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<title>Graphical diagnostics for class 'intra.physig' — sensi_plot.intra.physig • sensiPhy</title>


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    <h1>Graphical diagnostics for class 'intra.physig'</h1>
    <small class="dont-index">Source: <a href='https://github.com/paternogbc/sensiPhy/blob/master/R/sensi_plot.tree.physig.R'><code>R/sensi_plot.tree.physig.R</code></a></small>
    <div class="hidden name"><code>sensi_plot.intra.physig.Rd</code></div>
    </div>

    <div class="ref-description">
    <p><code>sensi_plot_intra.physig</code> Plot results from <code>intra_physig</code>.</p>
    </div>

    <pre class="usage"><span class='co'># S3 method for intra.physig</span>
<span class='fu'><a href='sensi_plot.html'>sensi_plot</a></span>(<span class='no'>x</span>, <span class='kw'>graphs</span> <span class='kw'>=</span> <span class='st'>"all"</span>, <span class='no'>...</span>)</pre>

    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
    <tr>
      <th>x</th>
      <td><p>output from <code>intra_physig</code></p></td>
    </tr>
    <tr>
      <th>graphs</th>
      <td><p>choose which graph should be printed in the output ("all", 1 or 2)</p></td>
    </tr>
    <tr>
      <th>...</th>
      <td><p>further arguments to methods</p></td>
    </tr>
    </table>

    <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>

    <p>For 'x' from <code>intra_physig</code></p>
<p>Graphs 1: Distribution of estimated phylogenetic signal (lambda or K) for each simulation
Red vertical line represents the average signal among all estimates.</p>
<p>Graph 2: Distribution of p-values for the phylogenetic signal (K or lambda) 
for each simulation. Red vertical line represents the alpha significance level = 0.05.</p>
    <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>

    <div class='dont-index'><p><code><a href='https://ggplot2.tidyverse.org/reference/ggplot.html'>ggplot</a></code>, <code><a href='intra_phylm.html'>intra_phylm</a></code>
<code><a href='intra_phylm.html'>intra_phylm</a></code></p></div>

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  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
    <h2>Contents</h2>
    <ul class="nav nav-pills nav-stacked">
      <li><a href="#arguments">Arguments</a></li>
      <li><a href="#details">Details</a></li>
      <li><a href="#see-also">See also</a></li>
    </ul>

    <h2>Author</h2>
    <p>Caterina Penone and Gustavo Paterno</p>
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