---
pipeline:
  name: par_threshold_select_group
transform:
  image_pull_secrets:
  - battelleecology-quay-read-all-pull-secret
  image: quay.io/battelleecology/joiner:c0ce8112
  cmd:
  - "/bin/bash"
  stdin:
  - "#!/bin/bash"
  - python3 -m joiner.app
  env:
    RELATED_PATHS: PAR_INCOMING_PATH,PAR_OUTGOING_PATH
    LOG_LEVEL: INFO
    OUT_PATH: "/pfs/out"
    RELATIVE_PATH_INDEX: '3'
input:
  join:
  - pfs:
      name: PAR_INCOMING_PATH
      repo: par_threshold_select_upward_facing
      glob: "/(*)/(*)/(*)/"
      joinOn: "$1/$2/$3"
      empty_files: true
  - pfs:
      name: PAR_OUTGOING_PATH
      repo: par_threshold_select_downward_facing
      glob: "/(*)/(*)/(*)/"
      joinOn: "$1/$2/$3"
      empty_files: true
enable_stats: false
standby: true
