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This function is deprecated because the new version of specr uses a new analytic framework.
In this framework, you can plot a similar figure simply by using the generic plot() function and adding the argument type = "boxplot".
This function provides a convenient way to visually investigate the effect of individual choices on the estimate of interest. It produces box-and-whisker plot(s) for each provided analytical choice.'><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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    <h1>Create box plots for given analytical choices</h1>
    <small class="dont-index">Source: <a href="https://github.com/masurp/specr/blob/HEAD/R/plot_summary.r" class="external-link"><code>R/plot_summary.r</code></a></small>
    <div class="hidden name"><code>plot_summary.Rd</code></div>
    </div>

    <div class="ref-description">
    <p><a href="https://lifecycle.r-lib.org/articles/stages.html#deprecated" class="external-link"><img src="figures/lifecycle-deprecated.svg" alt="[Deprecated]"></a>
This function is deprecated because the new version of specr uses a new analytic framework.
In this framework, you can plot a similar figure simply by using the generic <code><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot()</a></code> function and adding the argument <code>type = "boxplot"</code>.
This function provides a convenient way to visually investigate the effect of individual choices on the estimate of interest. It produces box-and-whisker plot(s) for each provided analytical choice.</p>
    </div>

    <div id="ref-usage">
    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">plot_summary</span><span class="op">(</span><span class="va">df</span>, choices <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"x"</span>, <span class="st">"y"</span>, <span class="st">"model"</span>, <span class="st">"controls"</span>, <span class="st">"subsets"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
    </div>

    <div id="arguments">
    <h2>Arguments</h2>
    <dl><dt>df</dt>
<dd><p>a data frame resulting from <code><a href="run_specs.html">run_specs()</a></code>.</p></dd>


<dt>choices</dt>
<dd><p>a vector specifying which analytical choices should be plotted. By default, all choices are plotted.</p></dd>

</dl></div>
    <div id="value">
    <h2>Value</h2>
    

<p>a <a href="https://ggplot2.tidyverse.org/reference/ggplot.html" class="external-link">ggplot</a> object.</p>
    </div>
    <div id="see-also">
    <h2>See also</h2>
    <div class="dont-index"><p><code><a href="summarise_specs.html">summarise_specs()</a></code> to investigate the affect of analytical choices in more detail.</p></div>
    </div>

    <div id="ref-examples">
    <h2>Examples</h2>
    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># run spec analysis</span></span></span>
<span class="r-in"><span><span class="va">results</span> <span class="op">&lt;-</span> <span class="fu"><a href="run_specs.html">run_specs</a></span><span class="op">(</span><span class="va">example_data</span>,</span></span>
<span class="r-in"><span>                     y <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"y1"</span>, <span class="st">"y2"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>                     x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"x1"</span>, <span class="st">"x2"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>                     model <span class="op">=</span> <span class="st">"lm"</span>,</span></span>
<span class="r-in"><span>                     controls <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"c1"</span>, <span class="st">"c2"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>                     subset <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>group1 <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/unique.html" class="external-link">unique</a></span><span class="op">(</span><span class="va">example_data</span><span class="op">$</span><span class="va">group1</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># plot boxplot comparing specific choices</span></span></span>
<span class="r-in"><span><span class="fu">plot_summary</span><span class="op">(</span><span class="va">results</span>, choices <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"subsets"</span>, <span class="st">"controls"</span>, <span class="st">"y"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>`plot_summary()` was deprecated in specr 1.0.0.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> Please use `plot.specr.object()` instead.</span>
<span class="r-plt img"><img src="plot_summary-1.png" alt="" width="700" height="433"></span>
</code></pre></div>
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