/*
 * Copyright Â© 2013-2014 The Hyve B.V.
 *
 * This file is part of transmart-core-db.
 *
 * Transmart-core-db is free software: you can redistribute it and/or modify it
 * under the terms of the GNU General Public License as published by the Free
 * Software Foundation, either version 3 of the License, or (at your option) any
 * later version.
 *
 * This program is distributed in the hope that it will be useful, but WITHOUT
 * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
 * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
 * details.
 *
 * You should have received a copy of the GNU General Public License along with
 * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
 */

package org.transmartproject.db.dataquery.highdim

import org.junit.Before
import org.junit.Test
import org.transmartproject.core.dataquery.Patient
import org.transmartproject.core.dataquery.assay.SampleType
import org.transmartproject.core.dataquery.assay.Timepoint
import org.transmartproject.core.dataquery.assay.TissueType
import org.transmartproject.core.dataquery.highdim.Platform

import static org.hamcrest.MatcherAssert.assertThat
import static org.hamcrest.Matchers.*

class DeSubjectSampleMappingTests {

    def sessionFactory

    SampleHighDimTestData testData = new SampleHighDimTestData()

    @Before
    void setUp() {
        testData.saveAll()
        sessionFactory.currentSession.flush()
    }

    Object getProperty(String name) {
        testData."$name"
    }

    @Test
    void testSimpleFetchScalarProperties() {
        def assay = DeSubjectSampleMapping.get(assays[0].id)

        assertThat assay, allOf(
                is(notNullValue()),
                hasProperty('siteId', equalTo('site id #1')),
                hasProperty('conceptCode', equalTo('concept code #1')),
                hasProperty('trialName', equalTo(TRIAL_NAME)),
                hasProperty('patientInTrialId', equalTo('SUBJ_ID_1'))
        )
    }

    @Test
    void testOnDemandProperties() {
        // test the timepoint, sample and tissue properties
        def assay = DeSubjectSampleMapping.get(assays[0].id)

        assertThat assay, allOf(
                is(notNullValue()),
                hasProperty('timepoint', equalTo(new Timepoint('timepoint ' +
                        'code', 'timepoint name #1'))),
                hasProperty('sampleType', equalTo(new SampleType('sample code',
                        'sample name #1'))),
                hasProperty('tissueType', equalTo(new TissueType('tissue code',
                        'tissue name #1'))),
        )

    }

    @Test
    void testReferences() {
        def assay = DeSubjectSampleMapping.get(assays[0].id)

        assertThat assay, allOf(
                is(notNullValue()),
                hasProperty('patient', notNullValue(Patient)),
                hasProperty('platform', notNullValue(Platform)))

    }
}
