9732604	.	-	.	Parent=repeat_region346
seq3	LTRharvest	LTR_retrotransposon	9732605	9737731	.	-	.	ID=LTR_retrotransposon346;Parent=repeat_region346;ltr_similarity=90.73;seq_number=3
seq3	LTRharvest	long_terminal_repeat	9732605	9732809	.	-	.	Parent=LTR_retrotransposon346
seq3	LTRdigest	RR_tract	9732790	9732800	.	-	.	Parent=LTR_retrotransposon346
seq3	LTRdigest	protein_match	9735042	9735372	4.9e-21	-	.	Parent=LTR_retrotransposon346;reading_frame=1;name=rve
seq3	LTRdigest	protein_match	9736587	9736917	1.6e-16	-	.	Parent=LTR_retrotransposon346;reading_frame=1;name=Retrotrans_gag
seq3	LTRharvest	long_terminal_repeat	9737538	9737731	.	-	.	Parent=LTR_retrotransposon346
seq3	LTRharvest	target_site_duplication	9737732	9737735	.	-	.	Parent=repeat_region346
###
seq3	LTRharvest	repeat_region	9908985	9914050	.	+	.	ID=repeat_region347
seq3	LTRharvest	target_site_duplication	9908985	9908988	.	+	.	Parent=repeat_region347
seq3	LTRharvest	LTR_retrotransposon	9908989	9914046	.	+	.	ID=LTR_retrotransposon347;Parent=repeat_region347;ltr_similarity=97.04;seq_number=3
seq3	LTRharvest	long_terminal_repeat	9908989	9909157	.	+	.	Parent=LTR_retrotransposon347
seq3	LTRharvest	long_terminal_repeat	9913880	9914046	.	+	.	Parent=LTR_retrotransposon347
seq3	LTRdigest	RR_tract	9913896	9913907	.	+	.	Parent=LTR_retrotransposon347
seq3	LTRharvest	target_site_duplication	9914047	9914050	.	+	.	Parent=repeat_region347
###
seq3	LTRharvest	repeat_region	9950611	9958246	.	+	.	ID=repeat_region348
seq3	LTRharvest	target_site_duplication	9950611	9950614	.	+	.	Parent=repeat_region348
seq3	LTRharvest	LTR_retrotransposon	9950615	9958242	.	+	.	ID=LTR_retrotransposon348;Parent=repeat_region348;ltr_similarity=84.00;seq_number=3
seq3	LTRharvest	long_terminal_repeat	9950615	9950753	.	+	.	Parent=LTR_retrotransposon348
seq3	LTRdigest	RR_tract	9958066	9958075	.	+	.	Parent=LTR_retrotransposon348
seq3	LTRharvest	long_terminal_repeat	9958093	9958242	.	+	.	Parent=LTR_retrotransposon348
seq3	LTRharvest	target_site_duplication	9958243	9958246	.	+	.	Parent=repeat_region348
###
seq3	LTRharvest	repeat_region	10899523	10904697	.	-	.	ID=repeat_region349
seq3	LTRharvest	target_site_duplication	10899523	10899526	.	-	.	Parent=repeat_region349
seq3	LTRharvest	LTR_retrotransposon	10899527	10904693	.	-	.	ID=LTR_retrotransposon349;Parent=repeat_region349;ltr_similarity=91.81;seq_number=3
seq3	LTRharvest	long_terminal_repeat	10899527	10899697	.	-	.	Parent=LTR_retrotransposon349
seq3	LTRdigest	RR_tract	10899670	10899679	.	-	.	Parent=LTR_retrotransposon349
seq3	LTRharvest	long_terminal_repeat	10904531	10904693	.	-	.	Parent=LTR_retrotransposon349
seq3	LTRharvest	target_site_duplication	10904694	10904697	.	-	.	Parent=repeat_region349
###
seq3	LTRharvest	repeat_region	10992991	10998063	.	+	.	ID=repeat_region350
seq3	LTRharvest	target_site_duplication	10992991	10992995	.	+	.	Parent=repeat_region350
seq3	LTRharvest	LTR_retrotransposon	10992996	10998058	.	+	.	ID=LTR_retrotransposon350;Parent=repeat_region350;ltr_similarity=98.43;seq_number=3
seq3	LTRharvest	long_terminal_repeat	10992996	10993377	.	+	.	Parent=LTR_retrotransposon350
seq3	LTRdigest	primer_binding_site	10993381	10993391	11	+	.	Parent=LTR_retrotransposon350;trna=Arabidopsis_thaliana_tRNA-Met-CAT-1-1 (chr1.trna166-MetCAT) chr1:25941164-25941235 (+) Met (CAT) 72 bp Sc: 66.0;trnaoffset=0;pbsoffset=3;edist=0
seq3	LTRdigest	protein_match	10994945	10995290	9.9e-24	+	.	Parent=LTR_retrotransposon350;reading_frame=2;name=rve
seq3	LTRharvest	long_terminal_repeat	10997677	10998058	.	+	.	Parent=LTR_retrotransposon350
seq3	LTRharvest	target_site_duplication	10998059	10998063	.	+	.	Parent=repeat_region350
###
seq3	LTRharvest	repeat_region	11040510	11046719	.	+	.	ID=repeat_region351
seq3	LTRharvest	target_site_duplication	11040510	11040513	.	+	.	Parent=repeat_region351
seq3	LTRharvest	LTR_retrotransposon	11040514	11046715	.	+	.	ID=LTR_retrotransposon351;Parent=repeat_region351;ltr_similarity=94.56;seq_number=3
seq3	LTRharvest	long_terminal_repeat	11040514	11040968	.	+	.	Parent=LTR_retrotransposon351
seq3	LTRdigest	protein_match	11045858	11046230	1.6e-21	+	.	Parent=LTR_retrotransposon351;reading_frame=1;name=RVT_1
seq3	LTRdigest	RR_tract	11046207	11046218	.	+	.	Parent=LTR_retrotransposon351
seq3	LTRharvest	long_terminal_repeat	11046238	11046715	.	+	.	Parent=LTR_retrotransposon351
seq3	LTRharvest	target_site_duplication	11046716	11046719	.	+	.	Parent=repeat_region351
###
seq3	LTRharvest	repeat_region	11206537	11211223	.	-	.	ID=repeat_region352
seq3	LTRharvest	target_site_duplication	11206537	11206540	.	-	.	Parent=repeat_region352
seq3	LTRharvest	LTR_retrotransposon	11206541	11211219	.	-	.	ID=LTR_retrotransposon352;Parent=repeat_region352;ltr_similarity=96.02;seq_number=3
seq3	LTRharvest	long_terminal_repeat	11206541	11206791	.	-	.	Parent=LTR_retrotransposon352
seq3	LTRdigest	primer_binding_site	11210959	11210973	15	-	.	Parent=LTR_retrotransposon352;trna=Arabidopsis_thaliana_tRNA-Arg-CCT-1-1 (chr1.trna72-ArgCCT) chr1:18387802-18387874 (+) Arg (CCT) 73 bp Sc: 77.0;trnaoffset=0;pbsoffset=2;edist=0
seq3	LTRharvest	long_terminal_repeat	11210976	11211219	.	-	.	Parent=LTR_retrotransposon352
seq3	LTRharvest	target_site_duplication	11211220	11211223	.	-	.	Parent=repeat_region352
###
seq3	LTRharvest	repeat_region	11481820	11486757	.	?	.	ID=repeat_region353
seq3	LTRharvest	target_site_duplication	11481820	11481823	.	?	.	Parent=repeat_region353
seq3	LTRharvest	LTR_retrotransposon	11481824	11486753	.	?	.	ID=LTR_retrotransposon353;Parent=repeat_region353;ltr_similarity=86.05;seq_number=3
seq3	LTRharvest	long_terminal_repeat	11481824	11481995	.	?	.	Parent=LTR_retrotransposon353
seq3	LTRharvest	long_terminal_repeat	11486582	11486753	.	?	.	Parent=LTR_retrotransposon353
seq3	LTRharvest	target_site_duplication	11486754	11486757	.	?	.	Parent=repeat_region353
###
seq3	LTRharvest	repeat_region	11703293	11707628	.	-	.	ID=repeat_region354
seq3	LTRharvest	target_site_duplication	11703293	11703298	.	-	.	Parent=repeat_region354
seq3	LTRharvest	LTR_retrotransposon	11703299	11707622	.	-	.	ID=LTR_retrotransposon354;Parent=repeat_region354;ltr_similarity=87.63;seq_number=3
seq3	LTRharvest	long_terminal_repeat	11703299	11703597	.	-	.	Parent=LTR_retrotransposon354
seq3	LTRdigest	RR_tract	11703604	11703614	.	-	.	Parent=LTR_retrotransposon354
seq3	LTRharvest	long_terminal_repeat	11707331	11707622	.	-	.	Parent=LTR_retrotransposon354
seq3	LTRharvest	target_site_duplication	11707623	11707628	.	-	.	Parent=repeat_region354
###
seq3	LTRharvest	repeat_region	11734518	11739045	.	?	.	ID=repeat_region355
seq3	LTRharvest	target_site_duplication	11734518	11734521	.	?	.	Parent=repeat_region355
seq3	LTRharvest	LTR_retrotransposon	11734522	11739041	.	?	.	ID=LTR_retrotransposon355;Parent=repeat_region355;ltr_similarity=82.68;seq_number=3
seq3	LTRharvest	long_terminal_repeat	11734522	11734775	.	?	.	Parent=LTR_retrotransposon355
seq3	LTRharvest	long_terminal_repeat	11738796	11739041	.	?	.	Parent=LTR_retrotransposon355
seq3	LTRharvest	target_site_duplication	11739042	11739045	.	?	.	Parent=repeat_region355
###
seq3	LTRharvest	repeat_region	12211780	12218173	.	-	.	ID=repeat_region356
seq3	LTRharvest	target_site_duplication	12211780	12211783	.	-	.	Parent=repeat_region356
seq3	LTRharvest	LTR_retrotransposon	12211784	12218169	.	-	.	ID=LTR_retrotransposon356;Parent=repeat_region356;ltr_similarity=81.42;seq_number=3
seq3	LTRharvest	long_terminal_repeat	12211784	12211896	.	-	.	Parent=LTR_retrotransposon356
seq3	LTRdigest	RR_tract	12211884	12211895	.	-	.	Parent=LTR_retrotransposon356
seq3	LTRharvest	long_terminal_repeat	12218069	12218169	.	-	.	Parent=LTR_retrotransposon356
seq3	LTRharvest	target_site_duplication	12218170	12218173	.	-	.	Parent=repeat_region356
###
seq3	LTRharvest	repeat_region	13336298	13341648	.	-	.	ID=repeat_region357
seq3	LTRharvest	target_site_duplication	13336298	13336301	.	-	.	Parent=repeat_region357
seq3	LTRharvest	LTR_retrotransposon	13336302	13341644	.	-	.	ID=LTR_retrotransposon357;Parent=repeat_region357;ltr_similarity=89.23;seq_number=3
seq3	LTRharvest	long_terminal_repeat	13336302	13336496	.	-	.	Parent=LTR_retrotransposon357
seq3	LTRdigest	RR_tract	13336478	13336486	.	-	.	Parent=LTR_retrotransposon357
seq3	LTRharvest	long_terminal_repeat	13341458	13341644	.	-	.	Parent=LTR_retrotransposon357
seq3	LTRharvest	target_site_duplication	13341645	13341648	.	-	.	Parent=repeat_region357
###
seq3	LTRharvest	repeat_region	14258820	14263835	.	+	.	ID=repeat_region358
seq3	LTRharvest	target_site_duplication	14258820	14258824	.	+	.	Parent=repeat_region358
seq3	LTRharvest	LTR_retrotransposon	14258825	14263830	.	+	.	ID=LTR_retrotransposon358;Parent=repeat_region358;ltr_similarity=99.20;seq_number=3
seq3	LTRharvest	long_terminal_repeat	14258825	14259197	.	+	.	Parent=LTR_retrotransposon358
seq3	LTRdigest	protein_match	14259535	14259745	1.5e-06	+	.	Parent=LTR_retrotransposon358;reading_frame=2;name=Retrotrans_gag
seq3	LTRdigest	protein_match	14260727	14261066	9.1e-23	+	.	Parent=LTR_retrotransposon358;reading_frame=0;name=rve
seq3	LTRharvest	long_terminal_repeat	14263458	14263830	.	+	.	Parent=LTR_retrotransposon358
seq3	LTRharvest	target_site_duplication	14263831	14263835	.	+	.	Parent=repeat_region358
###
seq3	LTRharvest	repeat_region	14503002	14512027	.	?	.	ID=repeat_region359
seq3	LTRharvest	target_site_duplication	14503002	14503005	.	?	.	Parent=repeat_region359
seq3	LTRharvest	LTR_retrotransposon	14503006	14512023	.	?	.	ID=LTR_retrotransposon359;Parent=repeat_region359;ltr_similarity=92.02;seq_number=3
seq3	LTRharvest	long_terminal_repeat	14503006	14503242	.	?	.	Parent=LTR_retrotransposon359
seq3	LTRharvest	long_terminal_repeat	14511786	14512023	.	?	.	Parent=LTR_retrotransposon359
seq3	LTRharvest	target_site_duplication	14512024	14512027	.	?	.	Parent=repeat_region359
###
seq3	LTRharvest	repeat_region	14684001	14688755	.	+	.	ID=repeat_region360
seq3	LTRharvest	target_site_duplication	14684001	14684004	.	+	.	Parent=repeat_region360
seq3	LTRharvest	LTR_retrotransposon	14684005	14688751	.	+	.	ID=LTR_retrotransposon360;Parent=repeat_region360;ltr_similarity=84.38;seq_number=3
seq3	LTRharvest	long_terminal_repeat	14684005	14684260	.	+	.	Parent=LTR_retrotransposon360
seq3	LTRdigest	RR_tract	14688470	14688486	.	+	.	Parent=LTR_retrotransposon360
seq3	LTRharvest	long_terminal_repeat	14688501	14688751	.	+	.	Parent=LTR_retrotransposon360
seq3	LTRharvest	target_site_duplication	14688752	14688755	.	+	.	Parent=repeat_region360
###
seq3	LTRharvest	repeat_region	15027810	15033131	.	?	.	ID=repeat_region361
seq3	LTRharvest	target_site_duplication	15027810	15027813	.	?	.	Parent=repeat_region361
seq3	LTRharvest	LTR_retrotransposon	15027814	15033127	.	?	.	ID=LTR_retrotransposon361;Parent=repeat_region361;ltr_similarity=90.06;seq_number=3
seq3	LTRharvest	long_terminal_repeat	15027814	15028114	.	?	.	Parent=LTR_retrotransposon361
seq3	LTRharvest	long_terminal_repeat	15032816	15033127	.	?	.	Parent=LTR_retrotransposon361
seq3	LTRharvest	target_site_duplication	15033128	15033131	.	?	.	Parent=repeat_region361
###
seq3	LTRharvest	repeat_region	15551896	15565734	.	-	.	ID=repeat_region362
seq3	LTRharvest	target_site_duplication	15551896	15551900	.	-	.	Parent=repeat_region362
seq3	LTRharvest	LTR_retrotransposon	15551901	15565729	.	-	.	ID=LTR_retrotransposon362;Parent=repeat_region362;ltr_similarity=97.34;seq_number=3
seq3	LTRharvest	long_terminal_repeat	15551901	15552088	.	-	.	Parent=LTR_retrotransposon362
seq3	LTRdigest	protein_match	15561380	15561653	9.8e-17	-	.	Parent=LTR_retrotransposon362;reading_frame=2;name=Retrotrans_gag
seq3	LTRdigest	protein_match	15563901	15564138	7.3e-07	-	.	Parent=LTR_retrotransposon362;reading_frame=1;name=RNase_H
seq3	LTRharvest	long_terminal_repeat	15565544	15565729	.	-	.	Parent=LTR_retrotransposon362
seq3	LTRharvest	target_site_duplication	15565730	15565734	.	-	.	Parent=repeat_region362
###
seq3	LTRharvest	repeat_region	15840423	15844703	.	?	.	ID=repeat_region363
seq3	LTRharvest	target_site_duplication	15840423	15840426	.	?	.	Parent=repeat_region363
seq3	LTRharvest	LTR_retrotransposon	15840427	15844699	.	?	.	ID=LTR_retrotransposon363;Parent=repeat_region363;ltr_similarity=86.30;seq_number=3
seq3	LTRharvest	long_terminal_repeat	15840427	15840571	.	?	.	Parent=LTR_retrotransposon363
seq3	LTRharvest	long_terminal_repeat	15844554	15844699	.	?	.	Parent=LTR_retrotransposon363
seq3	LTRharvest	target_site_duplication	15844700	15844703	.	?	.	Parent=repeat_region363
###
seq3	LTRharvest	repeat_region	16320859	16325958	.	-	.	ID=repeat_region364
seq3	LTRharvest	target_site_duplication	16320859	16320862	.	-	.	Parent=repeat_region364
seq3	LTRharvest	LTR_retrotransposon	16320863	16325954	.	-	.	ID=LTR_retrotransposon364;Parent=repeat_region364;ltr_similarity=91.16;seq_number=3
seq3	LTRharvest	long_terminal_repeat	16320863	16321077	.	-	.	Parent=LTR_retrotransposon364
seq3	LTRdigest	RR_tract	16321078	16321095	.	-	.	Parent=LTR_retrotransposon364
seq3	LTRharvest	long_terminal_repeat	16325744	16325954	.	-	.	Parent=LTR_retrotransposon364
seq3	LTRharvest	target_site_duplication	16325955	16325958	.	-	.	Parent=repeat_region364
###
seq3	LTRharvest	repeat_region	17225295	17230937	.	?	.	ID=repeat_region365
seq3	LTRharvest	target_site_duplication	17225295	17225298	.	?	.	Parent=repeat_region365
seq3	LTRharvest	LTR_retrotransposon	17225299	17230933	.	?	.	ID=LTR_retrotransposon365;Parent=repeat_region365;ltr_similarity=83.54;seq_number=3
seq3	LTRharvest	long_terminal_repeat	17225299	17225454	.	?	.	Parent=LTR_retrotransposon365
seq3	LTRharvest	long_terminal_repeat	17230776	17230933	.	?	.	Parent=LTR_retrotransposon365
seq3	LTRharvest	target_site_duplication	17230934	17230937	.	?	.	Parent=repeat_region365
###
seq3	LTRharvest	repeat_region	17712147	17716972	.	+	.	ID=repeat_region366
seq3	LTRharvest	target_site_duplication	17712147	17712150	.	+	.	Parent=repeat_region366
seq3	LTRharvest	LTR_retrotransposon	17712151	17716968	.	+	.	ID=LTR_retrotransposon366;Parent=repeat_region366;ltr_similarity=94.34;seq_number=3
seq3	LTRharvest	long_terminal_repeat	17712151	17712468	.	+	.	Parent=LTR_retrotransposon366
seq3	LTRdigest	protein_match	17714112	17714454	5.1e-27	+	.	Parent=LTR_retrotransposon366;reading_frame=2;name=rve
seq3	LTRdigest	RR_tract	17716653	17716663	.	+	.	Parent=LTR_retrotransposon366
seq3	LTRharvest	long_terminal_repeat	17716664	17716968	.	+	.	Parent=LTR_retrotransposon366
seq3	LTRharvest	target_site_duplication	17716969	17716972	.	+	.	Parent=repeat_region366
###
seq3	LTRharvest	repeat_region	18381609	18390516	.	-	.	ID=repeat_region367
seq3	LTRharvest	target_site_duplication	18381609	18381612	.	-	.	Parent=repeat_region367
seq3	LTRharvest	LTR_retrotransposon	18381613	18390512	.	-	.	ID=LTR_retrotransposon367;Parent=repeat_region367;ltr_similarity=90.10;seq_number=3
seq3	LTRharvest	long_terminal_repeat	18381613	18381804	.	-	.	Parent=LTR_retrotransposon367
seq3	LTRdigest	RR_tract	18381821	18381835	.	-	.	Parent=LTR_retrotransposon367
seq3	LTRharvest	long_terminal_repeat	18390326	18390512	.	-	.	Parent=LTR_retrotransposon367
seq3	LTRharvest	target_site_duplication	18390513	18390516	.	-	.	Parent=repeat_region367
###
seq4	LTRharvest	repeat_region	64767	71204	.	-	.	ID=repeat_region368
seq4	LTRharvest	target_site_duplication	64767	64771	.	-	.	Parent=repeat_region368
seq4	LTRharvest	LTR_retrotransposon	64772	71199	.	-	.	ID=LTR_retrotransposon368;Parent=repeat_region368;ltr_similarity=99.70;seq_number=4
seq4	LTRharvest	long_terminal_repeat	64772	65108	.	-	.	Parent=LTR_retrotransposon368
seq4	LTRdigest	protein_match	67788	68121	4.4e-16	-	.	Parent=LTR_retrotransposon368;reading_frame=0;name=rve
seq4	LTRharvest	long_terminal_repeat	70863	71199	.	-	.	Parent=LTR_retrotransposon368
seq4	LTRharvest	target_site_duplication	71200	71204	.	-	.	Parent=repeat_region368
###
seq4	LTRharvest	repeat_region	211332	219093	.	-	.	ID=repeat_region369
seq4	LTRharvest	target_site_duplication	211332	211335	.	-	.	Parent=repeat_region369
seq4	LTRharvest	LTR_retrotransposon	211336	219089	.	-	.	ID=LTR_retrotransposon369;Parent=repeat_region369;ltr_similarity=84.98;seq_number=4
seq4	LTRharvest	long_terminal_repeat	211336	212169	.	-	.	Parent=LTR_retrotransposon369
seq4	LTRdigest	RR_tract	212179	212187	.	-	.	Parent=LTR_retrotransposon369
seq4	LTRharvest	long_terminal_repeat	218251	219089	.	-	.	Parent=LTR_retrotransposon369
seq4	LTRharvest	target_site_duplication	219090	219093	.	-	.	Parent=repeat_region369
###
seq4	LTRharvest	repeat_region	1331306	1337194	.	+	.	ID=repeat_region370
seq4	LTRharvest	target_site_duplication	1331306	1331309	.	+	.	Parent=repeat_region370
seq4	LTRharvest	LTR_retrotransposon	1331310	1337190	.	+	.	ID=LTR_retrotransposon370;Parent=repeat_region370;ltr_similarity=82.38;seq_number=4
seq4	LTRharvest	long_terminal_repeat	1331310	1331710	.	+	.	Parent=LTR_retrotransposon370
seq4	LTRdigest	RR_tract	1336772	1336783	.	+	.	Parent=LTR_retrotransposon370
seq4	LTRharvest	long_terminal_repeat	1336788	1337190	.	+	.	Parent=LTR_retrotransposon370
seq4	LTRharvest	target_site_duplication	1337191	1337194	.	+	.	Parent=repeat_region370
###
seq4	LTRharvest	repeat_region	1961363	1970369	.	?	.	ID=repeat_region371
seq4	LTRharvest	target_site_duplication	1961363	1961366	.	?	.	Parent=repeat_region371
seq4	LTRharvest	LTR_retrotransposon	1961367	1970365	.	?	.	ID=LTR_retrotransposon371;Parent=repeat_region371;ltr_similarity=89.24;seq_number=4
seq4	LTRharvest	long_terminal_repeat	1961367	1961649	.	?	.	Parent=LTR_retrotransposon371
seq4	LTRharvest	long_terminal_repeat	1970078	1970365	.	?	.	Parent=LTR_retrotransposon371
seq4	LTRharvest	target_site_duplication	1970366	1970369	.	?	.	Parent=repeat_region371
###
seq4	LTRharvest	repeat_region	2373770	2379815	.	+	.	ID=repeat_region372
seq4	LTRharvest	target_site_duplication	2373770	2373774	.	+	.	Parent=repeat_region372
seq4	LTRharvest	LTR_retrotransposon	2373775	2379810	.	+	.	ID=LTR_retrotransposon372;Parent=repeat_region372;ltr_similarity=85.47;seq_number=4
seq4	LTRharvest	long_terminal_repeat	2373775	2373946	.	+	.	Parent=LTR_retrotransposon372
seq4	LTRdigest	protein_match	2374775	2375453	5.61e-45	+	.	Parent=LTR_retrotransposon372;reading_frame=1;name=RVT_1
seq4	LTRharvest	long_terminal_repeat	2379643	2379810	.	+	.	Parent=LTR_retrotransposon372
seq4	LTRharvest	target_site_duplication	2379811	2379815	.	+	.	Parent=repeat_region372
###
seq4	LTRharvest	repeat_region	2380965	2405493	.	?	.	ID=repeat_region373
seq4	LTRharvest	target_site_duplication	2380965	2380968	.	?	.	Parent=repeat_region373
seq4	LTRharvest	LTR_retrotransposon	2380969	2405489	.	?	.	ID=LTR_retrotransposon373;Parent=repeat_region373;ltr_similarity=83.39;seq_number=4
seq4	LTRharvest	long_terminal_repeat	2380969	2381239	.	?	.	Parent=LTR_retrotransposon373
seq4	LTRharvest	long_terminal_repeat	2405219	2405489	.	?	.	Parent=LTR_retrotransposon373
seq4	LTRharvest	target_site_duplication	2405490	2405493	.	?	.	Parent=repeat_region373
###
seq4	LTRharvest	repeat_region	2510274	2515360	.	-	.	ID=repeat_region374
seq4	LTRharvest	target_site_duplication	2510274	2510277	.	-	.	Parent=repeat_region374
seq4	LTRharvest	LTR_retrotransposon	2510278	2515356	.	-	.	ID=LTR_retrotransposon374;Parent=repeat_region374;ltr_similarity=84.03;seq_number=4
seq4	LTRharvest	long_terminal_repeat	2510278	2510515	.	-	.	Parent=LTR_retrotransposon374
seq4	LTRdigest	RR_tract	2510488	2510501	.	-	.	Parent=LTR_retrotransposon374
seq4	LTRharvest	long_terminal_repeat	2515121	2515356	.	-	.	Parent=LTR_retrotransposon374
seq4	LTRharvest	target_site_duplication	2515357	2515360	.	-	.	Parent=repeat_region374
###
seq4	LTRharvest	repeat_region	3247642	3253026	.	+	.	ID=repeat_region375
seq4	LTRharvest	target_site_duplication	3247642	3247645	.	+	.	Parent=repeat_region375
seq4	LTRharvest	LTR_retrotransposon	3247646	3253022	.	+	.	ID=LTR_retrotransposon375;Parent=repeat_region375;ltr_similarity=95.48;seq_number=4
seq4	LTRharvest	long_terminal_repeat	3247646	3247844	.	+	.	Parent=LTR_retrotransposon375
seq4	LTRdigest	RR_tract	3252802	3252812	.	+	.	Parent=LTR_retrotransposon375
seq4	LTRharvest	long_terminal_repeat	3252833	3253022	.	+	.	Parent=LTR_retrotransposon375
seq4	LTRharvest	target_site_duplication	3253023	3253026	.	+	.	Parent=repeat_region375
###
seq4	LTRharvest	repeat_region	3904671	3909866	.	-	.	ID=repeat_region376
seq4	LTRharvest	target_site_duplication	3904671	3904674	.	-	.	Parent=repeat_region376
seq4	LTRharvest	LTR_retrotransposon	3904675	3909862	.	-	.	ID=LTR_retrotransposon376;Parent=repeat_region376;ltr_similarity=96.30;seq_number=4
seq4	LTRharvest	long_terminal_repeat	3904675	3904942	.	-	.	Parent=LTR_retrotransposon376
seq4	LTRdigest	protein_match	3905688	3906012	5.2e-15	-	.	Parent=LTR_retrotransposon376;reading_frame=1;name=rve
seq4	LTRdigest	protein_match	3907070	3907547	3.5e-27	-	.	Parent=LTR_retrotransposon376;reading_frame=2;name=RVT_1
seq4	LTRdigest	protein_match	3908780	3909056	2.9e-11	-	.	Parent=LTR_retrotransposon376;reading_frame=2;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	3909593	3909862	.	-	.	Parent=LTR_retrotransposon376
seq4	LTRharvest	target_site_duplication	3909863	3909866	.	-	.	Parent=repeat_region376
###
seq4	LTRharvest	repeat_region	4208078	4213089	.	-	.	ID=repeat_region377
seq4	LTRharvest	target_site_duplication	4208078	4208082	.	-	.	Parent=repeat_region377
seq4	LTRharvest	LTR_retrotransposon	4208083	4213084	.	-	.	ID=LTR_retrotransposon377;Parent=repeat_region377;ltr_similarity=100.00;seq_number=4
seq4	LTRharvest	long_terminal_repeat	4208083	4208545	.	-	.	Parent=LTR_retrotransposon377
seq4	LTRdigest	RR_tract	4208533	4208541	.	-	.	Parent=LTR_retrotransposon377
seq4	LTRdigest	protein_match	4210671	4211022	7e-28	-	.	Parent=LTR_retrotransposon377;reading_frame=1;name=rve
seq4	LTRharvest	long_terminal_repeat	4212622	4213084	.	-	.	Parent=LTR_retrotransposon377
seq4	LTRharvest	target_site_duplication	4213085	4213089	.	-	.	Parent=repeat_region377
###
seq4	LTRharvest	repeat_region	5603819	5608725	.	-	.	ID=repeat_region378
seq4	LTRharvest	target_site_duplication	5603819	5603822	.	-	.	Parent=repeat_region378
seq4	LTRharvest	LTR_retrotransposon	5603823	5608721	.	-	.	ID=LTR_retrotransposon378;Parent=repeat_region378;ltr_similarity=79.87;seq_number=4
seq4	LTRharvest	long_terminal_repeat	5603823	5604106	.	-	.	Parent=LTR_retrotransposon378
seq4	LTRdigest	RR_tract	5604106	5604113	.	-	.	Parent=LTR_retrotransposon378
seq4	LTRharvest	long_terminal_repeat	5608424	5608721	.	-	.	Parent=LTR_retrotransposon378
seq4	LTRharvest	target_site_duplication	5608722	5608725	.	-	.	Parent=repeat_region378
###
seq4	LTRharvest	repeat_region	6064593	6068751	.	?	.	ID=repeat_region379
seq4	LTRharvest	target_site_duplication	6064593	6064596	.	?	.	Parent=repeat_region379
seq4	LTRharvest	LTR_retrotransposon	6064597	6068747	.	?	.	ID=LTR_retrotransposon379;Parent=repeat_region379;ltr_similarity=80.80;seq_number=4
seq4	LTRharvest	long_terminal_repeat	6064597	6064709	.	?	.	Parent=LTR_retrotransposon379
seq4	LTRharvest	long_terminal_repeat	6068623	6068747	.	?	.	Parent=LTR_retrotransposon379
seq4	LTRharvest	target_site_duplication	6068748	6068751	.	?	.	Parent=repeat_region379
###
seq4	LTRharvest	repeat_region	6403053	6408058	.	-	.	ID=repeat_region380
seq4	LTRharvest	target_site_duplication	6403053	6403056	.	-	.	Parent=repeat_region380
seq4	LTRharvest	LTR_retrotransposon	6403057	6408054	.	-	.	ID=LTR_retrotransposon380;Parent=repeat_region380;ltr_similarity=93.40;seq_number=4
seq4	LTRharvest	long_terminal_repeat	6403057	6403268	.	-	.	Parent=LTR_retrotransposon380
seq4	LTRdigest	protein_match	6405523	6405850	2.6e-20	-	.	Parent=LTR_retrotransposon380;reading_frame=2;name=rve
seq4	LTRdigest	protein_match	6407041	6407383	6.3e-18	-	.	Parent=LTR_retrotransposon380;reading_frame=2;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	6407843	6408054	.	-	.	Parent=LTR_retrotransposon380
seq4	LTRharvest	target_site_duplication	6408055	6408058	.	-	.	Parent=repeat_region380
###
seq4	LTRharvest	repeat_region	6433625	6438781	.	-	.	ID=repeat_region381
seq4	LTRharvest	target_site_duplication	6433625	6433628	.	-	.	Parent=repeat_region381
seq4	LTRharvest	LTR_retrotransposon	6433629	6438777	.	-	.	ID=LTR_retrotransposon381;Parent=repeat_region381;ltr_similarity=99.24;seq_number=4
seq4	LTRharvest	long_terminal_repeat	6433629	6433759	.	-	.	Parent=LTR_retrotransposon381
seq4	LTRdigest	RR_tract	6433780	6433790	.	-	.	Parent=LTR_retrotransposon381
seq4	LTRdigest	protein_match	6436079	6436415	1.3e-16	-	.	Parent=LTR_retrotransposon381;reading_frame=1;name=rve
seq4	LTRdigest	protein_match	6437762	6438107	3.3e-13	-	.	Parent=LTR_retrotransposon381;reading_frame=1;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	6438646	6438777	.	-	.	Parent=LTR_retrotransposon381
seq4	LTRharvest	target_site_duplication	6438778	6438781	.	-	.	Parent=repeat_region381
###
seq4	LTRharvest	repeat_region	6468247	6472835	.	-	.	ID=repeat_region382
seq4	LTRharvest	target_site_duplication	6468247	6468250	.	-	.	Parent=repeat_region382
seq4	LTRharvest	LTR_retrotransposon	6468251	6472831	.	-	.	ID=LTR_retrotransposon382;Parent=repeat_region382;ltr_similarity=90.99;seq_number=4
seq4	LTRharvest	long_terminal_repeat	6468251	6468359	.	-	.	Parent=LTR_retrotransposon382
seq4	LTRdigest	RR_tract	6468339	6468348	.	-	.	Parent=LTR_retrotransposon382
seq4	LTRharvest	long_terminal_repeat	6472721	6472831	.	-	.	Parent=LTR_retrotransposon382
seq4	LTRharvest	target_site_duplication	6472832	6472835	.	-	.	Parent=repeat_region382
###
seq4	LTRharvest	repeat_region	7170322	7177339	.	?	.	ID=repeat_region383
seq4	LTRharvest	target_site_duplication	7170322	7170325	.	?	.	Parent=repeat_region383
seq4	LTRharvest	LTR_retrotransposon	7170326	7177335	.	?	.	ID=LTR_retrotransposon383;Parent=repeat_region383;ltr_similarity=88.51;seq_number=4
seq4	LTRharvest	long_terminal_repeat	7170326	7170647	.	?	.	Parent=LTR_retrotransposon383
seq4	LTRharvest	long_terminal_repeat	7177029	7177335	.	?	.	Parent=LTR_retrotransposon383
seq4	LTRharvest	target_site_duplication	7177336	7177339	.	?	.	Parent=repeat_region383
###
seq4	LTRharvest	repeat_region	7210790	7219568	.	-	.	ID=repeat_region384
seq4	LTRharvest	target_site_duplication	7210790	7210793	.	-	.	Parent=repeat_region384
seq4	LTRharvest	LTR_retrotransposon	7210794	7219564	.	-	.	ID=LTR_retrotransposon384;Parent=repeat_region384;ltr_similarity=85.02;seq_number=4
seq4	LTRharvest	long_terminal_repeat	7210794	7211000	.	-	.	Parent=LTR_retrotransposon384
seq4	LTRdigest	RR_tract	7210984	7210992	.	-	.	Parent=LTR_retrotransposon384
seq4	LTRharvest	long_terminal_repeat	7219370	7219564	.	-	.	Parent=LTR_retrotransposon384
seq4	LTRharvest	target_site_duplication	7219565	7219568	.	-	.	Parent=repeat_region384
###
seq4	LTRharvest	repeat_region	7505449	7511011	.	?	.	ID=repeat_region385
seq4	LTRharvest	target_site_duplication	7505449	7505452	.	?	.	Parent=repeat_region385
seq4	LTRharvest	LTR_retrotransposon	7505453	7511007	.	?	.	ID=LTR_retrotransposon385;Parent=repeat_region385;ltr_similarity=83.09;seq_number=4
seq4	LTRharvest	long_terminal_repeat	7505453	7505583	.	?	.	Parent=LTR_retrotransposon385
seq4	LTRharvest	long_terminal_repeat	7510872	7511007	.	?	.	Parent=LTR_retrotransposon385
seq4	LTRharvest	target_site_duplication	7511008	7511011	.	?	.	Parent=repeat_region385
###
seq4	LTRharvest	repeat_region	7511421	7516845	.	-	.	ID=repeat_region386
seq4	LTRharvest	target_site_duplication	7511421	7511424	.	-	.	Parent=repeat_region386
seq4	LTRharvest	LTR_retrotransposon	7511425	7516841	.	-	.	ID=LTR_retrotransposon386;Parent=repeat_region386;ltr_similarity=76.47;seq_number=4
seq4	LTRharvest	long_terminal_repeat	7511425	7511618	.	-	.	Parent=LTR_retrotransposon386
seq4	LTRdigest	primer_binding_site	7516628	7516638	10.2	-	.	Parent=LTR_retrotransposon386;trna=Arabidopsis_thaliana_tRNA-Gln-CTG-1-1 (chr4.trna5-GlnCTG) chr4:1501607-1501678 (+) Gln (CTG) 72 bp Sc: 70.4;trnaoffset=5;pbsoffset=1;edist=0
seq4	LTRharvest	long_terminal_repeat	7516638	7516841	.	-	.	Parent=LTR_retrotransposon386
seq4	LTRharvest	target_site_duplication	7516842	7516845	.	-	.	Parent=repeat_region386
###
seq4	LTRharvest	repeat_region	7820043	7826633	.	?	.	ID=repeat_region387
seq4	LTRharvest	target_site_duplication	7820043	7820046	.	?	.	Parent=repeat_region387
seq4	LTRharvest	LTR_retrotransposon	7820047	7826629	.	?	.	ID=LTR_retrotransposon387;Parent=repeat_region387;ltr_similarity=86.74;seq_number=4
seq4	LTRharvest	long_terminal_repeat	7820047	7820681	.	?	.	Parent=LTR_retrotransposon387
seq4	LTRharvest	long_terminal_repeat	7825989	7826629	.	?	.	Parent=LTR_retrotransposon387
seq4	LTRharvest	target_site_duplication	7826630	7826633	.	?	.	Parent=repeat_region387
###
seq4	LTRharvest	repeat_region	7858637	7864264	.	?	.	ID=repeat_region388
seq4	LTRharvest	target_site_duplication	7858637	7858640	.	?	.	Parent=repeat_region388
seq4	LTRharvest	LTR_retrotransposon	7858641	7864260	.	?	.	ID=LTR_retrotransposon388;Parent=repeat_region388;ltr_similarity=90.45;seq_number=4
seq4	LTRharvest	long_terminal_repeat	7858641	7859260	.	?	.	Parent=LTR_retrotransposon388
seq4	LTRharvest	long_terminal_repeat	7863633	7864260	.	?	.	Parent=LTR_retrotransposon388
seq4	LTRharvest	target_site_duplication	7864261	7864264	.	?	.	Parent=repeat_region388
###
seq4	LTRharvest	repeat_region	8204172	8218850	.	+	.	ID=repeat_region389
seq4	LTRharvest	target_site_duplication	8204172	8204175	.	+	.	Parent=repeat_region389
seq4	LTRharvest	LTR_retrotransposon	8204176	8218846	.	+	.	ID=LTR_retrotransposon389;Parent=repeat_region389;ltr_similarity=84.85;seq_number=4
seq4	LTRharvest	long_terminal_repeat	8204176	8204340	.	+	.	Parent=LTR_retrotransposon389
seq4	LTRdigest	primer_binding_site	8204346	8204356	2.18	+	.	Parent=LTR_retrotransposon389;trna=Arabidopsis_thaliana_tRNA-Ser-TGA-6-1 (chrCp.trna25-SerTGA) chrCp:35312-35403 (-) Ser (TGA) 92 bp Sc: 57.9;trnaoffset=1;pbsoffset=5;edist=1
seq4	LTRharvest	long_terminal_repeat	8218686	8218846	.	+	.	Parent=LTR_retrotransposon389
seq4	LTRharvest	target_site_duplication	8218847	8218850	.	+	.	Parent=repeat_region389
###
seq4	LTRharvest	repeat_region	8245438	8252562	.	?	.	ID=repeat_region390
seq4	LTRharvest	target_site_duplication	8245438	8245441	.	?	.	Parent=repeat_region390
seq4	LTRharvest	LTR_retrotransposon	8245442	8252558	.	?	.	ID=LTR_retrotransposon390;Parent=repeat_region390;ltr_similarity=72.73;seq_number=4
seq4	LTRharvest	long_terminal_repeat	8245442	8245650	.	?	.	Parent=LTR_retrotransposon390
seq4	LTRharvest	long_terminal_repeat	8252357	8252558	.	?	.	Parent=LTR_retrotransposon390
seq4	LTRharvest	target_site_duplication	8252559	8252562	.	?	.	Parent=repeat_region390
###
seq4	LTRharvest	repeat_region	8927992	8934333	.	+	.	ID=repeat_region391
seq4	LTRharvest	target_site_duplication	8927992	8927996	.	+	.	Parent=repeat_region391
seq4	LTRharvest	LTR_retrotransposon	8927997	8934328	.	+	.	ID=LTR_retrotransposon391;Parent=repeat_region391;ltr_similarity=98.22;seq_number=4
seq4	LTRharvest	long_terminal_repeat	8927997	8928333	.	+	.	Parent=LTR_retrotransposon391
seq4	LTRdigest	protein_match	8930980	8931313	1.7e-15	+	.	Parent=LTR_retrotransposon391;reading_frame=1;name=rve
seq4	LTRdigest	RR_tract	8933983	8933991	.	+	.	Parent=LTR_retrotransposon391
seq4	LTRharvest	long_terminal_repeat	8933992	8934328	.	+	.	Parent=LTR_retrotransposon391
seq4	LTRharvest	target_site_duplication	8934329	8934333	.	+	.	Parent=repeat_region391
###
seq4	LTRharvest	repeat_region	9181890	9189369	.	+	.	ID=repeat_region392
seq4	LTRharvest	target_site_duplication	9181890	9181893	.	+	.	Parent=repeat_region392
seq4	LTRharvest	LTR_retrotransposon	9181894	9189365	.	+	.	ID=LTR_retrotransposon392;Parent=repeat_region392;ltr_similarity=94.70;seq_number=4
seq4	LTRharvest	long_terminal_repeat	9181894	9182742	.	+	.	Parent=LTR_retrotransposon392
seq4	LTRdigest	protein_match	9183602	9183887	1e-27	+	.	Parent=LTR_retrotransposon392;reading_frame=1;name=Retrotrans_gag
seq4	LTRdigest	protein_match	9184808	9185285	2.4e-33	+	.	Parent=LTR_retrotransposon392;reading_frame=1;name=RVT_1
seq4	LTRdigest	protein_match	9186537	9186726	6.4e-08	+	.	Parent=LTR_retrotransposon392;reading_frame=2;name=rve
seq4	LTRdigest	RR_tract	9188510	9188526	.	+	.	Parent=LTR_retrotransposon392
seq4	LTRharvest	long_terminal_repeat	9188523	9189365	.	+	.	Parent=LTR_retrotransposon392
seq4	LTRharvest	target_site_duplication	9189366	9189369	.	+	.	Parent=repeat_region392
###
seq4	LTRharvest	repeat_region	9381690	9386626	.	-	.	ID=repeat_region393
seq4	LTRharvest	target_site_duplication	9381690	9381693	.	-	.	Parent=repeat_region393
seq4	LTRharvest	LTR_retrotransposon	9381694	9386622	.	-	.	ID=LTR_retrotransposon393;Parent=repeat_region393;ltr_similarity=96.55;seq_number=4
seq4	LTRharvest	long_terminal_repeat	9381694	9381866	.	-	.	Parent=LTR_retrotransposon393
seq4	LTRdigest	RR_tract	9381839	9381846	.	-	.	Parent=LTR_retrotransposon393
seq4	LTRdigest	primer_binding_site	9386434	9386444	2.75	-	.	Parent=LTR_retrotransposon393;trna=Arabidopsis_thaliana_tRNA-Tyr-GTA-6-1 (chr1.trna79-TyrGTA) chr1:21269122-21269206 (+) Tyr (GTA) 85 bp Sc: 71.2;trnaoffset=0;pbsoffset=4;edist=1
seq4	LTRharvest	long_terminal_repeat	9386449	9386622	.	-	.	Parent=LTR_retrotransposon393
seq4	LTRharvest	target_site_duplication	9386623	9386626	.	-	.	Parent=repeat_region393
###
seq4	LTRharvest	repeat_region	9949171	9954436	.	+	.	ID=repeat_region394
seq4	LTRharvest	target_site_duplication	9949171	9949174	.	+	.	Parent=repeat_region394
seq4	LTRharvest	LTR_retrotransposon	9949175	9954432	.	+	.	ID=LTR_retrotransposon394;Parent=repeat_region394;ltr_similarity=95.23;seq_number=4
seq4	LTRharvest	long_terminal_repeat	9949175	9949677	.	+	.	Parent=LTR_retrotransposon394
seq4	LTRdigest	primer_binding_site	9949676	9949686	11	+	.	Parent=LTR_retrotransposon394;trna=Arabidopsis_thaliana_tRNA-Met-CAT-1-1 (chr1.trna166-MetCAT) chr1:25941164-25941235 (+) Met (CAT) 72 bp Sc: 66.0;trnaoffset=0;pbsoffset=2;edist=0
seq4	LTRdigest	protein_match	9949956	9950220	2.4e-08	+	.	Parent=LTR_retrotransposon394;reading_frame=1;name=Retrotrans_gag
seq4	LTRdigest	protein_match	9951242	9951578	1.2e-22	+	.	Parent=LTR_retrotransposon394;reading_frame=0;name=rve
seq4	LTRharvest	long_terminal_repeat	9953947	9954432	.	+	.	Parent=LTR_retrotransposon394
seq4	LTRdigest	RR_tract	9953953	9953960	.	+	.	Parent=LTR_retrotransposon394
seq4	LTRharvest	target_site_duplication	9954433	9954436	.	+	.	Parent=repeat_region394
###
seq4	LTRharvest	repeat_region	10026365	10030637	.	?	.	ID=repeat_region395
seq4	LTRharvest	target_site_duplication	10026365	10026368	.	?	.	Parent=repeat_region395
seq4	LTRharvest	LTR_retrotransposon	10026369	10030633	.	?	.	ID=LTR_retrotransposon395;Parent=repeat_region395;ltr_similarity=74.40;seq_number=4
seq4	LTRharvest	long_terminal_repeat	10026369	10026536	.	?	.	Parent=LTR_retrotransposon395
seq4	LTRharvest	long_terminal_repeat	10030480	10030633	.	?	.	Parent=LTR_retrotransposon395
seq4	LTRharvest	target_site_duplication	10030634	10030637	.	?	.	Parent=repeat_region395
###
seq4	LTRharvest	repeat_region	10128748	10133868	.	+	.	ID=repeat_region396
seq4	LTRharvest	target_site_duplication	10128748	10128752	.	+	.	Parent=repeat_region396
seq4	LTRharvest	LTR_retrotransposon	10128753	10133863	.	+	.	ID=LTR_retrotransposon396;Parent=repeat_region396;ltr_similarity=95.83;seq_number=4
seq4	LTRharvest	long_terminal_repeat	10128753	10128917	.	+	.	Parent=LTR_retrotransposon396
seq4	LTRdigest	protein_match	10129342	10129639	4.4e-09	+	.	Parent=LTR_retrotransposon396;reading_frame=1;name=Retrotrans_gag
seq4	LTRdigest	protein_match	10130722	10131061	4e-19	+	.	Parent=LTR_retrotransposon396;reading_frame=1;name=rve
seq4	LTRdigest	RR_tract	10133687	10133695	.	+	.	Parent=LTR_retrotransposon396
seq4	LTRharvest	long_terminal_repeat	10133696	10133863	.	+	.	Parent=LTR_retrotransposon396
seq4	LTRharvest	target_site_duplication	10133864	10133868	.	+	.	Parent=repeat_region396
###
seq4	LTRharvest	repeat_region	10359348	10364278	.	-	.	ID=repeat_region397
seq4	LTRharvest	target_site_duplication	10359348	10359351	.	-	.	Parent=repeat_region397
seq4	LTRharvest	LTR_retrotransposon	10359352	10364274	.	-	.	ID=LTR_retrotransposon397;Parent=repeat_region397;ltr_similarity=85.40;seq_number=4
seq4	LTRharvest	long_terminal_repeat	10359352	10359485	.	-	.	Parent=LTR_retrotransposon397
seq4	LTRdigest	RR_tract	10359458	10359465	.	-	.	Parent=LTR_retrotransposon397
seq4	LTRdigest	protein_match	10362234	10362570	1e-18	-	.	Parent=LTR_retrotransposon397;reading_frame=0;name=rve
seq4	LTRdigest	protein_match	10363536	10363821	1e-06	-	.	Parent=LTR_retrotransposon397;reading_frame=0;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	10364138	10364274	.	-	.	Parent=LTR_retrotransposon397
seq4	LTRharvest	target_site_duplication	10364275	10364278	.	-	.	Parent=repeat_region397
###
seq4	LTRharvest	repeat_region	10638476	10643376	.	+	.	ID=repeat_region398
seq4	LTRharvest	target_site_duplication	10638476	10638479	.	+	.	Parent=repeat_region398
seq4	LTRharvest	LTR_retrotransposon	10638480	10643372	.	+	.	ID=LTR_retrotransposon398;Parent=repeat_region398;ltr_similarity=89.60;seq_number=4
seq4	LTRharvest	long_terminal_repeat	10638480	10638650	.	+	.	Parent=LTR_retrotransposon398
seq4	LTRdigest	protein_match	10639078	10639327	2.3e-08	+	.	Parent=LTR_retrotransposon398;reading_frame=1;name=Retrotrans_gag
seq4	LTRdigest	protein_match	10640431	10640590	8.5e-08	+	.	Parent=LTR_retrotransposon398;reading_frame=1;name=rve
seq4	LTRdigest	protein_match	10640597	10640762	5.6e-13	+	.	Parent=LTR_retrotransposon398;reading_frame=2;name=rve
seq4	LTRharvest	long_terminal_repeat	10643200	10643372	.	+	.	Parent=LTR_retrotransposon398
seq4	LTRdigest	RR_tract	10643208	10643216	.	+	.	Parent=LTR_retrotransposon398
seq4	LTRharvest	target_site_duplication	10643373	10643376	.	+	.	Parent=repeat_region398
###
seq4	LTRharvest	repeat_region	10808400	10812944	.	+	.	ID=repeat_region399
seq4	LTRharvest	target_site_duplication	10808400	10808403	.	+	.	Parent=repeat_region399
seq4	LTRharvest	LTR_retrotransposon	10808404	10812940	.	+	.	ID=LTR_retrotransposon399;Parent=repeat_region399;ltr_similarity=88.80;seq_number=4
seq4	LTRharvest	long_terminal_repeat	10808404	10808634	.	+	.	Parent=LTR_retrotransposon399
seq4	LTRdigest	protein_match	10810214	10810556	1.2e-22	+	.	Parent=LTR_retrotransposon399;reading_frame=1;name=rve
seq4	LTRharvest	long_terminal_repeat	10812700	10812940	.	+	.	Parent=LTR_retrotransposon399
seq4	LTRdigest	RR_tract	10812710	10812722	.	+	.	Parent=LTR_retrotransposon399
seq4	LTRharvest	target_site_duplication	10812941	10812944	.	+	.	Parent=repeat_region399
###
seq4	LTRharvest	repeat_region	11159501	11166125	.	+	.	ID=repeat_region400
seq4	LTRharvest	target_site_duplication	11159501	11159505	.	+	.	Parent=repeat_region400
seq4	LTRharvest	LTR_retrotransposon	11159506	11166120	.	+	.	ID=LTR_retrotransposon400;Parent=repeat_region400;ltr_similarity=95.37;seq_number=4
seq4	LTRharvest	long_terminal_repeat	11159506	11160714	.	+	.	Parent=LTR_retrotransposon400
seq4	LTRdigest	primer_binding_site	11160719	11160732	3.5	+	.	Parent=LTR_retrotransposon400;trna=Arabidopsis_thaliana_tRNA-Asp-GTC-5-1 (chr5.trna27-AspGTC) chr5:11785055-11785129 (+) Asp (GTC) 75 bp Sc: 60.1;trnaoffset=0;pbsoffset=4;edist=1
seq4	LTRdigest	protein_match	11161501	11161774	1.1e-17	+	.	Parent=LTR_retrotransposon400;reading_frame=0;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	11164913	11166120	.	+	.	Parent=LTR_retrotransposon400
seq4	LTRharvest	target_site_duplication	11166121	11166125	.	+	.	Parent=repeat_region400
###
seq4	LTRharvest	repeat_region	11491563	11496135	.	+	.	ID=repeat_region401
seq4	LTRharvest	target_site_duplication	11491563	11491566	.	+	.	Parent=repeat_region401
seq4	LTRharvest	LTR_retrotransposon	11491567	11496131	.	+	.	ID=LTR_retrotransposon401;Parent=repeat_region401;ltr_similarity=89.86;seq_number=4
seq4	LTRharvest	long_terminal_repeat	11491567	11491856	.	+	.	Parent=LTR_retrotransposon401
seq4	LTRdigest	RR_tract	11495835	11495860	.	+	.	Parent=LTR_retrotransposon401
seq4	LTRharvest	long_terminal_repeat	11495836	11496131	.	+	.	Parent=LTR_retrotransposon401
seq4	LTRharvest	target_site_duplication	11496132	11496135	.	+	.	Parent=repeat_region401
###
seq4	LTRharvest	repeat_region	11503484	11512866	.	-	.	ID=repeat_region402
seq4	LTRharvest	target_site_duplication	11503484	11503487	.	-	.	Parent=repeat_region402
seq4	LTRharvest	LTR_retrotransposon	11503488	11512862	.	-	.	ID=LTR_retrotransposon402;Parent=repeat_region402;ltr_similarity=95.41;seq_number=4
seq4	LTRharvest	long_terminal_repeat	11503488	11504268	.	-	.	Parent=LTR_retrotransposon402
seq4	LTRdigest	protein_match	11507132	11507465	3.7e-17	-	.	Parent=LTR_retrotransposon402;reading_frame=0;name=rve
seq4	LTRdigest	protein_match	11509052	11509322	1.7e-09	-	.	Parent=LTR_retrotransposon402;reading_frame=0;name=RVT_1
seq4	LTRharvest	long_terminal_repeat	11512078	11512862	.	-	.	Parent=LTR_retrotransposon402
seq4	LTRharvest	target_site_duplication	11512863	11512866	.	-	.	Parent=repeat_region402
###
seq4	LTRharvest	repeat_region	11515550	11521091	.	-	.	ID=repeat_region403
seq4	LTRharvest	target_site_duplication	11515550	11515553	.	-	.	Parent=repeat_region403
seq4	LTRharvest	LTR_retrotransposon	11515554	11521087	.	-	.	ID=LTR_retrotransposon403;Parent=repeat_region403;ltr_similarity=95.24;seq_number=4
seq4	LTRharvest	long_terminal_repeat	11515554	11516309	.	-	.	Parent=LTR_retrotransposon403
seq4	LTRdigest	protein_match	11515927	11516224	9.9e-24	-	.	Parent=LTR_retrotransposon403;reading_frame=0;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	11520336	11521087	.	-	.	Parent=LTR_retrotransposon403
seq4	LTRharvest	target_site_duplication	11521088	11521091	.	-	.	Parent=repeat_region403
###
seq4	LTRharvest	repeat_region	11621557	11635009	.	-	.	ID=repeat_region404
seq4	LTRharvest	target_site_duplication	11621557	11621560	.	-	.	Parent=repeat_region404
seq4	LTRharvest	LTR_retrotransposon	11621561	11635005	.	-	.	ID=LTR_retrotransposon404;Parent=repeat_region404;ltr_similarity=96.07;seq_number=4
seq4	LTRharvest	long_terminal_repeat	11621561	11622067	.	-	.	Parent=LTR_retrotransposon404
seq4	LTRdigest	protein_match	11632637	11632931	9.5e-22	-	.	Parent=LTR_retrotransposon404;reading_frame=1;name=rve
seq4	LTRharvest	long_terminal_repeat	11634497	11635005	.	-	.	Parent=LTR_retrotransposon404
seq4	LTRharvest	target_site_duplication	11635006	11635009	.	-	.	Parent=repeat_region404
###
seq4	LTRharvest	repeat_region	11980550	11994155	.	+	.	ID=repeat_region405
seq4	LTRharvest	target_site_duplication	11980550	11980553	.	+	.	Parent=repeat_region405
seq4	LTRharvest	LTR_retrotransposon	11980554	11994151	.	+	.	ID=LTR_retrotransposon405;Parent=repeat_region405;ltr_similarity=95.32;seq_number=4
seq4	LTRharvest	long_terminal_repeat	11980554	11981749	.	+	.	Parent=LTR_retrotransposon405
seq4	LTRdigest	protein_match	11982090	11982315	1.3e-14	+	.	Parent=LTR_retrotransposon405;reading_frame=0;name=Retrotrans_gag
seq4	LTRdigest	protein_match	11984727	11985129	2.6e-12	+	.	Parent=LTR_retrotransposon405;reading_frame=0;name=RVT_1
seq4	LTRdigest	protein_match	11986441	11986768	1.2e-23	+	.	Parent=LTR_retrotransposon405;reading_frame=1;name=rve
seq4	LTRharvest	long_terminal_repeat	11992959	11994151	.	+	.	Parent=LTR_retrotransposon405
seq4	LTRdigest	RR_tract	11992972	11992979	.	+	.	Parent=LTR_retrotransposon405
seq4	LTRharvest	target_site_duplication	11994152	11994155	.	+	.	Parent=repeat_region405
###
seq4	LTRharvest	repeat_region	12189056	12194352	.	-	.	ID=repeat_region406
seq4	LTRharvest	target_site_duplication	12189056	12189059	.	-	.	Parent=repeat_region406
seq4	LTRharvest	LTR_retrotransposon	12189060	12194348	.	-	.	ID=LTR_retrotransposon406;Parent=repeat_region406;ltr_similarity=92.87;seq_number=4
seq4	LTRharvest	long_terminal_repeat	12189060	12189648	.	-	.	Parent=LTR_retrotransposon406
seq4	LTRdigest	protein_match	12193402	12193648	3.3e-13	-	.	Parent=LTR_retrotransposon406;reading_frame=1;name=rve
seq4	LTRharvest	long_terminal_repeat	12193781	12194348	.	-	.	Parent=LTR_retrotransposon406
seq4	LTRharvest	target_site_duplication	12194349	12194352	.	-	.	Parent=repeat_region406
###
seq4	LTRharvest	repeat_region	13253683	13258457	.	-	.	ID=repeat_region407
seq4	LTRharvest	target_site_duplication	13253683	13253686	.	-	.	Parent=repeat_region407
seq4	LTRharvest	LTR_retrotransposon	13253687	13258453	.	-	.	ID=LTR_retrotransposon407;Parent=repeat_region407;ltr_similarity=88.80;seq_number=4
seq4	LTRharvest	long_terminal_repeat	13253687	13253811	.	-	.	Parent=LTR_retrotransposon407
seq4	LTRdigest	protein_match	13256039	13256366	1.9e-20	-	.	Parent=LTR_retrotransposon407;reading_frame=2;name=rve
seq4	LTRdigest	protein_match	13257509	13257833	3.2e-20	-	.	Parent=LTR_retrotransposon407;reading_frame=2;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	13258330	13258453	.	-	.	Parent=LTR_retrotransposon407
seq4	LTRharvest	target_site_duplication	13258454	13258457	.	-	.	Parent=repeat_region407
###
seq4	LTRharvest	repeat_region	13261016	13272515	.	-	.	ID=repeat_region408
seq4	LTRharvest	target_site_duplication	13261016	13261020	.	-	.	Parent=repeat_region408
seq4	LTRharvest	LTR_retrotransposon	13261021	13272510	.	-	.	ID=LTR_retrotransposon408;Parent=repeat_region408;ltr_similarity=99.43;seq_number=4
seq4	LTRharvest	long_terminal_repeat	13261021	13262781	.	-	.	Parent=LTR_retrotransposon408
seq4	LTRdigest	protein_match	13265501	13265828	3e-23	-	.	Parent=LTR_retrotransposon408;reading_frame=1;name=rve
seq4	LTRdigest	protein_match	13266989	13267472	5.7e-25	-	.	Parent=LTR_retrotransposon408;reading_frame=1;name=RVT_1
seq4	LTRdigest	protein_match	13269938	13270217	9.4e-26	-	.	Parent=LTR_retrotransposon408;reading_frame=1;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	13270750	13272510	.	-	.	Parent=LTR_retrotransposon408
seq4	LTRharvest	target_site_duplication	13272511	13272515	.	-	.	Parent=repeat_region408
###
seq4	LTRharvest	repeat_region	13344200	13354024	.	+	.	ID=repeat_region409
seq4	LTRharvest	target_site_duplication	13344200	13344203	.	+	.	Parent=repeat_region409
seq4	LTRharvest	LTR_retrotransposon	13344204	13354020	.	+	.	ID=LTR_retrotransposon409;Parent=repeat_region409;ltr_similarity=91.15;seq_number=4
seq4	LTRharvest	long_terminal_repeat	13344204	13344463	.	+	.	Parent=LTR_retrotransposon409
seq4	LTRdigest	protein_match	13350679	13351396	5.4e-42	+	.	Parent=LTR_retrotransposon409;reading_frame=1;name=RVT_1
seq4	LTRharvest	long_terminal_repeat	13353761	13354020	.	+	.	Parent=LTR_retrotransposon409
seq4	LTRharvest	target_site_duplication	13354021	13354024	.	+	.	Parent=repeat_region409
###
seq4	LTRharvest	repeat_region	13607601	13621825	.	+	.	ID=repeat_region410
seq4	LTRharvest	target_site_duplication	13607601	13607604	.	+	.	Parent=repeat_region410
seq4	LTRharvest	LTR_retrotransposon	13607605	13621821	.	+	.	ID=LTR_retrotransposon410;Parent=repeat_region410;ltr_similarity=85.91;seq_number=4
seq4	LTRharvest	long_terminal_repeat	13607605	13608031	.	+	.	Parent=LTR_retrotransposon410
seq4	LTRdigest	RR_tract	13621365	13621375	.	+	.	Parent=LTR_retrotransposon410
seq4	LTRharvest	long_terminal_repeat	13621389	13621821	.	+	.	Parent=LTR_retrotransposon410
seq4	LTRharvest	target_site_duplication	13621822	13621825	.	+	.	Parent=repeat_region410
###
seq4	LTRharvest	repeat_region	13712930	13721140	.	+	.	ID=repeat_region411
seq4	LTRharvest	target_site_duplication	13712930	13712933	.	+	.	Parent=repeat_region411
seq4	LTRharvest	LTR_retrotransposon	13712934	13721136	.	+	.	ID=LTR_retrotransposon411;Parent=repeat_region411;ltr_similarity=83.33;seq_number=4
seq4	LTRharvest	long_terminal_repeat	13712934	13713243	.	+	.	Parent=LTR_retrotransposon411
seq4	LTRdigest	protein_match	13716714	13717326	1.3e-28	+	.	Parent=LTR_retrotransposon411;reading_frame=0;name=RVT_1
seq4	LTRharvest	long_terminal_repeat	13720825	13721136	.	+	.	Parent=LTR_retrotransposon411
seq4	LTRharvest	target_site_duplication	13721137	13721140	.	+	.	Parent=repeat_region411
###
seq4	LTRharvest	repeat_region	13736098	13741138	.	-	.	ID=repeat_region412
seq4	LTRharvest	target_site_duplication	13736098	13736101	.	-	.	Parent=repeat_region412
seq4	LTRharvest	LTR_retrotransposon	13736102	13741134	.	-	.	ID=LTR_retrotransposon412;Parent=repeat_region412;ltr_similarity=93.08;seq_number=4
seq4	LTRharvest	long_terminal_repeat	13736102	13736226	.	-	.	Parent=LTR_retrotransposon412
seq4	LTRdigest	protein_match	13738679	13738853	1.5e-09	-	.	Parent=LTR_retrotransposon412;reading_frame=1;name=rve
seq4	LTRharvest	long_terminal_repeat	13741005	13741134	.	-	.	Parent=LTR_retrotransposon412
seq4	LTRharvest	target_site_duplication	13741135	13741138	.	-	.	Parent=repeat_region412
###
seq4	LTRharvest	repeat_region	13948921	13953987	.	+	.	ID=repeat_region413
seq4	LTRharvest	target_site_duplication	13948921	13948925	.	+	.	Parent=repeat_region413
seq4	LTRharvest	LTR_retrotransposon	13948926	13953982	.	+	.	ID=LTR_retrotransposon413;Parent=repeat_region413;ltr_similarity=95.12;seq_number=4
seq4	LTRharvest	long_terminal_repeat	13948926	13949089	.	+	.	Parent=LTR_retrotransposon413
seq4	LTRdigest	protein_match	13949567	13949864	2.7e-09	+	.	Parent=LTR_retrotransposon413;reading_frame=2;name=Retrotrans_gag
seq4	LTRdigest	protein_match	13950958	13951291	6.6e-22	+	.	Parent=LTR_retrotransposon413;reading_frame=1;name=rve
seq4	LTRdigest	RR_tract	13953815	13953823	.	+	.	Parent=LTR_retrotransposon413
seq4	LTRharvest	long_terminal_repeat	13953819	13953982	.	+	.	Parent=LTR_retrotransposon413
seq4	LTRharvest	target_site_duplication	13953983	13953987	.	+	.	Parent=repeat_region413
###
seq4	LTRharvest	repeat_region	14083249	14088535	.	-	.	ID=repeat_region414
seq4	LTRharvest	target_site_duplication	14083249	14083252	.	-	.	Parent=repeat_region414
seq4	LTRharvest	LTR_retrotransposon	14083253	14088531	.	-	.	ID=LTR_retrotransposon414;Parent=repeat_region414;ltr_similarity=86.92;seq_number=4
seq4	LTRharvest	long_terminal_repeat	14083253	14083382	.	-	.	Parent=LTR_retrotransposon414
seq4	LTRdigest	protein_match	14085762	14086098	1.7e-22	-	.	Parent=LTR_retrotransposon414;reading_frame=0;name=rve
seq4	LTRdigest	protein_match	14087505	14087772	1.3e-10	-	.	Parent=LTR_retrotransposon414;reading_frame=0;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	14088413	14088531	.	-	.	Parent=LTR_retrotransposon414
seq4	LTRharvest	target_site_duplication	14088532	14088535	.	-	.	Parent=repeat_region414
###
seq4	LTRharvest	repeat_region	14113150	14118428	.	-	.	ID=repeat_region415
seq4	LTRharvest	target_site_duplication	14113150	14113153	.	-	.	Parent=repeat_region415
seq4	LTRharvest	LTR_retrotransposon	14113154	14118424	.	-	.	ID=LTR_retrotransposon415;Parent=repeat_region415;ltr_similarity=92.96;seq_number=4
seq4	LTRharvest	long_terminal_repeat	14113154	14113295	.	-	.	Parent=LTR_retrotransposon415
seq4	LTRdigest	RR_tract	14113317	14113325	.	-	.	Parent=LTR_retrotransposon415
seq4	LTRdigest	protein_match	14115659	14115986	6.2e-22	-	.	Parent=LTR_retrotransposon415;reading_frame=2;name=rve
seq4	LTRdigest	protein_match	14117323	14117542	5.2e-07	-	.	Parent=LTR_retrotransposon415;reading_frame=0;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	14118283	14118424	.	-	.	Parent=LTR_retrotransposon415
seq4	LTRharvest	target_site_duplication	14118425	14118428	.	-	.	Parent=repeat_region415
###
seq4	LTRharvest	repeat_region	14203863	14209076	.	+	.	ID=repeat_region416
seq4	LTRharvest	target_site_duplication	14203863	14203866	.	+	.	Parent=repeat_region416
seq4	LTRharvest	LTR_retrotransposon	14203867	14209072	.	+	.	ID=LTR_retrotransposon416;Parent=repeat_region416;ltr_similarity=94.11;seq_number=4
seq4	LTRharvest	long_terminal_repeat	14203867	14204375	.	+	.	Parent=LTR_retrotransposon416
seq4	LTRdigest	primer_binding_site	14204373	14204383	3.58	+	.	Parent=LTR_retrotransposon416;trna=Arabidopsis_thaliana_tRNA-Leu-TAA-2-1 (chr2.trna49-LeuTAA) chr2:15320234-15320316 (+) Leu (TAA) 83 bp Sc: 81.1;trnaoffset=2;pbsoffset=3;edist=1
seq4	LTRdigest	protein_match	14205989	14206292	3.4e-24	+	.	Parent=LTR_retrotransposon416;reading_frame=1;name=rve
seq4	LTRharvest	long_terminal_repeat	14208578	14209072	.	+	.	Parent=LTR_retrotransposon416
seq4	LTRharvest	target_site_duplication	14209073	14209076	.	+	.	Parent=repeat_region416
###
seq4	LTRharvest	repeat_region	14409572	14414452	.	+	.	ID=repeat_region417
seq4	LTRharvest	target_site_duplication	14409572	14409575	.	+	.	Parent=repeat_region417
seq4	LTRharvest	LTR_retrotransposon	14409576	14414448	.	+	.	ID=LTR_retrotransposon417;Parent=repeat_region417;ltr_similarity=94.08;seq_number=4
seq4	LTRharvest	long_terminal_repeat	14409576	14409727	.	+	.	Parent=LTR_retrotransposon417
seq4	LTRdigest	RR_tract	14414293	14414301	.	+	.	Parent=LTR_retrotransposon417
seq4	LTRharvest	long_terminal_repeat	14414299	14414448	.	+	.	Parent=LTR_retrotransposon417
seq4	LTRharvest	target_site_duplication	14414449	14414452	.	+	.	Parent=repeat_region417
###
seq4	LTRharvest	repeat_region	14468872	14473752	.	+	.	ID=repeat_region418
seq4	LTRharvest	target_site_duplication	14468872	14468875	.	+	.	Parent=repeat_region418
seq4	LTRharvest	LTR_retrotransposon	14468876	14473748	.	+	.	ID=LTR_retrotransposon418;Parent=repeat_region418;ltr_similarity=94.08;seq_number=4
seq4	LTRharvest	long_terminal_repeat	14468876	14469027	.	+	.	Parent=LTR_retrotransposon418
seq4	LTRdigest	RR_tract	14473593	14473601	.	+	.	Parent=LTR_retrotransposon418
seq4	LTRharvest	long_terminal_repeat	14473599	14473748	.	+	.	Parent=LTR_retrotransposon418
seq4	LTRharvest	target_site_duplication	14473749	14473752	.	+	.	Parent=repeat_region418
###
seq4	LTRharvest	repeat_region	14756542	14764123	.	?	.	ID=repeat_region419
seq4	LTRharvest	target_site_duplication	14756542	14756545	.	?	.	Parent=repeat_region419
seq4	LTRharvest	LTR_retrotransposon	14756546	14764119	.	?	.	ID=LTR_retrotransposon419;Parent=repeat_region419;ltr_similarity=85.79;seq_number=4
seq4	LTRharvest	long_terminal_repeat	14756546	14756718	.	?	.	Parent=LTR_retrotransposon419
seq4	LTRharvest	long_terminal_repeat	14763937	14764119	.	?	.	Parent=LTR_retrotransposon419
seq4	LTRharvest	target_site_duplication	14764120	14764123	.	?	.	Parent=repeat_region419
###
seq4	LTRharvest	repeat_region	14873448	14880650	.	?	.	ID=repeat_region420
seq4	LTRharvest	target_site_duplication	14873448	14873451	.	?	.	Parent=repeat_region420
seq4	LTRharvest	LTR_retrotransposon	14873452	14880646	.	?	.	ID=LTR_retrotransposon420;Parent=repeat_region420;ltr_similarity=86.37;seq_number=4
seq4	LTRharvest	long_terminal_repeat	14873452	14873890	.	?	.	Parent=LTR_retrotransposon420
seq4	LTRharvest	long_terminal_repeat	14880192	14880646	.	?	.	Parent=LTR_retrotransposon420
seq4	LTRharvest	target_site_duplication	14880647	14880650	.	?	.	Parent=repeat_region420
###
seq4	LTRharvest	repeat_region	15175718	15180979	.	+	.	ID=repeat_region421
seq4	LTRharvest	target_site_duplication	15175718	15175721	.	+	.	Parent=repeat_region421
seq4	LTRharvest	LTR_retrotransposon	15175722	15180975	.	+	.	ID=LTR_retrotransposon421;Parent=repeat_region421;ltr_similarity=95.81;seq_number=4
seq4	LTRharvest	long_terminal_repeat	15175722	15176317	.	+	.	Parent=LTR_retrotransposon421
seq4	LTRdigest	RR_tract	15180363	15180377	.	+	.	Parent=LTR_retrotransposon421
seq4	LTRharvest	long_terminal_repeat	15180381	15180975	.	+	.	Parent=LTR_retrotransposon421
seq4	LTRharvest	target_site_duplication	15180976	15180979	.	+	.	Parent=repeat_region421
###
seq4	LTRharvest	repeat_region	15277974	15284591	.	-	.	ID=repeat_region422
seq4	LTRharvest	target_site_duplication	15277974	15277977	.	-	.	Parent=repeat_region422
seq4	LTRharvest	LTR_retrotransposon	15277978	15284587	.	-	.	ID=LTR_retrotransposon422;Parent=repeat_region422;ltr_similarity=80.60;seq_number=4
seq4	LTRharvest	long_terminal_repeat	15277978	15278104	.	-	.	Parent=LTR_retrotransposon422
seq4	LTRdigest	RR_tract	15278110	15278117	.	-	.	Parent=LTR_retrotransposon422
seq4	LTRharvest	long_terminal_repeat	15284454	15284587	.	-	.	Parent=LTR_retrotransposon422
seq4	LTRharvest	target_site_duplication	15284588	15284591	.	-	.	Parent=repeat_region422
###
seq4	LTRharvest	repeat_region	15320405	15326093	.	-	.	ID=repeat_region423
seq4	LTRharvest	target_site_duplication	15320405	15320409	.	-	.	Parent=repeat_region423
seq4	LTRharvest	LTR_retrotransposon	15320410	15326088	.	-	.	ID=LTR_retrotransposon423;Parent=repeat_region423;ltr_similarity=86.90;seq_number=4
seq4	LTRharvest	long_terminal_repeat	15320410	15320638	.	-	.	Parent=LTR_retrotransposon423
seq4	LTRdigest	RR_tract	15320628	15320637	.	-	.	Parent=LTR_retrotransposon423
seq4	LTRharvest	long_terminal_repeat	15325863	15326088	.	-	.	Parent=LTR_retrotransposon423
seq4	LTRharvest	target_site_duplication	15326089	15326093	.	-	.	Parent=repeat_region423
###
seq4	LTRharvest	repeat_region	15377474	15384921	.	+	.	ID=repeat_region424
seq4	LTRharvest	target_site_duplication	15377474	15377477	.	+	.	Parent=repeat_region424
seq4	LTRharvest	LTR_retrotransposon	15377478	15384917	.	+	.	ID=LTR_retrotransposon424;Parent=repeat_region424;ltr_similarity=96.11;seq_number=4
seq4	LTRharvest	long_terminal_repeat	15377478	15378066	.	+	.	Parent=LTR_retrotransposon424
seq4	LTRharvest	long_terminal_repeat	15384327	15384917	.	+	.	Parent=LTR_retrotransposon424
seq4	LTRdigest	RR_tract	15384340	15384348	.	+	.	Parent=LTR_retrotransposon424
seq4	LTRharvest	target_site_duplication	15384918	15384921	.	+	.	Parent=repeat_region424
###
seq4	LTRharvest	repeat_region	15411863	15416291	.	?	.	ID=repeat_region425
seq4	LTRharvest	target_site_duplication	15411863	15411866	.	?	.	Parent=repeat_region425
seq4	LTRharvest	LTR_retrotransposon	15411867	15416287	.	?	.	ID=LTR_retrotransposon425;Parent=repeat_region425;ltr_similarity=85.93;seq_number=4
seq4	LTRharvest	long_terminal_repeat	15411867	15412127	.	?	.	Parent=LTR_retrotransposon425
seq4	LTRharvest	long_terminal_repeat	15416018	15416287	.	?	.	Parent=LTR_retrotransposon425
seq4	LTRharvest	target_site_duplication	15416288	15416291	.	?	.	Parent=repeat_region425
###
seq4	LTRharvest	repeat_region	15646194	15651176	.	-	.	ID=repeat_region426
seq4	LTRharvest	target_site_duplication	15646194	15646197	.	-	.	Parent=repeat_region426
seq4	LTRharvest	LTR_retrotransposon	15646198	15651172	.	-	.	ID=LTR_retrotransposon426;Parent=repeat_region426;ltr_similarity=98.93;seq_number=4
seq4	LTRharvest	long_terminal_repeat	15646198	15646572	.	-	.	Parent=LTR_retrotransposon426
seq4	LTRdigest	protein_match	15648935	15649082	8.1e-11	-	.	Parent=LTR_retrotransposon426;reading_frame=2;name=rve
seq4	LTRdigest	protein_match	15649165	15649285	5.9e-05	-	.	Parent=LTR_retrotransposon426;reading_frame=0;name=rve
seq4	LTRharvest	long_terminal_repeat	15650798	15651172	.	-	.	Parent=LTR_retrotransposon426
seq4	LTRharvest	target_site_duplication	15651173	15651176	.	-	.	Parent=repeat_region426
###
seq4	LTRharvest	repeat_region	15813252	15821252	.	?	.	ID=repeat_region427
seq4	LTRharvest	target_site_duplication	15813252	15813255	.	?	.	Parent=repeat_region427
seq4	LTRharvest	LTR_retrotransposon	15813256	15821248	.	?	.	ID=LTR_retrotransposon427;Parent=repeat_region427;ltr_similarity=89.82;seq_number=4
seq4	LTRharvest	long_terminal_repeat	15813256	15813479	.	?	.	Parent=LTR_retrotransposon427
seq4	LTRharvest	long_terminal_repeat	15821023	15821248	.	?	.	Parent=LTR_retrotransposon427
seq4	LTRharvest	target_site_duplication	15821249	15821252	.	?	.	Parent=repeat_region427
###
seq4	LTRharvest	repeat_region	16509650	16515439	.	?	.	ID=repeat_region428
seq4	LTRharvest	target_site_duplication	16509650	16509653	.	?	.	Parent=repeat_region428
seq4	LTRharvest	LTR_retrotransposon	16509654	16515435	.	?	.	ID=LTR_retrotransposon428;Parent=repeat_region428;ltr_similarity=86.97;seq_number=4
seq4	LTRharvest	long_terminal_repeat	16509654	16509960	.	?	.	Parent=LTR_retrotransposon428
seq4	LTRharvest	long_terminal_repeat	16515135	16515435	.	?	.	Parent=LTR_retrotransposon428
seq4	LTRharvest	target_site_duplication	16515436	16515439	.	?	.	Parent=repeat_region428
###
seq4	LTRharvest	repeat_region	16615181	16620071	.	?	.	ID=repeat_region429
seq4	LTRharvest	target_site_duplication	16615181	16615184	.	?	.	Parent=repeat_region429
seq4	LTRharvest	LTR_retrotransposon	16615185	16620067	.	?	.	ID=LTR_retrotransposon429;Parent=repeat_region429;ltr_similarity=83.02;seq_number=4
seq4	LTRharvest	long_terminal_repeat	16615185	16615338	.	?	.	Parent=LTR_retrotransposon429
seq4	LTRharvest	long_terminal_repeat	16619909	16620067	.	?	.	Parent=LTR_retrotransposon429
seq4	LTRharvest	target_site_duplication	16620068	16620071	.	?	.	Parent=repeat_region429
###
seq4	LTRharvest	repeat_region	16882612	16889704	.	?	.	ID=repeat_region430
seq4	LTRharvest	target_site_duplication	16882612	16882615	.	?	.	Parent=repeat_region430
seq4	LTRharvest	LTR_retrotransposon	16882616	16889700	.	?	.	ID=LTR_retrotransposon430;Parent=repeat_region430;ltr_similarity=84.13;seq_number=4
seq4	LTRharvest	long_terminal_repeat	16882616	16882737	.	?	.	Parent=LTR_retrotransposon430
seq4	LTRharvest	long_terminal_repeat	16889575	16889700	.	?	.	Parent=LTR_retrotransposon430
seq4	LTRharvest	target_site_duplication	16889701	16889704	.	?	.	Parent=repeat_region430
###
seq4	LTRharvest	repeat_region	17090766	17095679	.	-	.	ID=repeat_region431
seq4	LTRharvest	target_site_duplication	17090766	17090769	.	-	.	Parent=repeat_region431
seq4	LTRharvest	LTR_retrotransposon	17090770	17095675	.	-	.	ID=LTR_retrotransposon431;Parent=repeat_region431;ltr_similarity=95.65;seq_number=4
seq4	LTRharvest	long_terminal_repeat	17090770	17090930	.	-	.	Parent=LTR_retrotransposon431
seq4	LTRdigest	protein_match	17093112	17093439	1.9e-19	-	.	Parent=LTR_retrotransposon431;reading_frame=1;name=rve
seq4	LTRdigest	protein_match	17094648	17094975	5.9e-26	-	.	Parent=LTR_retrotransposon431;reading_frame=1;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	17095515	17095675	.	-	.	Parent=LTR_retrotransposon431
seq4	LTRharvest	target_site_duplication	17095676	17095679	.	-	.	Parent=repeat_region431
###
seq4	LTRharvest	repeat_region	17394153	17400646	.	?	.	ID=repeat_region432
seq4	LTRharvest	target_site_duplication	17394153	17394156	.	?	.	Parent=repeat_region432
seq4	LTRharvest	LTR_retrotransposon	17394157	17400642	.	?	.	ID=LTR_retrotransposon432;Parent=repeat_region432;ltr_similarity=75.00;seq_number=4
seq4	LTRharvest	long_terminal_repeat	17394157	17394300	.	?	.	Parent=LTR_retrotransposon432
seq4	LTRharvest	long_terminal_repeat	17400507	17400642	.	?	.	Parent=LTR_retrotransposon432
seq4	LTRharvest	target_site_duplication	17400643	17400646	.	?	.	Parent=repeat_region432
###
seq4	LTRharvest	repeat_region	17596760	17605851	.	+	.	ID=repeat_region433
seq4	LTRharvest	target_site_duplication	17596760	17596763	.	+	.	Parent=repeat_region433
seq4	LTRharvest	LTR_retrotransposon	17596764	17605847	.	+	.	ID=LTR_retrotransposon433;Parent=repeat_region433;ltr_similarity=98.56;seq_number=4
seq4	LTRharvest	long_terminal_repeat	17596764	17597314	.	+	.	Parent=LTR_retrotransposon433
seq4	LTRdigest	protein_match	17599767	17600115	6.3e-27	+	.	Parent=LTR_retrotransposon433;reading_frame=0;name=rve
seq4	LTRdigest	RR_tract	17605284	17605296	.	+	.	Parent=LTR_retrotransposon433
seq4	LTRharvest	long_terminal_repeat	17605293	17605847	.	+	.	Parent=LTR_retrotransposon433
seq4	LTRharvest	target_site_duplication	17605848	17605851	.	+	.	Parent=repeat_region433
###
seq4	LTRharvest	repeat_region	18119045	18132016	.	?	.	ID=repeat_region434
seq4	LTRharvest	target_site_duplication	18119045	18119048	.	?	.	Parent=repeat_region434
seq4	LTRharvest	LTR_retrotransposon	18119049	18132012	.	?	.	ID=LTR_retrotransposon434;Parent=repeat_region434;ltr_similarity=79.74;seq_number=4
seq4	LTRharvest	long_terminal_repeat	18119049	18119196	.	?	.	Parent=LTR_retrotransposon434
seq4	LTRharvest	long_terminal_repeat	18131860	18132012	.	?	.	Parent=LTR_retrotransposon434
seq4	LTRharvest	target_site_duplication	18132013	18132016	.	?	.	Parent=repeat_region434
###
seq4	LTRharvest	repeat_region	18142151	18146902	.	-	.	ID=repeat_region435
seq4	LTRharvest	target_site_duplication	18142151	18142155	.	-	.	Parent=repeat_region435
seq4	LTRharvest	LTR_retrotransposon	18142156	18146897	.	-	.	ID=LTR_retrotransposon435;Parent=repeat_region435;ltr_similarity=100.00;seq_number=4
seq4	LTRharvest	long_terminal_repeat	18142156	18142275	.	-	.	Parent=LTR_retrotransposon435
seq4	LTRdigest	RR_tract	18142259	18142269	.	-	.	Parent=LTR_retrotransposon435
seq4	LTRdigest	protein_match	18144727	18145063	1.4e-24	-	.	Parent=LTR_retrotransposon435;reading_frame=1;name=rve
seq4	LTRdigest	protein_match	18146098	18146368	1.3e-07	-	.	Parent=LTR_retrotransposon435;reading_frame=1;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	18146778	18146897	.	-	.	Parent=LTR_retrotransposon435
seq4	LTRharvest	target_site_duplication	18146898	18146902	.	-	.	Parent=repeat_region435
###
seq4	LTRharvest	repeat_region	18233612	18238207	.	+	.	ID=repeat_region436
seq4	LTRharvest	target_site_duplication	18233612	18233615	.	+	.	Parent=repeat_region436
seq4	LTRharvest	LTR_retrotransposon	18233616	18238203	.	+	.	ID=LTR_retrotransposon436;Parent=repeat_region436;ltr_similarity=96.15;seq_number=4
seq4	LTRharvest	long_terminal_repeat	18233616	18233874	.	+	.	Parent=LTR_retrotransposon436
seq4	LTRdigest	protein_match	18235400	18235745	6.2e-28	+	.	Parent=LTR_retrotransposon436;reading_frame=2;name=rve
seq4	LTRdigest	RR_tract	18237932	18237940	.	+	.	Parent=LTR_retrotransposon436
seq4	LTRharvest	long_terminal_repeat	18237944	18238203	.	+	.	Parent=LTR_retrotransposon436
seq4	LTRharvest	target_site_duplication	18238204	18238207	.	+	.	Parent=repeat_region436
###
seq4	LTRharvest	repeat_region	18490602	18495237	.	-	.	ID=repeat_region437
seq4	LTRharvest	target_site_duplication	18490602	18490605	.	-	.	Parent=repeat_region437
seq4	LTRharvest	LTR_retrotransposon	18490606	18495233	.	-	.	ID=LTR_retrotransposon437;Parent=repeat_region437;ltr_similarity=99.64;seq_number=4
seq4	LTRharvest	long_terminal_repeat	18490606	18490879	.	-	.	Parent=LTR_retrotransposon437
seq4	LTRdigest	protein_match	18493087	18493441	1.2e-27	-	.	Parent=LTR_retrotransposon437;reading_frame=1;name=rve
seq4	LTRharvest	long_terminal_repeat	18494961	18495233	.	-	.	Parent=LTR_retrotransposon437
seq4	LTRharvest	target_site_duplication	18495234	18495237	.	-	.	Parent=repeat_region437
###
seq4	LTRharvest	repeat_region	18511244	18518556	.	?	.	ID=repeat_region438
seq4	LTRharvest	target_site_duplication	18511244	18511247	.	?	.	Parent=repeat_region438
seq4	LTRharvest	LTR_retrotransposon	18511248	18518552	.	?	.	ID=LTR_retrotransposon438;Parent=repeat_region438;ltr_similarity=79.86;seq_number=4
seq4	LTRharvest	long_terminal_repeat	18511248	18511380	.	?	.	Parent=LTR_retrotransposon438
seq4	LTRharvest	long_terminal_repeat	18518414	18518552	.	?	.	Parent=LTR_retrotransposon438
seq4	LTRharvest	target_site_duplication	18518553	18518556	.	?	.	Parent=repeat_region438
###
seq4	LTRharvest	repeat_region	18551366	18557059	.	?	.	ID=repeat_region439
seq4	LTRharvest	target_site_duplication	18551366	18551369	.	?	.	Parent=repeat_region439
seq4	LTRharvest	LTR_retrotransposon	18551370	18557055	.	?	.	ID=LTR_retrotransposon439;Parent=repeat_region439;ltr_similarity=84.35;seq_number=4
seq4	LTRharvest	long_terminal_repeat	18551370	18551484	.	?	.	Parent=LTR_retrotransposon439
seq4	LTRharvest	long_terminal_repeat	18556954	18557055	.	?	.	Parent=LTR_retrotransposon439
seq4	LTRharvest	target_site_duplication	18557056	18557059	.	?	.	Parent=repeat_region439
###
seq4	LTRharvest	repeat_region	18673104	18678361	.	?	.	ID=repeat_region440
seq4	LTRharvest	target_site_duplication	18673104	18673107	.	?	.	Parent=repeat_region440
seq4	LTRharvest	LTR_retrotransposon	18673108	18678357	.	?	.	ID=LTR_retrotransposon440;Parent=repeat_region440;ltr_similarity=84.23;seq_number=4
seq4	LTRharvest	long_terminal_repeat	18673108	18673367	.	?	.	Parent=LTR_retrotransposon440
seq4	LTRharvest	long_terminal_repeat	18678110	18678357	.	?	.	Parent=LTR_retrotransposon440
seq4	LTRharvest	target_site_duplication	18678358	18678361	.	?	.	Parent=repeat_region440
###
seq4	LTRharvest	repeat_region	18933098	18938951	.	-	.	ID=repeat_region441
seq4	LTRharvest	target_site_duplication	18933098	18933101	.	-	.	Parent=repeat_region441
seq4	LTRharvest	LTR_retrotransposon	18933102	18938947	.	-	.	ID=LTR_retrotransposon441;Parent=repeat_region441;ltr_similarity=97.20;seq_number=4
seq4	LTRharvest	long_terminal_repeat	18933102	18933630	.	-	.	Parent=LTR_retrotransposon441
seq4	LTRdigest	RR_tract	18933647	18933659	.	-	.	Parent=LTR_retrotransposon441
seq4	LTRharvest	long_terminal_repeat	18938412	18938947	.	-	.	Parent=LTR_retrotransposon441
seq4	LTRharvest	target_site_duplication	18938948	18938951	.	-	.	Parent=repeat_region441
###
seq4	LTRharvest	repeat_region	19345982	19351111	.	?	.	ID=repeat_region442
seq4	LTRharvest	target_site_duplication	19345982	19345985	.	?	.	Parent=repeat_region442
seq4	LTRharvest	LTR_retrotransposon	19345986	19351107	.	?	.	ID=LTR_retrotransposon442;Parent=repeat_region442;ltr_similarity=84.48;seq_number=4
seq4	LTRharvest	long_terminal_repeat	19345986	19346159	.	?	.	Parent=LTR_retrotransposon442
seq4	LTRharvest	long_terminal_repeat	19350942	19351107	.	?	.	Parent=LTR_retrotransposon442
seq4	LTRharvest	target_site_duplication	19351108	19351111	.	?	.	Parent=repeat_region442
###
seq4	LTRharvest	repeat_region	19700780	19710580	.	?	.	ID=repeat_region443
seq4	LTRharvest	target_site_duplication	19700780	19700783	.	?	.	Parent=repeat_region443
seq4	LTRharvest	LTR_retrotransposon	19700784	19710576	.	?	.	ID=LTR_retrotransposon443;Parent=repeat_region443;ltr_similarity=89.80;seq_number=4
seq4	LTRharvest	long_terminal_repeat	19700784	19701028	.	?	.	Parent=LTR_retrotransposon443
seq4	LTRharvest	long_terminal_repeat	19710340	19710576	.	?	.	Parent=LTR_retrotransposon443
seq4	LTRharvest	target_site_duplication	19710577	19710580	.	?	.	Parent=repeat_region443
###
seq4	LTRharvest	repeat_region	19987107	19992589	.	+	.	ID=repeat_region444
seq4	LTRharvest	target_site_duplication	19987107	19987110	.	+	.	Parent=repeat_region444
seq4	LTRharvest	LTR_retrotransposon	19987111	19992585	.	+	.	ID=LTR_retrotransposon444;Parent=repeat_region444;ltr_similarity=92.02;seq_number=4
seq4	LTRharvest	long_terminal_repeat	19987111	19987273	.	+	.	Parent=LTR_retrotransposon444
seq4	LTRdigest	RR_tract	19992412	19992441	.	+	.	Parent=LTR_retrotransposon444
seq4	LTRharvest	long_terminal_repeat	19992424	19992585	.	+	.	Parent=LTR_retrotransposon444
seq4	LTRharvest	target_site_duplication	19992586	19992589	.	+	.	Parent=repeat_region444
###
seq4	LTRharvest	repeat_region	20391914	20401649	.	?	.	ID=repeat_region445
seq4	LTRharvest	target_site_duplication	20391914	20391918	.	?	.	Parent=repeat_region445
seq4	LTRharvest	LTR_retrotransposon	20391919	20401644	.	?	.	ID=LTR_retrotransposon445;Parent=repeat_region445;ltr_similarity=84.86;seq_number=4
seq4	LTRharvest	long_terminal_repeat	20391919	20392103	.	?	.	Parent=LTR_retrotransposon445
seq4	LTRharvest	long_terminal_repeat	20401467	20401644	.	?	.	Parent=LTR_retrotransposon445
seq4	LTRharvest	target_site_duplication	20401645	20401649	.	?	.	Parent=repeat_region445
###
seq4	LTRharvest	repeat_region	21384426	21390120	.	+	.	ID=repeat_region446
seq4	LTRharvest	target_site_duplication	21384426	21384429	.	+	.	Parent=repeat_region446
seq4	LTRharvest	LTR_retrotransposon	21384430	21390116	.	+	.	ID=LTR_retrotransposon446;Parent=repeat_region446;ltr_similarity=83.64;seq_number=4
seq4	LTRharvest	long_terminal_repeat	21384430	21384643	.	+	.	Parent=LTR_retrotransposon446
seq4	LTRdigest	RR_tract	21389893	21389905	.	+	.	Parent=LTR_retrotransposon446
seq4	LTRharvest	long_terminal_repeat	21389919	21390116	.	+	.	Parent=LTR_retrotransposon446
seq4	LTRharvest	target_site_duplication	21390117	21390120	.	+	.	Parent=repeat_region446
###
seq4	LTRharvest	repeat_region	21800239	21805142	.	+	.	ID=repeat_region447
seq4	LTRharvest	target_site_duplication	21800239	21800242	.	+	.	Parent=repeat_region447
seq4	LTRharvest	LTR_retrotransposon	21800243	21805138	.	+	.	ID=LTR_retrotransposon447;Parent=repeat_region447;ltr_similarity=84.40;seq_number=4
seq4	LTRharvest	long_terminal_repeat	21800243	21800351	.	+	.	Parent=LTR_retrotransposon447
seq4	LTRharvest	long_terminal_repeat	21805030	21805138	.	+	.	Parent=LTR_retrotransposon447
seq4	LTRdigest	RR_tract	21805049	21805057	.	+	.	Parent=LTR_retrotransposon447
seq4	LTRharvest	target_site_duplication	21805139	21805142	.	+	.	Parent=repeat_region447
###
seq4	LTRharvest	repeat_region	21915758	21920419	.	?	.	ID=repeat_region448
seq4	LTRharvest	target_site_duplication	21915758	21915761	.	?	.	Parent=repeat_region448
seq4	LTRharvest	LTR_retrotransposon	21915762	21920415	.	?	.	ID=LTR_retrotransposon448;Parent=repeat_region448;ltr_similarity=82.00;seq_number=4
seq4	LTRharvest	long_terminal_repeat	21915762	21916311	.	?	.	Parent=LTR_retrotransposon448
seq4	LTRharvest	long_terminal_repeat	21919877	21920415	.	?	.	Parent=LTR_retrotransposon448
seq4	LTRharvest	target_site_duplication	21920416	21920419	.	?	.	Parent=repeat_region448
###
seq4	LTRharvest	repeat_region	22002009	22006900	.	-	.	ID=repeat_region449
seq4	LTRharvest	target_site_duplication	22002009	22002012	.	-	.	Parent=repeat_region449
seq4	LTRharvest	LTR_retrotransposon	22002013	22006896	.	-	.	ID=LTR_retrotransposon449;Parent=repeat_region449;ltr_similarity=93.33;seq_number=4
seq4	LTRharvest	long_terminal_repeat	22002013	22002207	.	-	.	Parent=LTR_retrotransposon449
seq4	LTRdigest	protein_match	22004567	22004897	1.4e-24	-	.	Parent=LTR_retrotransposon449;reading_frame=1;name=rve
seq4	LTRdigest	protein_match	22006043	22006340	4e-10	-	.	Parent=LTR_retrotransposon449;reading_frame=1;name=Retrotrans_gag
seq4	LTRharvest	long_terminal_repeat	22006704	22006896	.	-	.	Parent=LTR_retrotransposon449
seq4	LTRharvest	target_site_duplication	22006897	22006900	.	-	.	Parent=repeat_region449
###
seq4	LTRharvest	repeat_region	22911043	22916166	.	-	.	ID=repeat_region450
seq4	LTRharvest	target_site_duplication	22911043	22911047	.	-	.	Parent=repeat_region450
seq4	LTRharvest	LTR_retrotransposon	22911048	22916161	.	-	.	ID=LTR_retrotransposon450;Parent=repeat_region450;ltr_similarity=90.74;seq_number=4
seq4	LTRharvest	long_terminal_repeat	22911048	22911208	.	-	.	Parent=LTR_retrotransposon450
seq4	LTRdigest	RR_tract	22911181	22911198	.	-	.	Parent=LTR_retrotransposon450
seq4	LTRharvest	long_terminal_repeat	22916000	22916161	.	-	.	Parent=LTR_retrotransposon450
seq4	LTRharvest	target_site_duplication	22916162	22916166	.	-	.	Parent=repeat_region450
###
seq4	LTRharvest	repeat_region	24129970	24138734	.	+	.	ID=repeat_region451
seq4	LTRharvest	target_site_duplication	24129970	24129973	.	+	.	Parent=repeat_region451
seq4	LTRharvest	LTR_retrotransposon	24129974	24138730	.	+	.	ID=LTR_retrotransposon451;Parent=repeat_region451;ltr_similarity=70.64;seq_number=4
seq4	LTRharvest	long_terminal_repeat	24129974	24130082	.	+	.	Parent=LTR_retrotransposon451
seq4	LTRdigest	primer_binding_site	24130080	24130090	3.41	+	.	Parent=LTR_retrotransposon451;trna=Arabidopsis_thaliana_tRNA-Gln-CTG-1-1 (chr4.trna5-GlnCTG) chr4:1501607-1501678 (+) Gln (CTG) 72 bp Sc: 70.4;trnaoffset=5;pbsoffset=3;edist=1
seq4	LTRharvest	long_terminal_repeat	24138627	24138730	.	+	.	Parent=LTR_retrotransposon451
seq4	LTRharvest	target_site_duplication	24138731	24138734	.	+	.	Parent=repeat_region451
###
seq4	LTRharvest	repeat_region	24526073	24530977	.	?	.	ID=repeat_region452
seq4	LTRharvest	target_site_duplication	24526073	24526076	.	?	.	Parent=repeat_region452
seq4	LTRharvest	LTR_retrotransposon	24526077	24530973	.	?	.	ID=LTR_retrotransposon452;Parent=repeat_region452;ltr_similarity=86.67;seq_number=4
seq4	LTRharvest	long_terminal_repeat	24526077	24526689	.	?	.	Parent=LTR_retrotransposon452
seq4	LTRharvest	long_terminal_repeat	24530359	24530973	.	?	.	Parent=LTR_retrotransposon452
seq4	LTRharvest	target_site_duplication	24530974	24530977	.	?	.	Parent=repeat_region452
###
seq4	LTRharvest	repeat_region	25508998	25517292	.	?	.	ID=repeat_region453
seq4	LTRharvest	target_site_duplication	25508998	25509001	.	?	.	Parent=repeat_region453
seq4	LTRharvest	LTR_retrotransposon	25509002	25517288	.	?	.	ID=LTR_retrotransposon453;Parent=repeat_region453;ltr_similarity=83.90;seq_number=4
seq4	LTRharvest	long_terminal_repeat	25509002	25509119	.	?	.	Parent=LTR_retrotransposon453
seq4	LTRharvest	long_terminal_repeat	25517171	25517288	.	?	.	Parent=LTR_retrotransposon453
seq4	LTRharvest	target_site_duplication	25517289	25517292	.	?	.	Parent=repeat_region453
###
seq4	LTRharvest	repeat_region	25992304	25997855	.	-	.	ID=repeat_region454
seq4	LTRharvest	target_site_duplication	25992304	25992307	.	-	.	Parent=repeat_region454
seq4	LTRharvest	LTR_retrotransposon	25992308	25997851	.	-	.	ID=LTR_retrotransposon454;Parent=repeat_region454;ltr_similarity=82.32;seq_number=4
seq4	LTRharvest	long_terminal_repeat	25992308	25992505	.	-	.	Parent=LTR_retrotransposon454
seq4	LTRdigest	RR_tract	25992519	25992528	.	-	.	Parent=LTR_retrotransposon454
seq4	LTRharvest	long_terminal_repeat	25997667	25997851	.	-	.	Parent=LTR_retrotransposon454
seq4	LTRharvest	target_site_duplication	25997852	25997855	.	-	.	Parent=repeat_region454
###
seq4	LTRharvest	repeat_region	26207869	26219369	.	+	.	ID=repeat_region455
seq4	LTRharvest	target_site_duplication	26207869	26207872	.	+	.	Parent=repeat_region455
seq4	LTRharvest	LTR_retrotransposon	26207873	26219365	.	+	.	ID=LTR_retrotransposon455;Parent=repeat_region455;ltr_similarity=88.07;seq_number=4
seq4	LTRharvest	long_terminal_repeat	26207873	26207981	.	+	.	Parent=LTR_retrotransposon455
seq4	LTRdigest	RR_tract	26219266	26219279	.	+	.	Parent=LTR_retrotransposon455
seq4	LTRharvest	long_terminal_repeat	26219266	26219365	.	+	.	Parent=LTR_retrotransposon455
seq4	LTRharvest	target_site_duplication	26219366	26219369	.	+	.	Parent=repeat_region455
###
seq4	LTRharvest	repeat_region	26587588	26591991	.	+	.	ID=repeat_region456
seq4	LTRharvest	target_site_duplication	26587588	26587591	.	+	.	Parent=repeat_region456
seq4	LTRharvest	LTR_retrotransposon	26587592	26591987	.	+	.	ID=LTR_retrotransposon456;Parent=repeat_region456;ltr_similarity=82.09;seq_number=4
seq4	LTRharvest	long_terminal_repeat	26587592	26587723	.	+	.	Parent=LTR_retrotransposon456
seq4	LTRdigest	RR_tract	26591838	26591846	.	+	.	Parent=LTR_retrotransposon456
seq4	LTRharvest	long_terminal_repeat	26591854	26591987	.	+	.	Parent=LTR_retrotransposon456
seq4	LTRharvest	target_site_duplication	26591988	26591991	.	+	.	Parent=repeat_region456
###
seq5	LTRharvest	repeat_region	111559	129920	.	-	.	ID=repeat_region457
seq5	LTRharvest	target_site_duplication	111559	111562	.	-	.	Parent=repeat_region457
seq5	LTRharvest	LTR_retrotransposon	111563	129916	.	-	.	ID=LTR_retrotransposon457;Parent=repeat_region457;ltr_similarity=93.75;seq_number=5
seq5	LTRharvest	long_terminal_repeat	111563	111753	.	-	.	Parent=LTR_retrotransposon457
seq5	LTRdigest	protein_match	122816	123056	1.7e-05	-	.	Parent=LTR_retrotransposon457;reading_frame=2;name=rve
seq5	LTRharvest	long_terminal_repeat	129725	129916	.	-	.	Parent=LTR_retrotransposon457
seq5	LTRharvest	target_site_duplication	129917	129920	.	-	.	Parent=repeat_region457
###
seq5	LTRharvest	repeat_region	241875	260736	.	?	.	ID=repeat_region458
seq5	LTRharvest	target_site_duplication	241875	241878	.	?	.	Parent=repeat_region458
seq5	LTRharvest	LTR_retrotransposon	241879	260732	.	?	.	ID=LTR_retrotransposon458;Parent=repeat_region458;ltr_similarity=94.23;seq_number=5
seq5	LTRharvest	long_terminal_repeat	241879	242086	.	?	.	Parent=LTR_retrotransposon458
seq5	LTRharvest	long_terminal_repeat	260529	260732	.	?	.	Parent=LTR_retrotransposon458
seq5	LTRharvest	target_site_duplication	260733	260736	.	?	.	Parent=repeat_region458
###
