/*************************************************************************
 * tranSMART - translational medicine data mart
 *
 * Copyright 2008-2012 Janssen Research & Development, LLC.
 *
 * This product includes software developed at Janssen Research & Development, LLC.
 *
 * This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License 
 * as published by the Free Software  * Foundation, either version 3 of the License, or (at your option) any later version, along with the following terms:
 * 1.	You may convey a work based on this program in accordance with section 5, provided that you retain the above notices.
 * 2.	You may convey verbatim copies of this program code as you receive it, in any medium, provided that you retain the above notices.
 *
 * This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS    * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License along with this program.  If not, see <http://www.gnu.org/licenses/>.
 *
 *
 ******************************************************************/

/**
 * $Id
 * @author $Author
 * @version $Revision
 *
 */

package i2b2

class SubjectSnpDataset {

    public static String SAMPLE_TYPE_NORMAL = "NORMAL";
    public static String SAMPLE_TYPE_DISEASE = "DISEASE";

    Long id;
    String datasetName;

    String conceptCd;

    String platformName;
    String trialName;
    Long patientNum;
    String patientGender;
    String timePoint;
    String subjectId;

    /* This is used to organized paired datasets in GenePattern sample info text file
     The value is stored in database table "de_subject_snp_dataset", column "sample_type" */
    String sampleType;

    Long pairedDatasetId;


    static mapping = {
        table 'DE_SUBJECT_SNP_DATASET'
        version false
        columns {
            id column: 'SUBJECT_SNP_DATASET_ID'
            datasetName column: 'DATASET_NAME'
            conceptCd column: 'CONCEPT_CD'
            platformName column: 'PLATFORM_NAME'
            trialName column: 'TRIAL_NAME'
            patientNum column: 'PATIENT_NUM'
            patientGender column: 'PATIENT_GENDER'
            timePoint column: 'TIMEPOINT'
            subjectId column: 'SUBJECT_ID'
            sampleType column: 'SAMPLE_TYPE'
            pairedDatasetId column: 'PAIRED_DATASET_ID'
        }
    }
}

