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A data frame contains mouse B cell average gene expression for multiple cell types, with the rows representing the gene names, column names representing the cell type names.
The original single cell sequencing data is retrieved from 10xgenomics and combined with experimental data
The expression level for different cell types are obtained by calculating the average expression after sorting the original data by markers as shown below. — mus_b_trans • Platypus</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/yeti/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="mus_b_trans
A data frame contains mouse B cell average gene expression for multiple cell types, with the rows representing the gene names, column names representing the cell type names.
The original single cell sequencing data is retrieved from 10xgenomics and combined with experimental data
The expression level for different cell types are obtained by calculating the average expression after sorting the original data by markers as shown below. — mus_b_trans"><meta property="og:description" content="mus_b_trans
A data frame contains mouse B cell average gene expression for multiple cell types, with the rows representing the gene names, column names representing the cell type names.
The original single cell sequencing data is retrieved from 10xgenomics and combined with experimental data
The expression level for different cell types are obtained by calculating the average expression after sorting the original data by markers as shown below."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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    <h1>mus_b_trans
A data frame contains mouse B cell average gene expression for multiple cell types, with the rows representing the gene names, column names representing the cell type names.
The original single cell sequencing data is retrieved from 10xgenomics and combined with experimental data
The expression level for different cell types are obtained by calculating the average expression after sorting the original data by markers as shown below.</h1>
    <small class="dont-index">Source: <a href="https://github.com/alexyermanos/Platypus/tree/masterR/Echidna_data.R" class="external-link"><code>R/Echidna_data.R</code></a></small>
    <div class="hidden name"><code>mus_b_trans.Rd</code></div>
    </div>

    <div class="ref-description">
    <p>mus_b_trans
A data frame contains mouse B cell average gene expression for multiple cell types, with the rows representing the gene names, column names representing the cell type names.
The original single cell sequencing data is retrieved from 10xgenomics and combined with experimental data
The expression level for different cell types are obtained by calculating the average expression after sorting the original data by markers as shown below.</p>
    </div>

    <div id="ref-usage">
    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="st">"mus_b_trans"</span><span class="op">)</span></span></code></pre></div>
    </div>

    <div id="format">
    <h2>Format</h2>
    <p>A data frame with 26538 rows and 4 variables, with the rows representing the gene names, column names representing the cell type names.</p><dl><dt>NaiveBcell</dt>
<dd><p>Cd19+;Cd27-;Cd38-</p></dd>

<dt>GerminalcenterBcell</dt>
<dd><p>Fas+;Cd19+</p></dd>

<dt>Plasmacell</dt>
<dd><p>Sdc1+</p></dd>

<dt>MemoryBcell</dt>
<dd><p>Cd38+;Fas-</p></dd>


</dl></div>
    <div id="source">
    <h2>Source</h2>
    <p>https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_c57bl6_pbmc_5gex; https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_balbc_pbmc_5gex</p>
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