
# This file is automatically generated, you probably don't want to edit this

pairchi2Options <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
    "pairchi2Options",
    inherit = jmvcore::Options,
    public = list(
        initialize = function(
            row = NULL,
            col = NULL, ...) {

            super$initialize(
                package="ClinicoPath",
                name="pairchi2",
                requiresData=TRUE,
                ...)

            private$..row <- jmvcore::OptionVariable$new(
                "row",
                row)
            private$..col <- jmvcore::OptionVariable$new(
                "col",
                col)

            self$.addOption(private$..row)
            self$.addOption(private$..col)
        }),
    active = list(
        row = function() private$..row$value,
        col = function() private$..col$value),
    private = list(
        ..row = NA,
        ..col = NA)
)

pairchi2Results <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
    "pairchi2Results",
    inherit = jmvcore::Group,
    active = list(
        conftable = function() private$.items[["conftable"]],
        chi2test = function() private$.items[["chi2test"]],
        pairwise1 = function() private$.items[["pairwise1"]],
        pairwise2 = function() private$.items[["pairwise2"]],
        pairwise3 = function() private$.items[["pairwise3"]]),
    private = list(),
    public=list(
        initialize=function(options) {
            super$initialize(
                options=options,
                name="",
                title="Pairwise Chi-Square Test",
                refs=list(
                    "rmngb",
                    "RVAideMemoire",
                    "chisq.posthoc.test",
                    "ClinicoPathJamoviModule"))
            self$add(jmvcore::Preformatted$new(
                options=options,
                name="conftable",
                title="Confusion Table"))
            self$add(jmvcore::Preformatted$new(
                options=options,
                name="chi2test",
                title="Chi-Square Test"))
            self$add(jmvcore::Preformatted$new(
                options=options,
                name="pairwise1",
                title="Pairwise Chi-Square Test 1"))
            self$add(jmvcore::Preformatted$new(
                options=options,
                name="pairwise2",
                title="Pairwise Chi-Square Test 2"))
            self$add(jmvcore::Preformatted$new(
                options=options,
                name="pairwise3",
                title="Pairwise Chi-Square Test 3"))}))

pairchi2Base <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
    "pairchi2Base",
    inherit = jmvcore::Analysis,
    public = list(
        initialize = function(options, data=NULL, datasetId="", analysisId="", revision=0) {
            super$initialize(
                package = "ClinicoPath",
                name = "pairchi2",
                version = c(1,0,0),
                options = options,
                results = pairchi2Results$new(options=options),
                data = data,
                datasetId = datasetId,
                analysisId = analysisId,
                revision = revision,
                pause = NULL,
                completeWhenFilled = FALSE,
                requiresMissings = FALSE,
                weightsSupport = 'auto')
        }))

#' Pairwise Chi-Square Test
#'
#' 
#' @param data .
#' @param row .
#' @param col .
#' @return A results object containing:
#' \tabular{llllll}{
#'   \code{results$conftable} \tab \tab \tab \tab \tab a preformatted \cr
#'   \code{results$chi2test} \tab \tab \tab \tab \tab a preformatted \cr
#'   \code{results$pairwise1} \tab \tab \tab \tab \tab a preformatted \cr
#'   \code{results$pairwise2} \tab \tab \tab \tab \tab a preformatted \cr
#'   \code{results$pairwise3} \tab \tab \tab \tab \tab a preformatted \cr
#' }
#'
#' @export
pairchi2 <- function(
    data,
    row,
    col) {

    if ( ! requireNamespace("jmvcore", quietly=TRUE))
        stop("pairchi2 requires jmvcore to be installed (restart may be required)")

    if ( ! missing(row)) row <- jmvcore::resolveQuo(jmvcore::enquo(row))
    if ( ! missing(col)) col <- jmvcore::resolveQuo(jmvcore::enquo(col))
    if (missing(data))
        data <- jmvcore::marshalData(
            parent.frame(),
            `if`( ! missing(row), row, NULL),
            `if`( ! missing(col), col, NULL))


    options <- pairchi2Options$new(
        row = row,
        col = col)

    analysis <- pairchi2Class$new(
        options = options,
        data = data)

    analysis$run()

    analysis$results
}

