HMMER3/f [3.1b1 | May 2013]
NAME  Integrase_Zn
ACC   PF02022.15
DESC  Integrase Zinc binding domain
LENG  38
ALPH  amino
RF    no
MM    no
CONS  yes
CS    no
MAP   yes
DATE  Tue Jan 27 23:47:38 2015
NSEQ  23
EFFN  6.207642
CKSUM 4019475335
GA    21.40 21.40;
TC    21.40 21.40;
NC    21.30 21.30;
BM    hmmbuild HMM.ann SEED.ann
SM    hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
STATS LOCAL MSV       -7.9834  0.71956
STATS LOCAL VITERBI   -7.8378  0.71956
STATS LOCAL FORWARD   -4.2197  0.71956
HMM          A        C        D        E        F        G        H        I        K        L        M        N        P        Q        R        S        T        V        W        Y   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.20109  2.80057  3.49512  2.89808  3.42001  3.57842  2.56402  2.94524  2.70511  2.64465  4.35137  3.04305  3.71206  2.65255  2.90113  2.68572  2.78595  2.91431  5.25541  4.18527
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.06057  5.53473  2.90359  0.61958  0.77255  0.00000        *
      1   0.27792  5.19355  5.43680  5.34473  5.94264  3.99657  6.04057  5.38815  5.31679  5.11150  5.87845  4.83751  2.85276  5.44937  5.37670  3.49753  2.68458  4.54604  7.29384  6.24859      1 A - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.05847  5.48037  2.94457  0.61958  0.77255  0.71264  0.67403
      2   2.88000  5.70655  3.53904  2.95517  5.08415  4.00695  4.13421  4.53848  1.32868  3.99581  4.75493  3.47972  4.39082  1.78694  1.99422  2.69725  2.58926  4.11816  6.09715  4.74130      2 k - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00654  5.42844  6.15079  0.61958  0.77255  0.29982  1.35074
      3   2.70992  5.64573  2.15315  1.70466  4.99137  3.03934  4.09386  4.47783  2.62057  2.61076  4.68628  2.40165  4.30023  2.53247  2.96994  2.67744  2.79979  4.03668  6.07802  4.66660      3 e - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
      4   2.80269  4.83304  4.22630  2.10078  2.33251  4.21451  4.47801  3.31091  3.60119  1.64936  3.93987  4.01884  4.59245  3.88259  3.91157  1.60610  3.43220  3.09907  5.40632  3.11082      4 s - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
      5   5.99085  7.07973  6.01204  6.02831  5.79551  5.66228  0.03799  7.03059  6.00130  6.19263  7.47661  6.32583  6.30578  6.47559  6.03960  6.15649  6.39926  6.70215  7.02813  5.75894      5 H - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
      6   2.07823  3.78867  2.76678  2.06877  4.98907  2.64068  4.09311  4.47524  2.35473  3.25849  4.68431  2.84957  4.29956  2.40371  2.82767  2.29822  2.75845  4.03451  6.07624  4.66511      6 e - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
      7   2.62006  5.07485  3.79687  3.23471  2.48857  4.07352  3.40746  2.79110  1.93653  1.60393  4.16686  2.72096  4.45793  2.91961  3.62255  2.79125  3.39562  3.36774  5.62884  4.35736      7 l - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
      8   3.48354  4.89740  5.05952  4.49658  1.85657  4.57717  1.81132  3.35218  4.34445  2.17365  4.01867  4.57357  4.93623  3.33224  4.45313  3.87871  1.87254  3.16711  3.21912  2.17772      8 h - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
      9   5.99085  7.07973  6.01204  6.02831  5.79551  5.66228  0.03799  7.03059  6.00130  6.19263  7.47661  6.32583  6.30578  6.47559  6.03960  6.15649  6.39926  6.70215  7.02813  5.75894      9 H - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     10   3.21437  2.26354  4.73213  4.14402  3.78581  4.32538  4.63972  2.54979  4.01545  2.56383  3.79664  4.33040  4.69654  1.66765  4.17983  2.49644  2.58372  1.69037  5.29980  4.10984     10 q - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     11   3.31925  5.34482  4.11228  3.74579  5.21925  2.28585  4.93452  3.09797  3.83923  4.28334  5.09676  0.63075  4.70091  4.13959  4.24663  2.71709  2.84047  4.16894  6.51973  5.24488     11 N - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     12   1.34708  4.99807  3.90120  3.33764  4.15681  4.10635  4.35069  2.89003  3.30577  3.22206  4.09940  3.78234  2.65342  2.43406  3.69718  2.15341  2.78945  2.85964  3.50888  4.31444     12 a - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     13   2.22737  5.63051  3.39183  2.49653  4.96956  3.91223  2.41581  4.45042  1.93297  3.14337  4.67295  3.38228  3.01989  2.81422  1.96511  3.10174  2.75608  4.01796  6.06630  3.33024     13 k - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     14   0.91906  5.37317  4.11650  2.81751  5.38783  1.67544  4.93863  4.84610  3.81759  4.44410  5.22528  4.08129  4.68385  4.11759  4.24282  2.59637  2.09197  4.29476  6.63714  5.34691     14 a - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     15   5.12182  6.19756  7.11071  6.52345  4.00207  6.69994  6.86771  2.69747  6.42855  0.23147  2.77826  6.91647  6.36057  5.96971  6.21257  6.20392  5.28335  3.68194  6.44180  5.64890     15 L - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     16   2.46952  5.56261  3.43306  2.87544  4.87339  3.93250  4.12104  3.44766  2.14060  3.85207  4.61351  3.41582  4.32467  2.28687  1.59215  2.30642  2.42809  3.04375  6.01583  4.63013     16 r - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     17   3.13923  5.57847  3.41734  2.86060  3.05111  3.92387  3.19670  4.36161  1.90865  2.33640  4.62677  2.55633  4.31641  2.24460  2.45122  2.11548  3.37014  3.95414  6.02741  3.58404     17 k - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.17122  5.53473  1.87457  0.61958  0.77255  0.48576  0.95510
     18   2.31860  5.55658  2.21250  2.47564  4.90131  3.82070  4.00777  4.38687  1.71151  3.86159  3.33280  3.28833  4.21427  2.04947  2.73114  2.65576  2.83821  3.94705  5.98934  4.57883     18 k - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00694  5.37044  6.09279  0.61958  0.77255  0.25169  1.50278
     19   4.54421  3.02355  5.78085  5.40931  0.53180  5.40405  2.50149  4.35367  5.21695  3.83346  4.96144  5.15647  5.71835  2.96812  5.22927  4.74688  4.76307  4.20771  4.76271  2.24611     19 F - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     20   2.76840  3.79104  2.96171  2.82636  4.98794  2.06019  2.64664  4.47364  1.98527  3.94824  4.68392  2.17573  4.30049  2.81992  2.82026  2.19828  3.36446  4.03364  6.07592  4.66524     20 k - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     21   2.00332  5.15249  5.87506  5.30384  3.20102  5.18964  5.59690  0.88529  5.14020  1.54082  3.98448  5.35402  5.46498  5.24453  5.16573  4.53834  4.09923  2.38079  5.96405  4.82638     21 i - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     22   3.33010  5.26183  5.22044  5.05846  5.96176  4.04330  5.92311  5.45361  5.08728  5.12941  5.88517  4.77865  1.80488  5.27065  5.24779  1.32470  0.81319  4.60809  7.28691  6.19699     22 t - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     23   2.66177  4.96155  3.98741  3.41784  4.10857  4.14273  4.38169  3.47376  2.93133  2.16741  3.02515  3.84341  2.69614  3.68081  1.32345  3.38269  2.74431  3.24112  3.03006  4.29089     23 r - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     24   2.70976  5.63661  3.38493  1.67330  4.97875  3.13351  4.09534  4.46249  1.80270  3.12825  4.67810  3.37678  4.30152  2.37610  2.75175  2.40901  2.75566  3.16676  6.07098  4.66203     24 e - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     25   2.41480  5.77483  2.78401  1.60405  5.10128  3.98401  4.23491  4.57910  3.01254  4.07426  4.83209  3.45465  4.41949  1.26677  3.51461  3.24513  3.52631  2.43766  6.22074  4.80558     25 q - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     26   0.19880  5.29834  5.70984  5.65465  5.76417  4.16458  6.21918  4.61339  5.54865  4.71804  5.71894  5.04279  5.02355  5.68512  5.54885  3.67586  4.00921  2.89613  7.27563  6.18881     26 A - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     27   3.54207  5.94471  3.85386  2.63371  5.37322  4.25458  3.08211  4.79215  1.62070  4.21028  4.99201  3.72489  4.62398  2.26577  1.09503  2.72130  3.74008  4.38574  6.26719  4.97251     27 r - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     28   1.97198  5.69602  2.04629  1.89031  5.04007  3.92680  4.13124  4.52866  2.87610  4.00088  4.73859  2.27057  4.33241  1.98717  2.91723  2.62791  3.41050  4.08643  6.12775  4.71185     28 e - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     29   4.37926  5.52653  6.55347  6.12341  4.73307  6.14403  7.02606  0.34671  6.11539  2.40760  4.41633  6.32651  6.25647  6.30963  6.27458  5.63686  4.63739  2.02105  7.07490  5.91795     29 I - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     30   4.33429  5.48681  6.51053  6.08043  4.79026  6.09259  6.98474  2.11966  6.07202  2.18733  4.47479  6.27142  6.22966  6.30258  6.24559  5.57766  4.59427  0.36179  7.09824  5.90864     30 V - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.03936  5.53473  3.36265  0.61958  0.77255  0.48576  0.95510
     31   2.46206  5.65522  3.44683  2.88130  5.00384  3.94914  4.11543  4.47451  1.96446  3.13056  4.69935  2.83661  4.33884  1.64792  1.81647  3.14655  2.55178  4.04874  6.07630  4.68848     31 q - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00608  5.50146  6.22380  0.61958  0.77255  0.63205  0.75822
     32   2.40232  5.61077  2.84876  2.81796  4.94797  3.89417  2.99373  4.42832  2.82301  3.39291  4.65441  2.56356  4.28880  2.25182  3.31464  1.49873  2.20669  3.99737  6.04895  4.64271     32 s - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00608  5.50146  6.22380  0.61958  0.77255  0.40408  1.10138
     33   5.43558  0.03275  6.64359  6.70795  6.87753  5.48528  7.17118  6.76889  6.74973  6.28725  7.49168  6.63522  6.20691  7.02300  6.57026  5.70624  5.97754  6.29319  7.59952  7.10305     33 C - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     34   2.39789  5.63886  2.84333  2.46096  4.98175  3.34383  2.30609  4.46622  2.56589  3.94321  3.41845  3.37578  1.89112  2.73788  3.32315  2.18987  2.95024  4.02833  6.07283  4.66313     34 p - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     35   2.34266  5.62791  2.86864  2.83311  4.96594  3.91002  3.09125  2.72898  2.21417  3.93018  4.67049  2.11387  4.30354  2.48836  3.32714  2.67775  1.85196  4.01478  6.06481  4.65813     35 t - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00588  5.53473  6.25708  0.61958  0.77255  0.48576  0.95510
     36   5.43558  0.03275  6.64359  6.70795  6.87753  5.48528  7.17118  6.76889  6.74973  6.28725  7.49168  6.63522  6.20691  7.02300  6.57026  5.70624  5.97754  6.29319  7.59952  7.10305     36 C - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.16307  5.53473  1.92059  0.61958  0.77255  0.48576  0.95510
     37   2.62673  3.50400  3.34266  2.78619  4.77807  3.84342  4.03451  4.23823  2.40245  3.21999  4.52106  2.69655  2.52805  1.58185  2.66258  2.60706  3.28554  2.99209  5.92582  4.53908     37 q - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.04864  5.37854  3.14979  0.61958  0.77255  1.01405  0.45059
     38   3.03459  5.44174  2.97716  2.41709  4.74606  3.82434  4.01667  4.20409  2.35208  2.63238  4.49351  3.30963  4.21718  1.92215  3.25397  2.30305  2.41517  2.06708  5.89955  4.51473     38 q - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00483  5.33473        *  0.61958  0.77255  0.00000        *
//
